ID AY493509; SV 1; circular; genomic DNA; STD; VRL; 7263 BP. XX AC AY493509; XX DT 05-JAN-2004 (Rel. 78, Created) DT 14-MAY-2005 (Rel. 83, Last updated, Version 2) XX DE Banana streak GF virus, complete genome. XX KW . XX OS Banana streak GF virus OC Viruses; Ortervirales; Caulimoviridae; Badnavirus. XX RN [1] RP 1-7263 RA Zhang L., Lockhart B.E.L., Lheureux F., Geering A.D.W., Olszewski N.E.; RT "Cloning and sequencing of a second banana streak virus isolate which may RT also occur as a retroelement, integrated into the host genome"; RL Unpublished. XX RN [2] RP 1-7263 RA Zhang L., Lockhart B.E.L., Lheureux F., Geering A.D.W., Olszewski N.E.; RT ; RL Submitted (02-DEC-2003) to the INSDC. RL Plant Pathology, University of Minnesota, 1991 Upper Buford Circle, RL St.Paul, MN 55108, USA XX DR MD5; ecf7f2b07ae9d9093ef4fee9b9a5a0aa. DR EuropePMC; PMC2898222; 20427523. XX FH Key Location/Qualifiers FH FT source 1..7263 FT /organism="Banana streak GF virus" FT /host="plantain" FT /strain="Goldfinger" FT /mol_type="genomic DNA" FT /country="Ecuador" FT /db_xref="taxon:328670" FT gene 484..1011 FT /gene="ORFI" FT CDS 484..1011 FT /codon_start=1 FT /gene="ORFI" FT /product="ORF1" FT /db_xref="InterPro:IPR010746" FT /db_xref="UniProtKB/TrEMBL:Q6RSW9" FT /protein_id="AAR86690.1" FT /translation="MNSDLKEFENQFLSWRNSWQNWKDLDYLNLESSSRADLAHNLRIT FT AYRVDLGNKALFALSKQNCLHTLDLRTKLQEQELQLQEIGKLSKIVRQQRNDLKLLLSK FT QDHLQEEILQLRQDYLKRRPLSKEDVEELVIKISEQPKFIEKQTEALTEELAKKVDKVE FT EPIHHLRKTILG" FT gene 1008..1346 FT /gene="ORFII" FT CDS 1008..1346 FT /codon_start=1 FT /gene="ORFII" FT /product="ORFII" FT /db_xref="UniProtKB/TrEMBL:Q6RSW8" FT /protein_id="AAR86691.1" FT /translation="MNSEAYKEALRATSKGWPDNGIGFTEKESTTNLSTISRQLNTILY FT TVLQLRIEVASLQEELRKTKVEQSPDITKLTEQLDKVHLSSKGAAYKEDRGKIKVFKNP FT FDLLKEIQ" FT gene 1343..6841 FT /gene="ORFIII" FT CDS 1343..6841 FT /codon_start=1 FT /gene="ORFIII" FT /product="polyprotein III" FT /note="cleavage products predicted to include viral FT movement protein, coat protein, aspartic protease, reverse FT transcriptase and RNAse H" FT /db_xref="GOA:Q6RSW7" FT /db_xref="InterPro:IPR000477" FT /db_xref="InterPro:IPR001878" FT /db_xref="InterPro:IPR001995" FT /db_xref="InterPro:IPR002156" FT /db_xref="InterPro:IPR018061" FT /db_xref="InterPro:IPR021109" FT /db_xref="InterPro:IPR036875" FT /db_xref="InterPro:IPR041373" FT /db_xref="UniProtKB/TrEMBL:Q6RSW7" FT /protein_id="AAR86692.1" FT /translation="MTTQRAHLPSINGTEVASTSRQPGTPLVEDQIRDYRRSARARYEA FT QRMGRNLVNIGRTIIGRRPREHTLALLMDPEVELRRSMQERARTVPAEVLYMTRRDDIH FT HRVYHYRSEEGMLITGSDQQDRTFITEESYEHLAQAEIEYIHLGILQVRFQILHRRYAG