ID AY388617; SV 1; circular; genomic DNA; STD; VRL; 4693 BP. XX AC AY388617; XX DT 27-MAY-2004 (Rel. 80, Created) DT 27-MAY-2004 (Rel. 80, Last updated, Version 1) XX DE Bovine adeno-associated virus, complete genome. XX KW . XX OS Bovine adeno-associated virus OC Viruses; Parvoviridae; Parvovirinae; Dependoparvovirus. XX RN [1] RP 1-4693 RX DOI; 10.1128/JVI.78.12.6509-6516.2004. RX PUBMED; 15163744. RA Schmidt M., Katano H., Bossis I., Chiorini J.A.; RT "Cloning and characterization of a bovine adeno-associated virus"; RL J. Virol. 78(12):6509-6516(2004). XX RN [2] RP 1-4693 RA Schmidt M., Bossis I., Chiorini J.A.; RT ; RL Submitted (11-SEP-2003) to the INSDC. RL NIDCR, NIH, 9000 Rockville Pike 10/1N112, Bethesda, MD 20892, USA XX DR MD5; b4c367da27a11b12851e205a98ecefca. DR EuropePMC; PMC1472158; 16699028. DR EuropePMC; PMC3181347; 21980506. DR EuropePMC; PMC416525; 15163744. DR EuropePMC; PMC4442534; 25740998. DR EuropePMC; PMC5772826; 27154756. XX FH Key Location/Qualifiers FH FT source 1..4693 FT /organism="Bovine adeno-associated virus" FT /mol_type="genomic DNA" FT /isolation_source="Bovine adenovirus 2 culture ATCC VR-314" FT /db_xref="taxon:256548" FT gene 368..2200 FT /gene="rep" FT CDS 368..2200 FT /codon_start=1 FT /gene="rep" FT /product="Rep" FT /db_xref="GOA:Q6JL80" FT /db_xref="InterPro:IPR001257" FT /db_xref="InterPro:IPR014015" FT /db_xref="InterPro:IPR014835" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:Q6JL80" FT /protein_id="AAR26464.1" FT /translation="MATFYEVIVRVPFDVEEHLPGISDNFVDWVTGQIWELPPESDLNL FT TLIEQPQLTVADRIRRVFLYEWNKFSKQESKFFVQFEKGSEYFHLHTLVETSGISSMVL FT GRYVSQIRAQLVKVVFQNIEPRINDWVAITKVKKGGANKVVDSGYIPAYLLPKVQPELQ FT WAWTNLEEYKLAALNLEERKRLVAQFQLESSQRSQEASSQRDVSADPVIKSKTSQKYMA FT LVSWLVEHGITSEKQWIQENQESYLSFNSTGNSRSQIKAALDNASKIMSLTKSASDYLV FT GQTVPEDISENRIWQIFDLNGYDPAYAGSVLYGWCTRAFGKRNTVWLYGPATTGKTNIA FT EAISHTVPFYGCVNWTNENFPFNDCVEKMLIWWEEGKMTSKVVEPAKAILGGSRVRVDQ FT KCKSSVQVDSTPVIITSNTNMCVVVDGNSTTFEHQQPLEDRMFRFELMRRLPPDFGKIT FT KQEVKDFFAWAKVNQVPVTHEFMVPKKVAGTERAETSRKRPLDDVTNTNYKSPEKRARL FT SVVPETPRSSDVPVEPAPLRPLNWSSRYECRCDYHAKFDSVTGECDECEYLNRGKNGCI FT FHNATHCQICHAVPPWEKENVSDFNDFDDCNKEQ" FT gene 2216..4426 FT /gene="cap" FT CDS 2216..4426 FT /codon_start=1 FT /gene="cap" FT /product="Cap" FT /note="capsid" FT /db_xref="GOA:Q6JL79" FT /db_xref="InterPro:IPR001403" FT /db_xref="InterPro:IPR013607" FT /db_xref="InterPro:IPR016184" FT /db_xref="InterPro:IPR036952" FT /db_xref="UniProtKB/TrEMBL:Q6JL79" FT /protein_id="AAR26465.1" FT /translation="MSFVDHPPDWLESIGDGFREFLGLEAGPPKPKANQQKQDNARGLV FT LPGYKYLGPGNGLDKGDPVNFADEVAREHDLSYQKQLEAGDNPYLKYNHADAEFQEKLA FT SDTSFGGNLGKAVFQAKKRILEPLGLVETPDKTAPAAKKRPLEQSPQEPDSSSGVGKKG FT KQPARKRLNFDDEPGAGDGPPPEGPSSGAMSTETEMRAAAGGNGGDAGQGAEGVGNASG FT DWHCDSTWSESHVTTTSTRTWVLPTYNNHLYLRLGSSNASDTFNGFSTPWGYFDFNRFH FT CHFSPRDWQRLINNHWGLRPKSMQVRIFNIQVKEVTTSNGETTVSNNLTSTVQIFADST FT YELPYVMDAGQEGSLPPFPNDVFMVPQYGYCGLVTGGSSQNQTDRNAFYCLEYFPSQML FT