ID   AY394721; SV 1; circular; genomic DNA; STD; VRL; 1988 BP.
XX
AC   AY394721;
XX
DT   01-OCT-2004 (Rel. 81, Created)
DT   25-MAY-2006 (Rel. 87, Last updated, Version 2)
XX
DE   Muscovy duck circovirus isolate TC1/2002, complete genome.
XX
KW   .
XX
OS   Muscovy duck circovirus
OC   Viruses; Circoviridae; Circovirus.
XX
RN   [1]
RP   1-1988
RX   DOI; 10.1637/7435-090705R1.1.
RX   PUBMED; 16617989.
RA   Chen C.-L., Wang P.-X., Lee M.-S., Shien J.-H., Shieh H.K., Ou S.-J.,
RA   Chen C.-H., Chang P.-C.;
RT   "Development of a polymerase chain reaction procedure for detection and
RT   differentiation of duck and goose circovirus";
RL   Avian Dis. 50(1):92-95(2006).
XX
RN   [2]
RP   1-1988
RA   Lee M.S., Ou S.C., Shien J.H.;
RT   ;
RL   Submitted (18-SEP-2003) to the INSDC.
RL   Epidemiology Research Department, National Institute for Animal Health,
RL   Chung-Cheng Rd., Tansui, Taiwan 25101, Republic of China
XX
DR   MD5; adad0b3954ede3739954202bc4b7b79c.
DR   EuropePMC; PMC3198713; 21978576.
DR   EuropePMC; PMC3497624; 23118461.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1988
FT                   /organism="Muscovy duck circovirus"
FT                   /isolate="TC1/2002"
FT                   /mol_type="genomic DNA"
FT                   /db_xref="taxon:257468"
FT   gene            48..926
FT                   /gene="rep"
FT   CDS             48..926
FT                   /codon_start=1
FT                   /gene="rep"
FT                   /product="Rep"
FT                   /db_xref="GOA:Q5WRK2"
FT                   /db_xref="InterPro:IPR000605"
FT                   /db_xref="InterPro:IPR003365"
FT                   /db_xref="InterPro:IPR027417"
FT                   /db_xref="UniProtKB/TrEMBL:Q5WRK2"
FT                   /protein_id="AAR28041.1"
FT                   /translation="MAKSGNYSYKRWVFTINNPTFEDYVHVLEFSTLDNCKFAIVGEEK
FT                   GANGTPHLQGFLNLRSNARAAALEESLGGRAWLSRARGSDEDNEEYCSKESTYLRVGEP
FT                   GGKGRSSQLADATSAVLAGLPLTDVARKYPTTYVIFGRGLERLRHLIVETQRDWKTEVI
FT                   VLIGPPGTGKSRYAFEFPAENKYYKPRGKWWDGYSGNDVVVMDDFYGWVPYDDLLRITD
FT                   RYPLRVEFKGGMTQFVAKTLITTSNKEPRDWYRSEFDLSALYRRINKYLVYNVDKYEPA
FT                   PACSLPFPINY"
FT   CDS             complement(136..399)
FT                   /codon_start=1
FT                   /product="ORFC2"
FT                   /db_xref="UniProtKB/TrEMBL:Q5WRK1"
FT                   /protein_id="AAR28042.1"
FT                   /translation="MSHRRAGRIDPYRLVHQLSGMSTLWSNILRYLRQIPGHERARLFL
FT                   PATLQGRQLSHCFGDSGIPEGEVYRSRPFPLRRLRTCNCRAC"
FT   CDS             complement(1151..1924)
FT                   /codon_start=1
FT                   /product="ORFC1"
FT                   /db_xref="GOA:Q5WRK0"
FT                   /db_xref="InterPro:IPR003383"
FT                   /db_xref="InterPro:IPR038652"
FT                   /db_xref="UniProtKB/TrEMBL:Q5WRK0"
FT                   /protein_id="AAR28043.1"
FT                   /translation="MRRSTYRRAYRARRRRRGLRRRFRRRRLRIGRPRRRFSVVTFKVT
FT                   RHTVFGFFGSGTGPTAAGRWQSLSLEDGAQYTDPPAQGNNICGLNMRWAMFGDTNSYMQ
FT                   GGKPQYHYPYDYYIIKGVAVTLRPAYNIYQKSKTQGSTIIDKDGQIVRTSTTGWAIDPY
FT                   GSTSSRRTWDPSRIHRRYFVPKPTIQGAGEGTKYSTFFLGGKNFTWINCSQDQVVHYGM