FT TMALLVFRDTRWNSDDRSIIAAMEVDLSEGNQLIYIMPDMMMTIKDFYRHIQMSIQTRG FT YDSWTGAEANLLITRSITSRLSNTPNVGFAFQVNKVAEYLRSKGIKAIDAMKYSTGQFQ FT HSRWNLRPSTVVIPVLPSTLVTSTNYDGSTTLQFGDYQAASSSRPPIYNNEDDEIDEEQ FT HIVAVITIIDDQEDDYPALAAVEKQIFPENMVGEEEAIISSFLQKLELSEDEESYYGDL FT ESEPRSHYEINHLDDDYPELLNVEKILSTNESAISNYRVPQDEEMTVPGYAPAGSSRGW FT ATNIDDAMLHQRKPKRWDNSSEWFQLPSANARQGSIFVMPYDFDVKVFERWESSVLVHL FT ADKNFDTPEDKVIYIENLLGESEKKAFMTWRMKYLPEFEALKAAALGNNGTQNILNQIR FT MIFFLENPKVGTTDEQDAAYKTIKSLVCNEMTDKAVYRYMNDYFHLASKSGRMWANEEL FT STEFFTKLPRHLGDKVEKAFKERHPTNSIGVTARIAFTRNYLKDMCQEALFQSQLKKMN FT FCGNTPVHGIYGKNKEGGFRKYGVRKNTSYKGKPHKSHIRIGKQKHLNLRKKDCKCFAC FT GETGHYASECTNPKKFTHRVAILESLDLQEGLEVVSVGMDESDVSDIYSISENEDNHQI FT TEEWDVLMLQEEEIPEPSEYYIGEPGWRSQMKVSKTEFHCQHEWKFDKEDSKHCRDCKF FT EARRDNRMDCSKCQLTICALCTYHCFKILIPRKQTTPSMKHDWRELAERQSELLRKFCQ FT REKELEQEVQELRREISTLKTDLANLSVIQETPEEDEEELQRLRQENTLLELLNQKQQK FT DIEALQQQNELLLQLAKIDKKEIESLRSQHPLPVLHLDDFAVTVVQPSNNLLNIKVIVE FT IDGKQLPLNAILDTGAAICVCNGEVIPQEYRRSSLTDSLIQGVNGATRVNEILKDGKLW FT VGDQYFRIPRTYIMPTMHKGLEFIIGMNFIKAMEGGLRIEKGEVTFYKLVTTVNTSPKP FT HEVCLLDELDLELPEYYDICAAIPRQGSINEEFISPSEIDRLKRLGFIGEEPLRHWKRN FT QIKCKLEIKNPDLIIEDRPLKHVTPAMKETMTKHVQRLLDIKVIRPSTSKHRTTAIMVN FT SGTEIDPITGAEKKGKERLVFNYKRLNDNTEKDQYSLPGINTIIARISHSKIYSKFDLK FT SGFHQVAMEEESIPWTAFWAINGLYEWLVMPFGLKNAPAIFQRKMDNCFRGTEKFIAVY FT IDDILIFSDSKEAHRTHLRQFITICEENGLVLSPTKMKIGVQQVDFLGATIGDSKVRLQ FT PHIVKKVLETKEESLSETKALRRWLGILNYARAYIPDLGKILGPLYSKTSGKGERKLNH FT QDMKIIHQIKEKVKNLPELEVPPPESIILIETDGCMDGWGGICKWKLNKGEPRSAEKIC FT AYASGRFNPIKGAIDAEIQAVIYSLEKFKIYYLDKRELILRTDSKAIVRFYEKCSEHKP FT SRVRWMTLTDYISGCGVKVYFEHIDGKDNTLADELSRLVQAILINKEESPIILSLIKAT FT TEVLQKENPISRSRLALCISRALGNKYQVNFMTWEQPQLKCACGENAVLLTSHTSRNPG FT RRFYRCGTNTCHVWYWADLIEDYIAQLSNLQNLDSGQADDEGWAYQTEDLINPEDLANS FT DIDDPPEDSGLFHRHDD" XX SQ Sequence 7263 BP; 2492 A; 1520 C; 1538 G; 1713 T; 0 other; tggtatcaga gcaaggttaa gattgatggc attcatgggg taaaacccta agataggggc 60 ctgattgagt tctacgtttc tgttaaggta agatttcctt tcctgataag tcgaataatt 120 tttatgtatc tttctcaagt aatcttgaaa aactggcatg attattgaat gaaaaatgag 180 ctattaccaa aaacaaaaaa atggagttgg gaagacagag gggttgtttg cagaaggccg 240 ttctaagcca agtttgggcg tcaaaggccg tgtcagaccc ggagatcttc taatatcctc 300 ctgaggtaat aagcgcttcg tgaagtagtt caataattat gactagttat taagagagct 360 tgggtaaaag gtagcatcaa aagttagtaa gacgtaaagg aaggaaggaa aaccctcaga 420 taacgtgtct catgaaggtt acccctatcc ttctattctg aaattacttc tacctaacct 480 tgtatgaact ccgacctcaa agagtttgag aaccaattcc tttcttggag gaattcttgg 540 caaaattgga aggatctaga ttacctaaat ctagaatcct catcaagagc tgacttagct 600 cacaaccttc ggatcactgc atatcgagta gatctcggta acaaagcctt