ID AY429434; SV 1; linear; genomic RNA; STD; VRL; 3356 BP. XX AC AY429434; XX DT 15-JAN-2004 (Rel. 78, Created) DT 28-MAY-2005 (Rel. 84, Last updated, Version 2) XX DE Cucumber mosaic virus segment RNA1, complete sequence. XX KW . XX OS Cucumber mosaic virus (cucumber mosaic cucumovirus) OC Viruses; Riboviria; Bromoviridae; Cucumovirus. XX RN [1] RP 1-3356 RA Yan L., Xu Z., Goldbach R., Chen K., Prins M.; RT "Nucleotide sequence of cucumber mosaic virus (CA isolate) RNA1"; RL Unpublished. XX RN [2] RP 1-3356 RA Yan L., Xu Z., Goldbach R., Chen K., Prins M.; RT ; RL Submitted (06-OCT-2003) to the INSDC. RL Plant Science, Lab of Virology, Wageningen University, Binnenhaven 11, RL Wageningen 6709 PD, Netherlands XX DR MD5; d441528a3b7ab416988ef468c64499d0. DR RFAM; RF01084; TLS-PK3. XX FH Key Location/Qualifiers FH FT source 1..3356 FT /organism="Cucumber mosaic virus" FT /segment="RNA1" FT /host="Arachis hypogaea L." FT /lab_host="Nicotiana benthamiana" FT /isolate="Ca" FT /mol_type="genomic RNA" FT /country="China" FT /db_xref="taxon:12305" FT gene 96..3077 FT /gene="1a" FT CDS 96..3077 FT /codon_start=1 FT /gene="1a" FT /product="1a protein" FT /db_xref="GOA:Q6T7D9" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR021002" FT /db_xref="InterPro:IPR022184" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:Q6T7D9" FT /protein_id="AAR89473.1" FT /translation="MATSSFNINELVASHGDKGLLANALVDKTAHEQLEEQLQHQRRGR FT KVYIRNVLSVKDSEVIRNRYGGKYDLHLTQQEFAPHGLAGALRLCETLDCLDSFPSSGL FT RQDLVLDFGGSWVTHYLRGHNVHCCSPCLGIRDKMRHAERLMNMRKIILNDPQQFDGRQ FT PDFCTHPAADCKVQAHFAISIHGGYDMGFRGLCEAMNAHGTTILKGTMMFDGAMMFDDQ FT GVIPELNCQWRKIRSAFSEAEDVTPLSGKLNSTVFSRVRKFKTLVAFDFVNESTMSYVH FT DWENIKSFLTDQTYSYRGMTYGIERCVINAGIMTYKIIGVPGICPPELIRHCIWFPSIK FT DYVGLKIPASQDLVEWKTVRILTSTLRESEEIAMRCYNDKKAWMEQFKVILGVLSAKSS FT TIVINGMSMQSGERIDINDYHYIGFAILLHTKMKYEQLGKMYDMWNASSISKWFAALTR FT PLRVFFSSVVHALFPTLRPREEKEFLIKLSTFVTFNEECSFDGGEEWDVISSAAYVATQ FT AVTDGKVLAAQKAEKLAEKLAQPVIEVSDRPEALPPTPGDIDDVCGKEQEVLELDSLSA FT QTRSPITRMAERATAMLKSAVYEKQLHDTTGSNLKRIWNMAGGDDKRNSFEGNLKFVFD FT TYFTVDPLVNVHFSTGRGMRPIPEGTVYSVGYNDRGLGPKSDGKLYIVNGECVICNSES FT LSTVTRSLQAPTGTISQVDGVAGCGKTTAIKSIFEPSTDMIVTANKKSAQDVRMALFQS FT SDSKEACTFVRTADSVLLNECPTVSRVLVDEVVLLHFGQLCAVMSKLKAVRAICFGDSE FT QIAFSSRDASFDMRFSKIIPDESSDADTTFRSPQDVVPLVRLMATKALPKGTHSKYTKW FT VSQSKVKRSVTSRAIASVTLVDLDPSRFYITMTQADKASLISRAKEMNLPKTFWDERIK FT TVHESQGISEDHVTLVRLKSTKCDLFKKFSYCLVALTRHKVTFRYEYCGVLNGDLIAEC FT VARA" XX SQ Sequence 3356 BP; 836 A; 729 C; 821 G; 970 T; 0 other; gtttatttac aagagcgtac ggttcaatcc ctgcctcccc tgtgaaataa ccctttgaaa 60 acctctctct tctaatcttt tctctgataa ttcctatggc gacgtcctcg ttcaatatca 120 atgaattggt agcctcccac ggcgataaag gactactcgc gaacgccctc gttgataaga 180 cagctcatga gcagcttgag gagcaattac aacatcaacg tagaggccgt aaggtctaca 240 ttcggaacgt tctgagtgta aaggactccg aggtcattcg gaatcggtat ggaggaaagt 300 acgacctcca tcttacccag caggagtttg ctccccacgg cctagctggt gccctccgct 360 tgtgtgaaac tctcgattgt ctagactctt tcccttcatc aggtctgcgg caggaccttg 420 tcttagactt cggaggaagt tgggtcacac attacctccg cggacacaac gtacactgct 480 gttccccttg cttgggtatc cgcgataaaa tgcgccacgc ggaacgttta atgaacatgc 540 gcaagatcat cttgaacgat ccacaacagt tcgatggtcg gcagccggac ttctgcactc 600 atcctgctgc ggattgcaaa