RTGNNFEMVYKFENVPFHSMYAHSQSLDRLMNPLLDQYLWELQSTTSGGTLNQGNSATN FT FAKLTKTNFSGYRKNWLPGPMMKQQRFSKTASQNYKIPQGRNNSLLHYETRTTLDGRWS FT NFAPGTAMATAANDATDFSQAQLIFAGPNITGNTTTDANNLMFTSEDELRATNPRDTDL FT FGHLATNQQNATTVPTVDDVDGVGVYPGMVWQDRDIYYQGPIWAKIPHTDGHFHPSPLI FT GGFGLKSPPPQIFIKNTPVPANPATTFSPARINSFITQYSTGQVAVKIEWEIQKERSKR FT WNPEVQFTSNYGAQDSLLWAPDNAGAYKEPRAIGSRYLTNHL" XX SQ Sequence 4693 BP; 1180 A; 1290 C; 1234 G; 989 T; 0 other; gtggcactcc cccccctgtc gcgttcgctc gttcgctggc tcgattgggg gggtggcagc 60 tcaaagagct gccagacgac ggccctctgg gccgtcgccc ccccaatcga gccagcgaac 120 gagcgaacgc gacagggggg ggagtgccac actctctagc aagggggttt tgtaggtggt 180 gatgtcattg ttgatgtcat tatagttgtc acgcgatagt taatgattaa cagtcatgtg 240 atgtgtgtta tccaatagga tgaaagcgcg cgaatgagat ctcgcgagac ttccggggta 300 taaaaggggt gagtgaacga gcccgccgcc attctctgct ctggactgct agaggaccct 360 cgctgccatg gctaccttct atgaagtcat tgttcgcgtt ccatttgatg tggaagagca 420 cctgcctgga atttctgaca actttgtaga ctgggtaact ggtcaaattt gggagctgcc 480 tcccgagtca gatttgaatt tgactctgat tgagcagcct cagctgacgg tggctgacag 540 aattcgccgc gtgttcctgt acgagtggaa caaattttcc aagcaggaga gcaaattctt 600 tgtgcagttt gaaaagggat ctgaatattt tcatctgcac acgctcgtgg agacctccgg 660 catctcttct atggtccttg gccgctacgt gagtcagatt cgcgcccagc tggtgaaggt 720 ggtgttccag aacattgagc cgcggattaa cgactgggtc gccatcacca aggtaaagaa 780 gggcggagcc aataaggtgg tggattctgg gtatattccc gcctacctgc tgccgaaggt 840 ccaaccagag cttcagtggg cgtggactaa cctcgaagag tataaattgg ccgccctcaa 900 tctggaggag cgcaaacggc tcgtcgctca gtttcagctt gagtcctcgc agcgctcgca 960 agaggcatct tcccagaggg acgtttcggc tgacccggtc atcaagagca agacttccca 1020 gaaatacatg gcgctggtaa gctggctggt ggaacatggc atcacttccg agaagcagtg 1080 gattcaggag aatcaggaga gctacctgtc cttcaactcc acgggaaact ctcggagcca 1140 gattaaagcc gcgcttgaca acgcgtcaaa aattatgagt ctgaccaaat ctgcctcaga 1200 ctatctcgtg ggacagactg ttccagagga catttctgaa aacagaatct ggcagatttt 1260 tgatctcaac ggctacgacc cggcatacgc gggctctgtt ctctacggct ggtgcactcg 1320 cgcctttgga aagaggaaca ccgtctggct gtatggaccc gcgaccaccg gaaagaccaa 1380 catcgcggaa gccatctctc acaccgtgcc cttttatggc tgtgtgaact ggactaatga 1440 gaactttccc tttaatgact gtgtggaaaa aatgttgatc tggtgggagg agggaaagat 1500 gaccagcaag gtggtggaac ccgccaaggc catcttgggg gggtctagag tacgagtgga 1560 tcaaaaatgt aaatcctctg tacaagtaga ctctaccccg gtgattatca cctccaatac 1620 taacatgtgt gtggtggtgg atgggaactc cacgaccttt gaacaccagc agccgctgga 1680 agaccgcatg ttcagatttg aactcatgcg gcggctcccg ccagattttg gcaagattac 1740 caagcaggaa gtcaaagact tttttgcttg ggcaaaggtc aaccaggtgc cggtgactca 1800 cgagtttatg gttcccaaga aagtggcggg aactgagagg gcggagactt ctagaaaacg 1860 cccactggat gacgtcacca ataccaacta taaaagtccg gagaagcggg cccggctctc 1920 agttgttcct gagacgcctc gcagttcaga cgtgcctgta gagcccgctc ctctgcgacc 1980 tctcaactgg tcttccaggt atgaatgcag atgtgactat catgctaaat ttgactctgt 2040 aacgggggaa tgtgacgagt gtgaatattt gaatcggggc aaaaatggct gtatctttca 2100 taatgctaca cattgtcaaa tttgtcacgc tgttcctcca tgggaaaagg aaaatgtgtc 2160 agattttaat gattttgatg actgtaataa