ID AY363727; SV 1; linear; genomic RNA; STD; VRL; 3929 BP. XX AC AY363727; XX DT 02-SEP-2003 (Rel. 77, Created) DT 16-APR-2005 (Rel. 83, Last updated, Version 2) XX DE Tobacco ringspot virus RNA2 segment, complete sequence. XX KW . XX OS Tobacco ringspot virus OC Viruses; Riboviria; Picornavirales; Secoviridae; Comovirinae; Nepovirus. XX RN [1] RP 1-3929 RA Moon J.S., Domier L.L., Hartman G.L.; RT "Nucleotide sequence of Tobacco ringspot virus RNA2"; RL Unpublished. XX RN [2] RP 1-3929 RA Moon J.S., Domier L.L., Hartman G.L.; RT ; RL Submitted (07-AUG-2003) to the INSDC. RL ARS, USDA, 1102 S. Goodwin Ave., Urbana, IL 61801, USA XX DR MD5; 920d55a2508d2a4e03a4f09299bb053a. DR EuropePMC; PMC3314827; 22218961. XX FH Key Location/Qualifiers FH FT source 1..3929 FT /organism="Tobacco ringspot virus" FT /segment="RNA2" FT /mol_type="genomic RNA" FT /db_xref="taxon:12282" FT CDS 123..3428 FT /codon_start=1 FT /product="polyprotein" FT /db_xref="GOA:Q6UR06" FT /db_xref="InterPro:IPR005054" FT /db_xref="InterPro:IPR005305" FT /db_xref="InterPro:IPR005306" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/Swiss-Prot:Q6UR06" FT /protein_id="AAQ63694.1" FT /translation="MEPLLWHVDATTPSHIQALQSGSLPPASPAAALTRVQRALSFFRT FT AARKYCKQADAPDLFALAMTRVAEHNDIAVDARNVEQLFHFVGQHVANTAERKALRAAL FT REQRALFKASLPGACFPAPAPPGWGIPKPPPLPPPFVWKGCRYNVVAPPPRIPQPPPLP FT KFAPFVRNNFRVVAPPPLGEVYQPVGAPFPQTRASAALSFFRTASTCRQVLVESCIQQP FT AFMTCCASTGEVQEMTSMLTEARQTGKILTPKEVSQALAQKRKEIKGAEENRISFDEGV FT HLTEADVFHRLSLAKRFMAHKRDRTLVDVLMPTEHEVVRYPGTRPDGTLQMCVSALPRM FT SEEAARKLLEKGWKNSKNVSLDIGVTSYMPYGAPIVAFMTIMDGRTDDPQEAALCANYM FT DLGREKSKVLSLPLVTIPLSEIEHDQGILDCLYIVTYFHGVQSYQPGTLMMSYGTLEFQ FT EYSNNSFTTATRVRESWDQILKRNENLGKRVHAGIGVLGTIEKEMDQQLEDFPAINLET FT RPRPVVRTFQNAHQPLHKTRSMRIGTTSFTGNTGRTVLPPVVKTYEEGNANFDSLQSKP FT RHSSASTAHLMCAVTVVPDPTCCGTLSFKVPKDAKKGKHLGTFDIRQAIMEYGGLHSQE FT WCAKGIVNPTFTVRMHAPRNAFAGLSIACTFDDYKRIDLPALGNECPPSEMFELPTKVF FT MLKDADVHEWQFNYGELTGHGLCNWANVVTQPTLYFFVASTNQVTMAADWQCIVTMHVD FT MGPVIDRFELVPTMTWPIQLGDTFAIDRYYEAKEIKLDGSTSMLSISYNFGGPVKHSKK FT HAISYSRAVMSRNLGWSGTISGSVKSVSSLFCTASFVIFPWEHEAPPTLRQVLWGPHQI FT MHGDGQFEIAIKTRLHSAATTEEGFGRLGILPLSGPIAPDAHVGSYEFIVHIDTWRPDS FT QVHPPMFSSAELYNWFTLTNLKPDANTGVVNFDIPGYIHDFASKDATVTLASNPLSWLV FT AATGWHYGEVDLCISWPRSKQAQAQEGSVSITTNYRDWGAYWQGQARIYDLRRTEAEIP FT IFLGSYAGATPSGALGKQNYVRISIVNAKDIVALRVCLRPKSIKFWGRSATLF" XX