FT                   GMSLRKPDNATGDEGKYDIEAQFTFYIKFGQFTGF"
FT   CDS             1537..1794
FT                   /codon_start=1
FT                   /product="ORFV2"
FT                   /db_xref="UniProtKB/TrEMBL:Q5WRJ9"
FT                   /protein_id="AAR28044.1"
FT                   /translation="MLVSGSQQPLLLCSSRKGSGTVAYPLACSYLCLQTLPISCSVHRC
FT                   CFLVLVGLCIEPHLLDLSSAISPLPSVQFRIRKIQIRYVW"
XX
SQ   Sequence 1988 BP; 454 A; 477 C; 492 G; 565 T; 0 other;
     accggcgctt gtactccgta ctccagcaat ctacggcgag ccctgcaatg gctaagagtg        60
     gcaactactc ctacaaaagg tgggtcttta caattaataa ccctaccttt gaagattatg       120
     ttcatgtttt agagttcagc acgctcgaca attgcaagtt cgcaatcgtc ggagaggaaa       180
     agggcgcgaa cggtacacct caccttcagg gattcctgaa tctccgaagc aatgcgagag       240
     ctgccgccct tgaagagtcg ctgggaggaa gagcctggct ctctcgtgcc cggggatctg       300
     acgaagataa cgaagaatat tgctccaaag agtcgacata cctgagagtt ggtgaaccag       360
     gcggtaaggg tcgatcctcc cagctcgccg atgcgacatc cgctgtgctc gctggtctcc       420
     cgctgactga cgttgcccgg aagtatccga cgacttatgt tatctttggg cgtggcctcg       480
     aacgtcttcg tcacctgatc gttgaaacgc aacgtgattg gaagacagaa gtcatcgtct       540
     tgattggtcc gccagggacc ggaaagagcc gttatgcgtt tgaatttccc gccgaaaaca       600
     agtattacaa accacgcggg aagtggtggg acggttactc gggaaatgac gtagtcgtca       660
     tggacgactt ttatggttgg gtaccttacg atgatctgct tcggatcact gaccgttatc       720
     cgttacgtgt tgagtttaaa ggtggcatga cccagtttgt tgctaagacg ttgatcacaa       780
     ctagcaacaa agagccccgt gattggtata gaagtgagtt cgatctgtcc gccttatatc       840
     ggcgcattaa taagtatctt gtctataatg ttgacaagta tgaacctgcc cccgcttgtt       900
     ccctcccctt tccaataaac tactgagaca aagttgtcgt tttatgtctt tattaaggtg       960
     aacactcgaa agggatatac acttgggcag ctggttatgg tgaacacttg aaagggatat      1020
     acacttgggc agctggttat ggtgaacact cgaaagggat atacacttgg gcagctggtt      1080
     atggtgaaca ctcgaaaggg atatacactt gggcagctgg gttaaggtta ggacaggacc      1140
     acgtttatgc ctagaacccg gtgaactgac caaacttgat gtaaaacgta aattgagctt      1200
     ctatatcata tttcccctcg tcgccggtcg cattatctgg ttttctgagg ctcatgccca      1260
     tgccgtaatg tactacttgg tcttgactgc aatttatcca ggtgaagttt ttacctccta      1320
     ggaaaaatgt agaatacttg gtgccttctc ctgccccttg aattgttggt ttcggtacga      1380
     agtaccgtct gtggattctc gatgggtccc atgtcctcct gctgcttgtt gatccgtatg      1440
     ggtcaatggc ccatcctgta gttgatgtcc tcacgatttg cccgtccttg tcaatgatcg      1500
     ttgagccttg tgttttgctt ttttggtaaa tgttgtatgc tggtctcagg gtcacagcaa      1560
     ccccttttat tatgtagtag tcgtaagggt agtggtactg tggcttaccc ccttgcatgt      1620
     agctatttgt gtctccaaac attgcccatc tcatgttcag tccacagatg ttgtttcctt      1680
     gtgctggtgg gtctgtgtat tgagccccat cttctagact taagctctgc catctccccg      1740
     ctgccgtcgg tccagttccg gatccgaaaa atccaaatac ggtatgtctg gtgactttga      1800
     acgtcactac tgaaaatctt cgtcttggtc gtccgatacg tagccttcgt cttctgaatc      1860
     tcctacgtag accccgcctc ctcctcctag cacgatatgc acgccgatag gtgctgcgtc      1920
     gcatctgcag tgtgggcagt gacttcctgt aatgtataaa aagaccgcac aagcgccgtt      1980
     atattatt                                                               1988
//