ID AY494081; SV 1; linear; genomic RNA; STD; VRL; 7089 BP. XX AC AY494081; XX DT 28-APR-2004 (Rel. 79, Created) DT 28-APR-2004 (Rel. 79, Last updated, Version 1) XX DE Pirital virus segment L, complete sequence. XX KW . XX OS Mammarenavirus piritalense OC Viruses; Riboviria; Orthornavirae; Negarnaviricota; Polyploviricotina; OC Ellioviricetes; Bunyavirales; Arenaviridae; Mammarenavirus. XX RN [1] RP 1-7089 RX DOI; 10.1016/j.virusres.2004.01.032. RX PUBMED; 15084402. RA Cajimat M.N.B., Fulhorst C.F.; RT "Phylogeny of the Venezuelan arenaviruses"; RL Virus Res. 102(2):199-206(2004). XX RN [2] RP 1-7089 RA Cajimat M.N.B., Fulhorst C.F.; RT ; RL Submitted (02-DEC-2003) to the INSDC. RL Pathology, University of Texas Medical Branch, 301 University Blvd., RL Galveston, TX 77555-0609, USA XX DR MD5; 40a74ec050bf258529aaaffb4d82653d. DR EuropePMC; PMC3210867; 21982818. XX FH Key Location/Qualifiers FH FT source 1..7089 FT /organism="Mammarenavirus piritalense" FT /segment="L" FT /host="Sigmodon alstoni" FT /strain="VAV-488" FT /mol_type="genomic RNA" FT /country="Venezuela" FT /db_xref="taxon:3052324" FT primer_bind 1..19 FT CDS 64..351 FT /codon_start=1 FT /product="Z protein" FT /note="zinc-binding; contains RING-finger motif" FT /db_xref="GOA:Q6RSS3" FT /db_xref="InterPro:IPR003224" FT /db_xref="InterPro:IPR024183" FT /db_xref="InterPro:IPR038485" FT /db_xref="UniProtKB/Swiss-Prot:Q6RSS3" FT /func_characterised="identical sequence" FT /protein_id="AAS72553.1" FT /translation="MGLRYSKEVRERHGDKDLEGRVPMTLNLPQGLYGRFNCKSCWFAN FT RGLIACSDHYLCLNCLTRLRSQSQFCGICGKPLPTKIRFEESPSAPPYEP" FT CDS complement(427..7059) FT /codon_start=1 FT /product="L protein" FT /note="RNA-dependent RNA polymerase" FT /db_xref="GOA:Q6RSS2" FT /db_xref="InterPro:IPR007099" FT /db_xref="InterPro:IPR010453" FT /db_xref="InterPro:IPR026382" FT /db_xref="UniProtKB/Swiss-Prot:Q6RSS2" FT /func_characterised="identical sequence" FT /protein_id="AAS72554.1" FT /translation="MEEHVNELHDLVRKWVSDDENFAEQKAIFLSQTKLRAITIEGLKL FT LSTIVEVDSCQKNSCIHNREKTLNSILRDNKIVCPTLPEIVPDGYRLIGDVLILLEVFV FT RSNQESFEKKYEQDYTKLMQVKKDLQSHGITLVPMIDGRSSYYVEFMPDWVVEKIRWHL FT IKLMDLLKEDGESVEELEYERLVSSLSALENQSLGLESLLSIKERGIEYIDRLTKIMYG FT NLNNNMSVDECKGEILRIYQNFRQLFDQGQFKPKYRKTDREFILKTLREHGLIKCAIMS FT EEDSCKNCMIHMFKVLTIIKQSFVSNKNIESSFILKEYNQLLSVCNKVKSLKVLNTRRG FT TLMVLDLIMLNKLLSLIKIYGIKAALTILRMQCIPAVNDRLLSIDFLISIYERKMIKSP FT KWLEKVHGKLKRVVQDCMFKALEDYLVEIDFDTWFSIKDELLMTQQFKPSICYRSSKGC FT VCNAETLKNLSMMTEEDFLSYLKILSSLSLSLVNSMKTSSAPKSKINQANDFYGIVHCE FT EVYFQGFGDNNACTLLYQKTGEKSRCYSVAFSDNEQQIDYGSKISFYADPKRFFLPIMS