gtttgctcta 660 agcaaacaga actgtcttca tactctcgat cttagaacta aattgcagga gcaggaatta 720 cagctccagg agattggaaa actttccaaa attgttcgac aacagcgaaa cgatctgaag 780 ctgctgctct caaaacagga tcatttgcaa gaagagatcc ttcaactaag gcaggactat 840 ctcaaaagaa gacccctgtc taaggaagac gttgaagagc tggtgatcaa aatcagcgaa 900 caaccgaaat ttatagaaaa gcaaacagaa gccttaacgg aagagttagc gaagaaagtt 960 gacaaagtgg aagagccaat tcatcatcta agaaaaacaa ttcttggatg aactcagagg 1020 catacaagga agcactccga gcaacatcca aaggctggcc agacaacggt attggattca 1080 cagaaaagga gtcaaccaca aacctttcca ctatttccag gcaactcaat acaatactct 1140 atactgtact gcaattacgt atagaagttg ctagtttgca ggaagagctc aggaaaacaa 1200 aggtcgagca aagcccagac atcactaagc tcacagaaca attggacaaa gtccatttaa 1260 gctcaaaggg tgcagcttac aaagaagaca gaggaaagat taaagtcttc aagaaccctt 1320 ttgaccttct caaggagatt caatgacgac tcaaagagct catcttccat ccataaatgg 1380 aactgaggtc gccagtacct cacgacagcc tggaacccct ctggtagaag accagattcg 1440 ggactaccga cgttctgcac gtgcccgata tgaagcccag agaatgggca ggaaccttgt 1500 caacatagga cgaacaataa tcggaagaag acctagggag cataccctag ccttactcat 1560 ggaccctgag gtggagctac gaaggtccat gcaagagcga gcaagaacag tacctgctga 1620 agtcttgtat atgacacgac gagacgacat acaccacaga gtgtatcatt accgatctga 1680 ggaaggaatg ttaataacag gctcagatca gcaagaccgc accttcatca cagaagaatc 1740 atacgagcat ctggctcagg cggaaataga gtatatacat cttggtatac tccaggtacg 1800 atttcaaatt ctccatagaa gatatgcggg aactatggct ttacttgtat tcagggatac 1860 aagatggaac tccgatgaca ggagcataat agcagccatg gaggttgacc tgtctgaagg 1920 caaccaactt atatacatca tgccagacat gatgatgact atcaaagatt tctatagaca 1980 catccagatg tccatccaga caagaggata tgattcttgg acaggcgctg aagccaacct 2040 actaattaca aggagtatta cttcccggtt atccaatact cccaacgtag gattcgcctt 2100 ccaagtaaat aaagttgctg agtaccttcg ttctaaaggg atcaaggcta tagacgccat 2160 gaagtactca acaggacagt tccagcacag cagatggaac ttacgaccat ccacagtggt 2220 aattcctgta ctcccatcta ccttagtaac ttctactaac tatgatggca gtaccacact 2280 acaattcgga gactaccaag ctgcttcatc atctcgaccg ccgatctaca acaacgagga 2340 tgatgaaatt gacgaagaac aacatattgt tgccgtcatc accatcattg atgatcaaga 2400 agatgactat cctgccctag cagctgtgga aaaacaaatt tttccagaaa acatggtggg 2460 agaagaggaa gcaattattt cctcattttt acaaaaactt gaactctctg aagatgaaga 2520 gagctactac ggcgacttgg agtctgaacc aaggagtcac tacgaaatta atcatcttga 2580 tgacgactat ccagagttgc taaatgtgga aaaaatcctc tccacaaatg aatctgcaat 2640 aagcaactac cgagtacctc aagacgaaga aatgactgtc ccaggctatg cacctgctgg 2700 gagctctcgg ggttgggcta caaacattga tgatgcaatg ctacatcaaa ggaagcccaa 2760 aagatgggac aacagctcgg aatggttcca gctaccatcc gccaacgcaa gacaaggctc 2820 aatatttgtc atgccctatg attttgatgt caaagtcttc