SQ Sequence 3929 BP; 884 A; 957 C; 942 G; 1146 T; 0 other; ttgaaaattc tctcacaggg ttccggttac gttgttcttt tactctcttt ttattttaat 60 tgttcaaaat tgcgattctg aagcttccta ctttctggtg cccgcatttt ctctctgctc 120 cgatggagcc cctcttatgg cacgttgatg ccaccactcc ttcccacatc caggctctcc 180 agtcagggtc tctccctcct gcttctccgg ccgcggctct cacccgcgtc caacgcgccc 240 tttccttctt ccggactgct gcccggaagt actgcaagca ggccgatgcg cctgacttgt 300 ttgccctggc aatgaccagg gttgctgagc acaacgacat tgccgttgat gcaagaaatg 360 tggaacagct gttccacttt gttggccaac atgtggccaa cactgctgag cgcaaggcgc 420 tccgggctgc tcttcgtgag cagcgggctt tatttaaggc atccctgccc ggtgcctgtt 480 ttcctgctcc agctcctcca ggctggggta ttccaaaacc cccccctctt cctccacctt 540 ttgtgtggaa aggatgccgc tacaatgtgg tggcccctcc tccacgcatc ccgcaaccac 600 ctccactgcc taaatttgcg ccttttgtgc gcaacaactt tagagtggtt gctccccctc 660 cccttggtga ggtgtaccaa cccgttggtg cacctttccc acagacccgg gcctccgcgg 720 ccctctcctt ctttcgcact gcctccacct gcaggcaggt cttggttgag agctgcattc 780 agcagcccgc cttcatgact tgctgtgctt ctaccgggga agtgcaagaa atgacgagca 840 tgcttactga agctcgtcag actggaaaaa tcctgactcc caaagaggtg agtcaggcct 900 tggcccaaaa acgcaaagaa atcaaagggg ctgaggaaaa tcgcatctcc tttgatgaag 960 gggtgcattt gacagaggcg gatgtcttcc atcgtctcag tcttgcgaag cgcttcatgg 1020 cgcataagcg agaccggact ttggtggacg ttttaatgcc tactgaacat gaagttgttc 1080 ggtatccagg cacccgccct gacgggacat tgcagatgtg cgtgtctgcc cttccacgca 1140 tgtctgagga agcagctagg aagctgcttg agaaggggtg gaagaactcc aaaaacgtct 1200 ctctagacat tggggttact tcctatatgc catatggtgc gcccatagtt gcattcatga 1260 ctattatgga tgggcgtacc gatgatccac aagaggcagc actttgtgcg aattacatgg 1320 accttggtcg agaaaagtcc aaggtgttgt ctcttccact tgttaccatt cccctctctg 1380 agattgaaca tgatcaaggc attttggatt gcctttatat tgttacatat tttcatggtg 1440 ttcaatctta tcaacccgga actttaatga tgagttatgg aactcttgag tttcaagaat 1500 attccaataa ctcttttaca actgctactc gggttagaga gagttgggac cagattctca 1560 aacgcaatga gaatcttggg aaaagagtcc atgccggcat cggggtgctt ggcactattg 1620 aaaaagaaat ggaccagcaa cttgaggact tccccgccat aaatctggaa actaggccac 1680 ggcctgttgt gcgaactttt cagaatgcac atcagccgtt gcataagacc agatctatgc 1740 gaattggcac tacctctttt actgggaaca ctggtaggac tgtactccca ccagtggtta 1800 aaacctatga agagggaaat gctaattttg attccctaca atccaaacca cgtcacagct 1860 ctgccagcac tgctcatttg atgtgtgctg tgacggttgt tcccgatccc acttgttgtg 1920 ggacattgtc ctttaaggtt cccaaagatg