gtacaagccc actttgctat atccattcat ggaggttatg 660 atatgggctt cagaggatta tgtgaagcaa tgaacgctca cggaaccact attctgaagg 720 gaacgatgat gttcgatggc gctatgatgt ttgacgacca aggtgtaata cctgaactta 780 attgccagtg gagaaagatc aggagtgctt tctccgaagc tgaggacgtc acaccgttgt 840 ctggtaaact taattccaca gtattctctc gagtgcgtaa gtttaagact ttggtagctt 900 ttgactttgt taatgagtct actatgtctt atgttcatga ttgggagaat ataaaatctt 960 ttctcacaga ccagacttat tcataccggg gaatgactta cggtattgaa cgttgcgtta 1020 ttaacgccgg tattatgacg tataagatca ttggtgtacc tgggatttgc ccgcccgaac 1080 tcattcgaca ttgtatttgg ttcccctcta ttaaagacta tgttggtcta aagattcccg 1140 cgtcgcagga cttggttgag tggaaaacag tgcgtatttt gacgtcaacg ttacgtgagt 1200 ctgaagagat tgctatgagg tgttataatg ataagaaagc gtggatggaa cagttcaagg 1260 ttatcttggg tgtcttatct gcaaaatcat cgaccattgt tatcaatggt atgtccatgc 1320 aatctggcga gcgtatagac attaatgatt atcattatat tggattcgcc attcttcttc 1380 acacaaaaat gaagtatgaa caactaggga aaatgtatga tatgtggaac gcttcgagta 1440 tttcgaagtg gttcgcagcg ttgactcgtc cgctgcgtgt atttttctct agcgttgttc 1500 acgcattgtt cccgactttg agaccccgcg aggaaaaaga attcttaatt aaactctcta 1560 ccttcgtgac ttttaatgaa gagtgctcat ttgatggtgg agaggaatgg gacgtgatat 1620 catctgctgc atacgttgct acgcaggctg ttaccgatgg gaaagttttg gctgcgcaga 1680 aggccgagaa gctcgctgag aagcttgcac aacccgtgat tgaggtatcg gacagacctg 1740 aggcgttacc tccaacgcct ggtgatatag atgatgtttg tggaaaggag caagaggttt 1800 tggaacttga ctccttgtca gctcagacac gttcccccat cactaggatg gctgagcgag 1860 ctactgctat gttaaagtcc gccgtttatg aaaaacagct gcacgacacc acagggtcta 1920 atttgaaacg catttggaac atggcgggtg gggatgacaa aagaaactcc ttcgagggta 1980 atctgaagtt tgttttcgac acgtatttta ccgttgatcc cttggtgaat gttcatttct 2040 ccaccgggcg ggggatgcgt ccgatacccg agggcaccgt ttactcggtt ggttataacg 2100 accgcggttt aggtccaaag tctgatggaa agctttacat tgttaatggt gagtgtgtga 2160 tttgcaacag tgagtcttta tctactgtca ctcgctcgct tcaagctccg actggaacca 2220 ttagtcaagt cgacggggtt gctggttgcg ggaaaactac agcaataaaa tccatttttg 2280 agccgtccac tgatatgatc gttaccgcga acaaaaaatc cgctcaagat gtgcgcatgg 2340 cactgtttca atcatcagat tccaaagaag cttgcacttt cgttcgtact gccgattctg 2400 tcctacttaa tgagtgtcca actgttagta gggttttggt tgacgaggtt gtgctgcttc 2460 attttggtca gctgtgtgct gtcatgtcca aactgaaggc tgttcgagct atatgtttcg 2520 gggattcgga gcaaattgct ttttcttctc gagatgcctc gtttgatatg cgtttctcta 2580 agatcattcc tgatgaatct agtgatgctg ataccacatt ccgtagcccg caagatgttg 2640 tgccgcttgt gcgtttaatg gctacgaagg cccttccgaa agggacccat tcgaagtaca 2700 cgaaatgggt ttctcaatct aaggtgaaga gatctgttac gtctcgtgct atcgctagtg 2760 tgacattggt tgacctggat ccttccaggt tttatataac aatgacccag gctgataaag 2820 cttcactgat ttcaagggcg aaagagatga atctaccaaa gactttctgg gatgaaagga 2880 ttaaaactgt acatgagtct caaggtattt ctgaagacca tgttactttg gtaagattga 2940 agagcacaaa gtgtgacctg ttcaagaaat tttcatattg tcttgttgct ttgacaagac 3000 ataaggtcac tttccgctac gagtactgtg gtgtgctaaa cggtgattta atcgccgaat 3060 gtgttgctcg tgcttagggg tctccctcct tcgggcggga cttgagttgg cggtaatcta 3120 taaaccgtct gaagtcacta aacactttgt ggtgaacggg ttgtccatcc agcttacggc 3180 taaaatggtc agtcgtggag agatccacgc cagcagactt acaagtctct gaggtgccct 3240 tgaaaccatc tcctaggttt cttcggaagg acttcggtcc gtgtacttct agcacaagat 3300 gctagtctca gggtacgggc accccccact ttggtggggt ctcttaaagg agacca 3356 //