gaaagatggg aaagttcggt 2880 attagtacac cttgccgaca agaactttga tactcccgaa gacaaggtca tatacataga 2940 gaatctactc ggggaatccg agaagaaagc cttcatgacc tggcgaatga agtacttacc 3000 cgagttcgaa gccctaaaag cagcagcact tggaaataat ggtacgcaaa acattctaaa 3060 ccaaataaga atgatatttt ttcttgaaaa tcccaaagta ggaacaacag atgaacagga 3120 tgcagcctat aagaccatca agagcctagt ctgcaatgaa atgaccgaca aggcagtcta 3180 taggtatatg aatgactatt tccacctggc atctaaaagc ggaaggatgt gggcaaacga 3240 ggagttatca acagaattct tcaccaaact cccacgacat ctcggagata aagtggagaa 3300 agcgttcaaa gaaagacacc ctacaaactc aattggggta acagctcgca ttgcttttac 3360 tagaaattat ttaaaagata tgtgtcagga ggcgttattt caaagccaac tgaagaagat 3420 gaacttttgc ggcaatacac ccgtacatgg aatatatgga aaaaataaag aaggaggctt 3480 cagaaaatac ggagtaagaa agaatacatc ctacaagggt aagcctcata aatcgcatat 3540 tcgcattgga aagcagaagc acctaaacct caggaagaag gactgcaagt gcttcgcttg 3600 cggagaaaca ggccactacg catcagaatg tacaaaccct aaaaagttca cccacagggt 3660 agctattctg gagtccttag accttcaaga aggacttgaa gtggtatccg tcgggatgga 3720 tgagtcagat gtatcagaca tctactctat ctcggaaaat gaagacaacc atcaaattac 3780 tgaggaatgg gatgtcttaa tgttacagga agaagaaata ccagaaccat ctgagtatta 3840 cattggagaa cctggctgga gatctcagat gaaggtctca aaaactgaat tccactgcca 3900 gcatgagtgg aaatttgaca aagaagatag taaacactgc agagattgca agtttgaagc 3960 tcggcgagac aacagaatgg actgcagtaa gtgccaactt accatttgtg cactatgtac 4020 ttaccactgc ttcaaaatac ttattcccag gaaacagaca actcctagta tgaagcatga 4080 ctggagagaa ctagctgaac gacaaagcga actactaagg aagttctgcc aaagagaaaa 4140 ggaactagaa caagaagtac aggagctaag acgagagata agtactctga aaacagacct 4200 agctaacctc tcggtaatac aagagacacc agaagaggat gaggaagaat tacaacgctt 4260 aaggcaggaa aatactcttc ttgaattact aaaccaaaaa cagcaaaagg acatagaagc 4320 actgcaacag cagaatgagc tacttctaca acttgcaaag attgacaaga aagagattga 4380 aagcctcaga agtcaacatc ctctccctgt actacacctt gacgactttg cggtaacagt 4440 agtacagcca agcaacaacc tgctgaatat caaggtaatc gttgaaatag atggaaagca 4500 attaccctta aatgctattc ttgacacagg agcagcaatc tgtgtatgca atggagaagt 4560 aatcccacaa gaatacagaa gatcctctct tacagattcc ttgatccaag gtgtaaatgg 4620 agcaacacga gtcaacgaaa tcctgaagga cggaaaactc tgggttggtg atcagtactt 4680 taggataccc agaacttata ttatgccaac aatgcataag ggccttgaat ttatcattgg 4740 catgaatttt atcaaagcca tggaaggtgg cttacggatc gaaaagggag aagtaacttt 4800 ttataagtta gtcacgacgg tcaatacctc accaaagcca catgaggtat gcttacttga 4860 tgagttggat cttgagttac ctgaatacta tgacatatgt gcagctattc caagacaagg 4920 gagcatcaat gaggaattta tttcaccctc agaaattgac cgactcaaaa gattgggatt 4980 cataggggaa gaaccattaa ggcactggaa aaggaatcag atcaagtgca aactcgagat 5040 caagaatcct gacctgatca