agagcagtaa ataaagtgag tagtcatgtc 2220 ttttgttgac caccctccag attggttgga atcgatcggc gacggctttc gtgaatttct 2280 cggccttgag gcgggtcccc cgaaacccaa ggccaatcaa cagaagcaag ataacgctcg 2340 aggtcttgtg cttcctgggt acaagtatct tggtcctggg aacggccttg ataagggcga 2400 tcctgtcaat tttgctgacg aggttgcccg agagcacgac ctctcctacc agaaacagct 2460 tgaggcgggc gataaccctt acctcaagta caaccacgcg gacgcagagt ttcaggagaa 2520 actcgcttct gacacttctt ttgggggaaa ccttgggaag gctgttttcc aggctaaaaa 2580 gaggattctc gaacctcttg gcctggttga gacgccggat aaaacggcgc ctgcggcaaa 2640 aaagaggcct ctagagcaga gtcctcaaga gccagactcc tcgagcggag ttggcaagaa 2700 aggcaaacag cctgccagaa agagactcaa ctttgacgac gaacctggag ccggagacgg 2760 gcctccccca gaaggaccat cttccggagc tatgtctact gagactgaaa tgcgtgcagc 2820 agctggcgga aatggtggcg atgcgggaca aggtgccgag ggagtgggta atgcctccgg 2880 tgattggcat tgcgattcca cttggtcaga gagccacgtc accaccacct caacccgcac 2940 ctgggtcctg ccgacctaca acaaccacct gtacctgcgg ctcggctcga gcaacgccag 3000 cgacaccttc aacggattct ccaccccctg gggatacttt gactttaacc gcttccactg 3060 ccacttctcg ccaagagact ggcaaaggct catcaacaac cactggggac tgcgccccaa 3120 aagcatgcaa gtccgcatct tcaacatcca agttaaggag gtcacgacgt ctaacgggga 3180 gacgaccgta tccaacaacc tcaccagcac ggtccagatc tttgcggaca gcacgtacga 3240 gctcccgtac gtgatggatg caggtcagga gggcagcttg cctcctttcc ccaacgacgt 3300 gttcatggtg cctcagtacg ggtactgcgg actggtaacc ggaggcagct ctcaaaacca 3360 gacagacaga aatgccttct actgtctgga gtactttccc agccagatgc tgagaaccgg 3420 aaacaacttt gagatggtgt acaagtttga aaacgtgccc ttccactcca tgtacgctca 3480 cagccagagc ctggataggc tgatgaaccc gctgctggac cagtacctgt gggagctcca 3540 gtctaccacc tctggaggaa ctctcaacca gggcaattca gccaccaact ttgccaagct 3600 gaccaaaaca aacttttctg gctaccgcaa aaactggctc ccggggccca tgatgaagca 3660 gcagagattc tccaagactg ccagtcaaaa ctacaagatt ccccagggaa gaaacaacag 3720 tctgctccat tatgagacca gaactaccct cgacggaaga tggagcaatt ttgccccggg 3780 aacggccatg gcaaccgcag ccaacgacgc caccgacttc tctcaggccc agctcatctt 3840 tgcggggccc aacatcaccg gcaacaccac cacagatgcc aataacctga tgttcacttc 3900 agaagatgaa cttagggcca ccaacccccg ggacactgac ctgtttggcc acctggcaac 3960 caaccagcaa aacgccacca ccgttcctac cgtagacgac gtggacggag tcggcgtgta 4020 cccgggaatg gtgtggcagg acagagacat ttactaccaa gggcccattt gggccaaaat 4080 tccacacacg gatggacact ttcacccgtc tcctctcatt ggcggatttg gactgaaaag 4140 cccgcctcca caaatattca tcaaaaacac tcctgtaccc gccaatcccg caacgacctt 4200 ctctccggcc agaatcaaca gcttcatcac ccagtacagc accggacagg tggctgtcaa 4260 aatagaatgg gaaatccaga aggagcggtc caagagatgg aacccagagg tccagttcac 4320 gtccaactac ggagcacagg actcgcttct ctgggctccc gacaacgccg gagcctacaa 4380 agagcccagg gccattggat cccgatacct caccaaccac ctctagccca attctgttgc 4440 ataccctcaa taaaccgtgt attcgtttca gtaaaatact gcctcttgtg gtcattcggc 4500 gtacaacagc ttacaacaac aacaaaaccc ccttgctaga gagtgtggca ctcccccccc 4560 tgtcgcgttc gctcgttcgc tggctcgatt gggggggtgg cagctcaaag agctgccaga 4620 cgacggccct ctgggccgtc gcccccccaa tcgagccagc gaacgagcga acgcgacagg 4680 ggggggagtg cca 4693 //