FT QDVLNRMCNEMLSWLDFLSDDNIKVVADLLRKLILCVLCTPSKRVQVYLQGFRYLIMAY FT VNEIHCNDLFAKLEVDALTASERQVMIWMDDLTRIVLEMSKEADMAKSFKFILNLSYLC FT HLITKETPDRLTDQIKCFEKFLEPKLKFGSLMVNPDSTPELTSEQEDQVCEGLHRLLNK FT KIFSKCENIPGVSKELVSLCSSLFNSSNLEVKPLLNHDPLTPSFTSTALDLSSNKSVVV FT PKLNEIGETLTEYDFGKIVSSVVVDLTEHFKTKGKYKLDPRDLRFRIFKKLSSLVEVNP FT TKKSNRKSESGEVVAPDESFMDELTEEQQLMLSEIEVKVSKTFEGMSKDELNRKQSKEK FT GAEAHLKRLWSKEVRDKISSETSLHEVKDFDVQLFPFDTYEELVTIVFNDKSAHDFYFL FT EKYLNPCPLDMLMKNLTLKAFNEGDFFECFKYILIASEFDNKIGRYDHKIRTRLGLKDP FT ALKIREEARISTRESNSESIAKRLDKSFFTNSSLRNLCFYSDESPTTRTGVATDVGKLK FT FGLSYKEQVGGNRELYVGDLNTKLITRLVEDYAESICSNMKYTCLNSESEFERALLDMK FT SVVRQGGFAVSMDHSKWGPHMSPAIFAQLLRCLKFRLKDGSEIDKKAVLNILYWHLHKI FT VEVPFNVVQAFMSGFVKRGLGLMDRGGATLSEEFMFGFFEKGVVPSHLSSVVDMGQGIL FT HNMSDLYGLITEQFINYVLDFCYNVSMTSYTSSDDEIMLSTSSALNHEDGSLNVDVALE FT ILEFHNFLSDKLNKFVSPKTVAGTFASEFKSRFFIWSQEVPLLTKFVAAALHNIKAKAP FT NQLAETVDTILDQCVANGVSIEIVGAISKRTNSLVCYSGHPLNPFLCLEESDVRDWVDG FT SRGYRLQRSIENIFPDDLCPNLIRDACRKVFHRIQSGKIEEEFLVASIQGSPDECLNSM FT LTIADVDEDIKKDLAGYRWLNLRAYGDLRLVLRTKLMSSTRTLQREEIPSLVRSVQSKL FT SKNFVRGAKRILTDAINKSAFQSCISSGFIGVCKSMGSKCVRDNTGGFVYIKEITKHVM FT PHTTSYCPYCKPSKNIYCEDALRSVSEYSRPIFWDYFSLVLSNACELGNWVFGAPILPK FT TVFHLDNPNHFWPIKPSSQTELEDKVGMNHVLYSIRRNYPSIFDEHISPYMSDLNMLRL FT SWVQKIKFLDLCVALDMSSECLGIISHIMRRKREELYIVKQQELSMSHTRESTNLESGL FT SLEPQEVCKNFLLQVLFDSMVNPVLLTTSQFRKYFWYGEVLQLPNDASHHLAQFTQFIL FT DCKQLNSSRAMTLDDLDVGYVTSRVKRTTTFVALSTFITSLDWENRHEYKSFQELILSS FT PCDVFKFEFSMTFSHIRSSHKFRYERCTSYILKVHVVFDKRVLNSNMLEDQSLLITPHS FT VEYFVSQSGGNHISLDGVGLLPLDPLISGKEVLNIDDVLRHEDVNFSAESPLFSKMRFD FT FKPFLKELKNKFSYKLIGPDIIMEPLVLDKGQIKEGSRIVSQLKLRLDFKAVFVALGCL FT EEESRSTFISNLFMYIGSLRGEEHRISMTESNLVQLIDNYPQVFDSMLDATNDWLNCGS FT FSLCKSKSLGCVMIADERGPFKLKGVNCRRLLPDSQAVEID" FT primer_bind complement(7071..7089) XX SQ Sequence 7089 BP; 2093 A; 1575 C; 1188 G; 2233 T; 0 other; cgcacagtgg atcctaggct tttttggatc acgcttaccc ctgttcagga taacactgaa 60 aacatgggtc tacgctacag caaagaggtg agagagagac acggagacaa agatctggaa 120 gggagagtcc ccatgacact caatctccca cagggtttat atggacgctt caactgtaag 180 tcttgctggt ttgcaaacag aggtctcata gcctgctcag atcactatct gtgcctgaat 240 tgcttgacta gactcaggtc tcagtctcaa ttctgtggaa tctgcggcaa gcctctgcca 300 acaaaaatca gatttgagga gagcccatct gctccaccat acgaacccta actgcccacc 360 gggccccggc gcacccccca aagggggtgc gcccggggcc ccccgggccc gggggcccgt 420 atgaaactag tcaatctcga cagcttggga gtccgggagc aatcttctgc agttcactcc 480 ttttagttta aaggggcccc tctcatctgc aatcatgaca caaccaagtg atttgctttt 540 gcacaatgaa aatgatccac aattcaacca gtcatttgtg gcatccaaca tcgagtcaaa 