tagaagaccg tcccctcaaa catgttacac cagcaatgaa 5100 ggagaccatg actaaacacg tacaaaggct actggatata aaggttatca gaccatctac 5160 tagtaagcat aggactaccg ctataatggt taattctggt actgaaattg atcctattac 5220 tggtgctgaa aagaaaggca aagaacgtct tgtcttcaat tataaaaggc ttaatgacaa 5280 tactgaaaag gatcagtatt ccttacctgg gataaacaca atcatagcta gaatcagcca 5340 ttcaaaaata tattctaaat ttgacttgaa gagcggtttt catcaagtag ctatggagga 5400 ggaatctatc ccatggacgg ccttttgggc tattaacggg ttatacgaat ggctcgtaat 5460 gccgtttggt ctgaagaacg cacctgccat atttcaacga aagatggaca actgcttccg 5520 aggtacagaa aaatttatag ctgtttacat agatgatatt ctaatctttt cagatagcaa 5580 ggaagcccat cgaacccatc tcagacaatt catcaccata tgtgaagaaa atgggctggt 5640 actaagccca acgaagatga agataggagt ccaacaagtg gatttcttgg gtgcaaccat 5700 tggcgattct aaagtaaggc ttcagcctca catagtcaaa aaagtgctag aaacaaagga 5760 agaaagcctg tctgaaacga aggccttaag aagatggtta ggcatactca attatgccag 5820 agcatatatt cctgatcttg gaaaaatcct aggtccctta tactcaaaaa cctcaggaaa 5880 aggggagcga aaactcaatc accaagacat gaagataatt caccagatca aggaaaaggt 5940 aaaaaatctc cctgaattag aggttcctcc accagagtcc atcatactaa ttgaaacaga 6000 cggatgtatg gatggttggg gtggcatttg caaatggaag ttaaacaaag gggaaccccg 6060 atccgctgaa aagatctgtg cttatgcaag tggacgtttc aaccccatca aaggagctat 6120 tgacgctgaa atacaggctg ttatctacag tctagaaaaa tttaagatct actatcttga 6180 caaaagggag cttattttaa gaactgacag caaggcaatt gtcaggttct acgaaaaatg 6240 ttcagaacac aaaccctctc gtgtccgatg gatgactcta actgactaca tctcgggatg 6300 cggagtcaag gtatattttg aacacatcga tggaaaagat aatacacttg cagacgaact 6360 atcacgactt gttcaagcaa ttctcatcaa caaagaagaa tctcctataa tactatctct 6420 aatcaaagca acaacggagg tattacaaaa ggaaaatcct atttccagga gtagattagc 6480 tctatgcatt tccagagcac tgggtaacaa atatcaagtc aatttcatga cttgggaaca 6540 accccagctg aagtgtgcct gtggagaaaa tgccgtactc cttacttcac ataccagccg 6600 aaatccagga cggagattct atagatgtgg taccaacact tgtcatgtat ggtactgggc 6660 tgatctaatc gaagattata ttgcgcaact tagcaatctt cagaatcttg actcaggaca 6720 agcagatgat gaaggatggg cctatcaaac agaagatctg atcaacccag aagatctggc 6780 caactccgac atagacgacc ctccagaaga ctcaggacta ttccaccgac atgatgacta 6840 aggcggacgt ggtggaccca gcaataatta aggaatccaa ttccttactt caccaggttc 6900 attattaaag agcctttaca gctcataccc ttattaataa tgttggtgct tgtactattg 6960 tgctttgcca gcacatacta gcgtgtaaag gcatctggtt gtccccagaa ggcctaaagt 7020 tagtgcgttc caacgcacac ctatgtgtaa aggtatctgg ctgtttccag acgctacctc 7080 cctcttttct cctcccgtct atataaggag gccgaaccta agtgtttcag gcatcgaggg 7140 aaatacccat ctgcctaatc cacttccagt gttttccaaa gcagctgaag ttttcagtct 7200 gtgagtagaa agcaagatcc ttgtaagaat ttttgagaag tttatattag atttctcccc 7260 ttt 7263 //