cgaagaaagg aaagcatctt ggaacttttg 1980 acattcggca agccattatg gaatatggtg gtttgcattc ccaagaatgg tgtgcaaagg 2040 gcattgttaa tcccactttt acagtgagga tgcatgcccc acgcaacgcc tttgcaggtt 2100 tgtctatagc gtgcaccttt gatgattaca aacgcataga cttaccagcg cttgggaatg 2160 aatgtcctcc ctccgagatg tttgaactgc ctaccaaggt tttcatgctt aaagatgcag 2220 atgtgcatga atggcagttc aactatgggg aacttacagg acatgggttg tgcaattggg 2280 caaatgtagt tacccagccc acattgtact tttttgttgc gtccacaaat caagtgacga 2340 tggctgctga ttggcagtgt attgttacta tgcatgtgga catggggccc gtcattgatc 2400 gttttgagtt agttccaact atgacgtggc ctattcaatt gggtgacact ttcgccattg 2460 atagatatta tgaggcgaaa gaaattaaac ttgacgggtc aacctccatg ttgtccatat 2520 cttataattt tggaggtccc gtcaagcatt ctaagaaaca tgccatttca tattcccggg 2580 cagttatgtc taggaatctt gggtggtctg gcactataag cggaagtgtc aagagtgttt 2640 cttctttatt ttgtaccgct tcttttgtta tttttccatg ggaacatgaa gcacctccaa 2700 ccttacgtca ggtgttatgg ggcccacatc agataatgca cggagatggc caatttgaaa 2760 ttgctatcaa aactcgtctt cattcagctg ctacaactga agaagggttt ggtagacttg 2820 gtatactccc gctttctggg cctatagctc ctgatgcaca tgttggatcg tacgagttta 2880 ttgtacatat agacacttgg cgacccgact ctcaggtgca tcctcccatg ttttctagtg 2940 cggagcttta taattggttc actttaacca atttgaaacc agatgcgaac actggcgtag 3000 tcaactttga tattcccgga tacatccatg acttcgcctc taaggacgca actgtgacgc 3060 tcgcatcaaa tcccctctct tggcttgtcg cagctactgg ctggcattat ggtgaggtgg 3120 atctctgcat ctcctggcca aggtccaaac aggcccaggc tcaggagggt agtgtttcca 3180 ttaccactaa ttatagagat tggggtgctt actggcaagg ccaggcccgg atttatgatt 3240 tgcggcgtac tgaagcggaa attcccatct tcttgggttc ttacgctggt gcgacgccat 3300 ctggtgcctt gggtaagcaa aactatgtcc ggatttcaat tgtcaatgct aaggacatag 3360 ttgcactgcg agtgtgtttg cgacccaaat ctataaagtt ttggggtcgc tccgccactt 3420 tgttttaaat gcctttagtt aggtgttttg tccttttgat tcttcaaacc aggattggta 3480 gcccttttgg cattcatttg ctggaaacca tgctgtacat ggttggttag ataaaagcgt 3540 caataaaccg ggactttaat tagtcccgtt ttaggttcct gcccttacta gggtggtccg 3600 gtccttaggt ggatcgggaa gctgtataaa ctcagctttt tgggggtgag agcccaagaa 3660 tgtctgtctg tcagctgctt gtgtaaatga gctttctccc aggatagctc tcctgggcac 3720 aagtgaaaac tactgtcgtg gcgagttagt agccagacga ccggagtaaa atctctagtt 3780 aacaaaatgt gttagaccgt tgtttctggc agctttgttg ggtctgttgg gttttctaaa 3840 gctgctttgc tatttgctgt tgtttgagcc cactgttcat atttggtttg gggcctttta 3900 tgtttcgtag tgtcgtgttt gtccccccc 3929 //