600 cacttgagga tagttgtcta ttaattgaac taggttggat tcagtcatgg atatacgatg 660 ctcttctcct ctaagtgatc ctatatacat aaacagattt gatataaatg ttgaccttga 720 ctcttcctcc agacatccca aggccacgaa aactgcttta aagtccaatc tcaatttcaa 780 ttgagaaaca attcgtgacc cttctttgat ttgaccttta tctagaacta gaggttccat 840 gatgatatct ggtccaatta atttgtaaga gaatttgttc tttaattcct tcaagaaagg 900 tttgaaatca aacctcatct tcgagaacag tggactttca gcagagaaat ttacatcttc 960 atgtctgaga acatcatcta tatttaaaac ctcttttcca ctgataagtg gatctagagg 1020 taagagaccc acaccatcca ggctaatgtg gttgccacct gattgtgaaa caaagtattc 1080 aacagagtgt ggtgtaatca gaagtgactg gtcctcaagc atatttgagt tcagtactcg 1140 tttatcgaac actacatgta ccttgagaat gtaactagtg cacctctcat atctgaactt 1200 gtgactggat ctaatatgac taaaagtcat gctgaactca aacttaaaaa catcgcatgg 1260 tgacgataga attagctctt ggaatgattt atactcatgc ctgttttccc aatctaatga 1320 tgtgatgaaa gtagacaatg cgacaaaagt agttgtcctc ttaactctac tggtcacgta 1380 acctacatcc aagtcatcta atgtcatagc cctgcttgaa ttcaactgct tacagtcaag 1440 aataaattgt gtaaactgag caagatgatg agaagcatca ttcgggagct gtaaaacttc 1500 tccataccag aagtactttc taaactgact agtggtaaga agaactggat ttaccatgga 1560 atcaaacaac acttgtaaga ggaagttctt acacacttct tgaggttcaa gacttaaacc 1620 actctctaag tttgtacttt cccttgtatg ggacatggat agctcttgct gcttgacaat 1680 ataaagctcc tctctcttcc tcctcatgat atgagatata atacccaaac attctgaaga 1740 catatctaat gccacacaca aatccaaaaa ctttatcttt tgaacccaac tcaatcttaa 1800 catgtttaaa tcagacatat aaggactgat gtgctcatca aagatactag gatagtttct 1860 tctgatcgaa tataggacat gattcattcc gactttatct tccaactctg tctgactgga 1920 gggttttatc ggccagaagt ggtttggatt gtccagatgg aagactgtct ttggtaaaat 1980 tggtgcaccg aatacccaat tccctaactc acaagcattg gacaagacta atgaaaaata 2040 atcccagaag ataggtcttg aatactctga aacacttcgc agtgcatcct cacagtaaat 2100 gttttttgag ggtttgcagt atgggcaata agaggttgtg tgcggcatta catgctttgt 2160 aatttcttta atatatacaa atcctccagt attatctctc acacactttg accccatact 2220 tttgcaaacg ccaataaacc cagacgatat gcaactttga aatgccgact tattgatggc 2280 atctgtcagt attcttttgg ctcctcttac aaagttcttt gataattttg attgaactga 2340 tctcacgagg cttggtatct cctccctttg cagggttctg gtcgatgaca tcaattttgt 2400 cctcaagacc agtctaagat caccatatgc cctgaggttg agccaccggt aaccagcaag 2460 gtctttttta atgtcctcat caacatctgc tattgttaac attgaattta aacattcatc 2520 aggggaacct tgtatggatg caacaaggaa ttcttcttca atcttcccag actgaattct 2580 atgaaacacc tttctacagg catccctaat aagattagga cacaagtcat cagggaagat 2640 attttcgatt gacctttgta atctataacc tcttgaacca tcaacccagt ctctcacatc 2700 actctcctct agacacaaga atggattcaa tgggtgccca gaataacaga ctagagaatt 2760 tgtgcgcttg