ID AY428769; SV 1; linear; genomic DNA; STD; VRL; 2738 BP. XX AC AY428769; XX DT 17-DEC-2003 (Rel. 78, Created) DT 17-DEC-2003 (Rel. 78, Last updated, Version 1) XX DE Tomato leaf curl New Delhi virus isolate ToLCNDV-AVT1 segment DNA A, DE complete sequence. XX KW . XX OS Tomato leaf curl New Delhi virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2738 RA Sivalingam P.N., Malathi V.G., Varma A.; RT "Nucleotide sequence of DNA A of Tomato leaf curl New Delhi virus isolate RT ToLCNDV-AVT1"; RL Unpublished. XX RN [2] RP 1-2738 RA Sivalingam P.N., Malathi V.G., Varma A.; RT ; RL Submitted (07-OCT-2003) to the INSDC. RL Division of Plant Pathology, Indian Agricultural Research Institute, Pusa RL Road, New Delhi, Delhi 110012, India XX DR MD5; 92897cf2ed8be59cf2f6d5ec8cdd729b. DR EuropePMC; PMC3120783; 21496256. DR EuropePMC; PMC3550763; 23637479. DR EuropePMC; PMC3824786; 28324417. XX FH Key Location/Qualifiers FH FT source 1..2738 FT /organism="Tomato leaf curl New Delhi virus" FT /segment="DNA A" FT /isolate="ToLCNDV-AVT1" FT /mol_type="genomic DNA" FT /country="India:New Delhi" FT /db_xref="taxon:223347" FT gene 120..458 FT /gene="AV2" FT CDS 120..458 FT /codon_start=1 FT /gene="AV2" FT /product="AV2" FT /db_xref="GOA:Q6T885" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:Q6T885" FT /protein_id="AAR28537.1" FT /translation="MWDPLLHEFPESVHGLRCMLAVKYLQEIEKNYSPDTVGYDLVRDL FT ILVLRAKNYGEATSRYHHFNARIESTPSSQLRQPLWSSCSCPHCPRHKSKGLDKQADEQ FT KTQNVQNV" FT gene 280..1050 FT /gene="AV1" FT CDS 280..1050 FT /codon_start=1 FT /gene="AV1" FT /product="coat protein" FT /db_xref="GOA:Q6T884" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:Q6T884" FT /protein_id="AAR28536.1" FT /translation="MAKRPADIIISTPASKVRRRLNFDSPYGARAVVPIARVTKAKAWT FT NRPMNRKPRMYRMYRSPDVPRGCEGPCKVQSFESRHDVSHIGKVMCVSDVTRGTGLTHR FT VGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPTGSPQDFGEVFNMFDNEP FT STATVKNMHRDRYQVLRKWHATVTGGTYASREQALVRKFVRVNNYVVYNQQEAGKYENH FT TENALMLYMACTHASNPVYATLKIRIYFYDSVTN" FT gene complement(310..795) FT /gene="AC5" FT CDS complement(310..795) FT /codon_start=1 FT /gene="AC5" FT /product="AC5" FT /db_xref="InterPro:IPR006892" FT /db_xref="InterPro:IPR013671" FT /db_xref="UniProtKB/TrEMBL:Q6T883" FT /protein_id="AAR28542.1" FT /translation="MHVLHRCCARFIVKHVKNFPKILGGSCRTTVTDQKKHNTVSMVFR FT LDVFIHPYLPQHIDRFHTESLSYAMCESSSSGNITNAHDFANMRDIVPGFEGLHLARAF FT TSPWHVGTSIHSVHSGFSVHRPVCPGLCFCDAGNGDNCTSSIGAVEVETTAYFRCGR" FT gene complement(1160..1456) FT /gene="AC3" FT CDS complement(1160..1456) FT /codon_start=1 FT /gene="AC3" FT /product="AC3" FT /db_xref="GOA:Q6T882" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:Q6T882" FT /protein_id="AAR28540.1" FT /translation="MITDSRTGEYITADRAESGVYTWEIRNPLYFKILKHDSRPFLTQH FT DIIKIQIQFNHNLRKALGLHKCFLTFQIWTGLRPQIGIFLRVFKTQVLKYRIC" FT gene complement(1176..1595) FT /gene="AC2" FT CDS complement(1176..1595) FT /codon_start=1 FT /gene="AC2" FT /product="AC2" FT /db_xref="GOA:Q6T881" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:Q6T881" FT /protein_id="AAR28539.1" FT /translation="MQSSSHSKNHSIPVAKTSLPQKKKKSIRRRRVDLPCGCSYYVSIN FT CHDHGFTHRGIHHCGSSREWRIYLGNSKSPVFQNFETRQQALPNTARHNQDSNTIQPQP FT AESTGASQVFSNFPNLDGLTPSDWDFLESLQNPGP" FT gene complement(1614..2582) FT /gene="AC1" FT CDS complement(1614..2582) FT /codon_start=1 FT /gene="AC1" FT /product="Rep protein" FT /db_xref="GOA:Q6T880" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:Q6T880" FT /protein_id="AAR28538.1" FT /translation="MAPPSRFRINAKNYFLTYPKCSLTKEEALSQLQTLETPTSKKFIK FT ICRELHEDGSPHIHVLIQFEGKFQCKNNRFFDLVSPSRSTHFHPNIQGAKSASDVKAYI FT DKDGDILEWGVFQIDGRSARGGQQTANDAYAQAINTGNKEDAMKVLKELAPKDYVLQFH FT NLITNLDRIFQPRSEVYVSPFSISSFDRVPPELVDWVTSNVVCAAARPFRPISVVIEGD FT SRTGKTMWARCLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDW FT QSNTKYGKPVMIKGGIPTIFLCNKGPNSSYRNIWTKRRMPH" FT gene complement(2249..2554) FT /gene="AC4" FT CDS complement(2249..2554) FT /codon_start=1 FT /gene="AC4" FT /product="AC4" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:Q6T879" FT /protein_id="AAR28541.1" FT /translation="MRKTISSRIQSALLQRKRHFPNYKPSKPQLRRNSSRSVESFTRMG FT LRISMFSSNSKENSNAKITDSSTWCPQVGQHISIRTFRELNQHRTSKHTSTKTETF" XX SQ Sequence 2738 BP; 744 A; 590 C; 616 G; 788 T; 0 other; accgaatggc cgcgcaaatt tttatgtggg accgcgacca atgaaattca agcttcgtgg 60 cttatgtaat gcatggggtc ctttaaatag acttgctcac caagtttgga tccacaaaca 120 tgtgggatcc attattgcac gaatttccag aaagcgttca tggtctaagg tgcatgctag 180 ctgtaaaata tctccaagag atagaaaaga actattcccc agacacagtc ggatacgatc 240 ttgtccgaga tctcattctt gttctccgag caaagaacta tggcgaagcg accagcagat 300 atcatcattt caacgcccgc atcgaaagta cgccgtcgtc tcaacttcga cagcccctat 360 ggagctcgtg cagttgtccc cattgcccgc gtcacaaaag caaaggcctg gacaaacagg 420 ccgatgaaca gaaaacccag aatgtacaga atgtatagaa gtcccgacgt gccaagggga 480 tgtgaaggcc cttgcaaggt gcagtccttc gaatccaggc acgatgtctc tcatattggc 540 aaagtcatgt gcgttagtga tgttacccga ggaactggac tcacacatcg cgtaggaaag 600 cgattctgtg tgaaatctgt ctatgtgctg gggaagatat ggatggatga aaacatcaag 660 acgaaaaacc atactaacag tgttatgttt tttttggtcc gtgaccgtcg tcctacagga 720 tccccccaag attttgggga agtttttaac atgtttgaca atgaaccgag cacagcaacg 780 gtgaagaaca tgcatcgtga tcgttatcaa gtgttaagga agtggcatgc gactgtgacg 840 ggaggaacat atgcatctag ggagcaagca ttagttagga agtttgttag ggttaataat 900 tatgtcgttt acaatcaaca agaggccggc aagtatgaga atcatactga aaacgcatta 960 atgttgtaca tggcctgtac tcacgcatca aatcctgtat atgctacttt gaaaatccgg 1020 atctatttct atgattcggt cacaaattaa taaatatcga gttttatatc atatgaagtc 1080 catacatcaa tcgtctgttc caatacatta tccaatacat gataaactgc tcttattaca 1140 ttataaattc ctatgacacc taacatatcc ggtacttaag gacctgggtt ttgaagactc 1200 tcaagaaaat cccaatctga gggcgtaagc ccgtccagat ttggaaagtt agaaaacact 1260 tgtgaagccc cagtgctttc cgcaggttgt ggttgaattg tatttgaatc ttgattatgt 1320 cgtgctgtgt taggaagggc ctgctgtcgt gtttcaaaat tttgaaatac aggggatttc 1380 gaatttccca ggtatatacg ccactctctg ctcgatccgc agtgatgtat tcccctgtgc 1440 gtgaatccgt gatcatggca gttgattgat acgtaatacg aacaaccaca cggaagatca 1500 actcgcctcc tgcgaatgct cttcttcttc ttctggggga gcgatgtttt cgcgaccgga 1560 atagagtggt tcttcgagtg tgatgaagac tgcattcttg attgcccagt gcttcagtgc 1620 ggcattcttc tcttcgtcca gatattccta tagctgctgt tcggaccttt attgcacagg 1680 aatatagtgg gaattccacc tttaatcatg actggctttc cgtacttcgt gttgctttgc 1740 cagtcacgct gggcccccat gaattcttta aaatgcttta gatagtgggg atcaacgtca 1800 tcaatgacgt tgtaccaggc atcattgcta tacacctttg ggctgagatc tagatgtcca 1860 cacaagtaat tgtgtggtcc taagcaacga gcccacattg ttttgcccgt cctactatcc 1920 ccctctatga ctacacttat tggcctaaaa ggccgcgcag cggcacacac gacgttcgac 1980 gtgacccagt cgacgagttc tggcggaact ctgtcgaagg aagaaattga aaatggagag 2040 acgtaaacct ctgaacgagg ttgaaaaatg cgatctaaat ttgtaatcaa attgtgaaac 2100 tgcaaaacat agtcctttgg tgcaagttct tttaatactt tcatggcatc ttctttattt 2160 cctgtgttaa tcgcctgagc atatgcatcg ttcgccgttt gctgaccacc acgagcagat 2220 cgtccatcga tctggaaaac accccattct agaatgtctc cgtctttgtc gatgtatgct 2280 ttgacgtccg atgctgattt agctccctga atgttcggat ggaaatgtgt tgaccgactt 2340 ggggacacca agtcgaagaa tctgttattt ttgcattgga attttccttc gaattggatg 2400 agaacatgga tatgcggaga cccatcctcg tgaagctctc gacagatctt gatgaatttc 2460 ttcgaagttg gggtttcgag ggtttgtaat tgggaaagtg cctcttcctt tgtaagagag 2520 cactttggat acgtgaggaa atagtttttc gcatttattc taaaacgact tggcggagcc 2580 ataaaactag tcgtttcgat ccggtgtctc tcaactttct ctatgtaatt ggtgtctgga 2640 gtcccatata taggtaagac accatatggc agaattgtaa ttttgaaaag aaaattactt 2700 taattcaaat tccctaaagc ggccattcgt ataatatt 2738 //