gatattgcac caacaatttc tattgacacc ccattcgcca cacattgatc 2820 caaaattgta tccactgtct cagccagctg gtttggtgct ttggctttta tgttatgaag 2880 agcagcggca acaaattttg ttagtaaggg aacttcctgt gaccaaataa agaaccttga 2940 cttgaattca ctggcaaaag taccagctac tgttttagga ctgacgaatt tattcaactt 3000 atctgaaaga aaattatgga attccaagat ttccaatgcc acatcaacat tcaaagaacc 3060 atcttcatga ttcaaggctg acgaggttga taacatgatc tcatcatcac tagaggtata 3120 tgatgtcatt gagacattat agcagaaatc tagtacatag tttatgaatt gctctgtgat 3180 aagaccgtat aagtcagaca tattgtgtag tattccttgt cccatatcaa ccacagatga 3240 aaggtgtgaa ggtacaactc ccttttcaaa aaacccaaac ataaattcct ctgatagtgt 3300 tgctccacct ctatccatga gtcccaatcc tctcttaaca aatccactca taaaagcctg 3360 tacaacattg aaaggaactt ccacaatttt atgaagatgc caatataata tgtttagtac 3420 tgctttctta tctatctctg agccatcttt caatcgaaat ttcaaacacc tcaaaagttg 3480 tgcaaaaatg gcaggactca tgtgaggccc ccattttgaa tgatccatgc tcaccgcgaa 3540 tccaccctgc ctgacaacag atttcatatc aaggagcgcc ctctcaaact cagattcact 3600 attcagacat gtgtatttca tgttcgagca tattgattct gcataatcct ctactaatct 3660 ggtgatcaac ttggtgttta agtcacccac atacaactcc ctgtttcccc ccacttgctc 3720 tttataagac aacccaaatt taagttttcc aacatcagtt gccaccccag tcctcgttgt 3780 aggtgattca tcagagtaga agcaaagatt ccttagggat gaatttgtaa agaaactttt 3840 atccaacctt ttggctatgg attctgagtt actttccctt gtactaatgc gggcttcttc 3900 tctaatcttc aaagcaggat ctttgagccc taatctggtt cttattttat gatcatatct 3960 cccgattttg ttgtcaaatt cacttgcaat tagaatgtac ttaaaacatt caaaaaagtc 4020 accttcatta aaagccttaa gtgtaaggtt tttcattaac atgtctagcg gacaagggtt 4080 taagtacttc tctagaaagt agaagtcatg ggcagactta tcattgaaga caattgtaac 4140 tagttcctca taagtatcaa aagggaacaa ctgaacatca aaatccttca cctcatgaag 4200 tgaagtttct gatgaaatct tgtctctcac ttccttgctc caaagcctct tcaaatgtgc 4260 ttcagctccc ttttctttac tttgctttct attcagctca tccttggaca tcccctcaaa 4320 tgtctttgag acttttacct caatctcact caacatcaac tgctgttctt ctgtgagctc 4380 gtccataaaa gattcatcag gggccacaac ctcaccagac tcgctctttc tattgctttt 4440 ctttgttggg ttcacctcta ccagtgagct caacttctta aaaattctaa atctaaggtc 4500 tctaggatct aatttatatt ttcctttagt cttaaaatgc tctgtcaagt ccaccacaac 4560 acttgagaca attttcccaa agtcatattc agtaagggtt tcaccaatct cattcaactt 4620 tggcacaact acacttttgt tgctggacaa atctaatgca gtgctagtga aagatggggt 4680 taatggatca tggttcagta ggggcttcac ctcaagattt gaactattaa agagagagga 4740 gcacaatgat actagttctt ttgaaacacc cggtatgttc tcacattttg agaaaatctt 4800 tttattaagt agtctatgta aaccctcaca aacttggtcc tcttgctcac ttgtcaactc 4860 tggtgtagag tcagggttaa ccatcaagct gccaaattta agcttgggct ccagaaactt 4920 ctcaaaacac ttgatttggt ctgtgagcct atcaggggtt tcttttgtaa ttagatgaca 4980 taggtaagac aaattcaaaa tgaatttgaa tgactttgcc atatcagctt ccttagacat 5040 ctctaagaca atcctggtta agtcgtccat ccaaatcatc acttgcctct ctgaagccgt 5100 caatgcatcc acttccaact ttgcaaagag gtcattacaa tgaatctcat ttacataagc 5160 cattataaga tatctaaagc cttggaggta tacttggacc ctttttgatg gagtgcataa 5220 gacacacaaa atcaattttc tgaggaggtc tgcaacaacc ttgatattgt catcactcaa 5280 aaagtcaagc catgacaaca tctcattgca catcctattt agaacatctt gggacatgat 5340 tggtaaaaag aacctctttg ggtcagcata aaatgaaatc ttgctgccat aatcaatctg 5400 ttgctcattg tcagaaaatg ctacactgta acatcttgat ttttctccag ttttctgata 5460 taaaagtgtg caagcattgt tatcgccaaa tccctgaaag taaacttctt cacagtggac 5520 aattccataa aaatcattgg cttgatttat ttttgattta ggtgcacttg aggtcttcat 5580 agagttcact aatgataagc taagacttga taaaatcttc aagtatgaca agaagtcttc 5640 ttcagtcatc atgcttaagt tcttaagagt ttctgcatta cacacacaac ccttactact 5700 tctataacag atgcttggtt tgaattgctg ggtcattaaa agttcatcct ttatactaaa 5760 ccatgtgtca aaatcaatct caaccaaata atcttccaat gctttaaaca tacagtcctg 5820 aactactctc ttcagtttcc catgaacctt ttccagccat ttgggacttt taatcatttt 5880 cctctcatat atgctaatca gaaagtcaat tgacaacagt ctatcattga cagcggggat 5940 acattgcatt ctcaggatag tcagtgcagc tttgattcca taaatcttaa tcaaacttaa 6000 gagtttattt aacattatta aatctaaaac catcaaagtc ccccttcttg tgttcagtac 6060 cttcaaactc ttaaccttat tgcaaactga caacaattgg ttgtattctt ttaatatgaa 6120 gctgctttct atgttcttgt tgctcacaaa agattgcttg attattgtca aaactttgaa 6180 catgtgaatc atgcagtttt tgcaagagtc ttcttcactc atgattgcac atttgatcaa 6240 accatgttct cttaatgtct ttagtatgaa ctctctatcc gttttcctat attttggttt 6300 gaattgaccc tgatcaaaaa gttgtctaaa attctgatag atcctcaata tttccccttt 6360 gcactcatca actgacatat tattattcaa attcccatac attattttgg tgagtctgtc 6420 tatatactca attccccttt ccttaattga taatagggat tcaagtccga gactttgatt 6480 ttccaaggca gaaagactag atacaagcct ctcatattct agctcttcaa ccgattcacc 6540 atcttctttt agcaaatcca ttaattttat tagatgccat ctaatttttt ctaccaccca 6600 gtctggcatg aactcaacat aataggatga cctaccatca atcataggaa caagtgtgat 6660 gccatgtgac tgtaagtctt tctttacttg cataagtttt gtgtagtctt gttcatactt 6720 cttttcaaaa gactcctggt tagagcgcac aaacacctct agtagtataa gtacatctcc 6780 aatcaaccta taaccatctg gaacaatttc tggtaatgtc ggacaaacta ttttgttgtc 6840 tctgagtatt gagttcaatg ttttctctct attatgaatg catgagttct tttgacatga 6900 gtcaacctct acaattgtgg acaacaattt tagtccttca attgttatag ccctcaattt 6960 tgtctgggac agaaaaattg ctttctgctc cgcaaagttt tcatcatcag acacccattt 7020 cctgacaagg tcgtgcaatt cgttaacgtg ttcctccatg ttcaaggaaa gcgtaggatc 7080 cactgtgcg 7089 //