Dbfetch
ID AY363228; SV 2; linear; genomic RNA; STD; VRL; 2245 BP. XX AC AY363228; XX DT 18-SEP-2003 (Rel. 77, Created) DT 07-APR-2010 (Rel. 104, Last updated, Version 4) XX DE Strawberry necrotic shock virus segment RNA 3, complete sequence. XX KW . XX OS Strawberry necrotic shock virus OC Viruses; Riboviria; Bromoviridae; Ilarvirus. XX RN [1] RP 1-2245 RX PUBMED; 15669110. RA Tzanetakis I.E., Mackey I.C., Martin R.R.; RT "Strawberry necrotic shock virus is a distinct virus and not a strain of RT Tobacco streak virus"; RL Arch. Virol. 149(10):2001-2011(2004). XX RN [2] RP 1-2245 RX DOI; 10.1007/s00705-010-0601-8. RX PUBMED; 20195656. RA Tzanetakis I.E., Martin R.R., Scott S.W.; RT "Genomic sequences of blackberry chlorotic ringspot virus and strawberry RT necrotic shock virus and the phylogeny of viruses in subgroup 1 of the RT genus Ilarvirus"; RL Arch. Virol. 155(4):557-561(2010). XX RN [3] RP 1-2245 RA Tzanetakis I.E., Mackey I.C., Martin R.R.; RT ; RL Submitted (06-AUG-2003) to the INSDC. RL Botany and Plant Pathology, Oregon State University and USDA/ARS - HCRL, RL 3420 Orchard Ave, Corvallis, OR 97330, USA XX RN [4] RC Sequence update by submitter RP 1-2245 RA Tzanetakis I.E., Mackey I.C., Martin R.R.; RT ; RL Submitted (05-DEC-2006) to the INSDC. RL Botany and Plant Pathology, Oregon State University and USDA/ARS - HCRL, RL 3420 Orchard Ave, Corvallis, OR 97330, USA XX DR MD5; c6051885459aeedc81372884e96104f2. XX CC On Dec 5, 2006 this sequence version replaced gi:34595682. XX FH Key Location/Qualifiers FH FT source 1..2245 FT /organism="Strawberry necrotic shock virus" FT /segment="RNA 3" FT /mol_type="genomic RNA" FT /country="USA:Maryland" FT /db_xref="taxon:243563" FT CDS 218..1114 FT /codon_start=1 FT /product="movement protein" FT /note="MP; 32.3 KDa" FT /db_xref="GOA:Q6URK2" FT /db_xref="InterPro:IPR002538" FT /db_xref="UniProtKB/TrEMBL:Q6URK2" FT /protein_id="AAQ76575.1" FT /translation="MALTPSFKALTFSADDESSLEKAVTEALSGSVELNMGIRRCAAFA FT AVNTEAFLCELTTKETKGFVSKFTDKVRGRVFVDHAVVHLMYIPVILNTTHAIADLKIK FT NLATGDELYGGTKVNLNEAFILTMTWPRSLFSDAVATHRGLYLGGTVSCASSVPKGAKI FT GMWYPMWTEKVSNKQLYQQTTPIVNTKALETFTRTMISSDKEMRSLLRSRASIDIAAKT FT KENPVICSPSVNLLDNQTSGVDFTVKRVSIPTVAAIQNNDDVEASGTSVLESKMIPIEH FT SDGNVGSNSAGRNLLTV" FT CDS 1288..1956 FT /codon_start=1 FT /product="coat protein" FT /note="CP; 24.4 KDa" FT /db_xref="GOA:Q6URK1" FT /db_xref="InterPro:IPR002681" FT /db_xref="InterPro:IPR016405" FT /db_xref="UniProtKB/TrEMBL:Q6URK1" FT /protein_id="AAQ76576.1" FT /translation="MSVNRGKNVLNNNSNGCPTCFDKLDAAATNCARCMRNGGVSNRQR FT RNARRAANFRNQRPVPVVPVSAPTTSKSLKLPGNQVWVTRKPSDWAAKTVDTNDAITLK FT TIFNGIPEINDDTKIFRVLIGFVAVSDGTFGLVDGVVGGSIPDPPIIGRLGFKKNTYRS FT RDFRFDGKLTPQVADKAIVWCLDSNRRDAKRVRLADFWIAISRPNPLMPPDEFLSGDSD FT " XX SQ Sequence 2245 BP; 597 A; 456 C; 529 G; 663 T; 0 other; gtattctctg agcataatac cacttgaaca atttgattcc gaagcggacg ctttccagtt 60 ttgaattcct acaaactgaa gcctttgggc tgatcaaatt gtcttgtcaa ttagatacca 120 ctatccgatc taaggatctt ccgatatata cactttccca agtgtcggtt gccgttggga 180 tcgattggtt aggaccgtca tctttaaatt ggttaagatg gctttgaccc cctcttttaa 240 ggctctgaca ttttctgctg atgatgaatc atcattggag aaggcagtta ctgaagcact 300 gtcaggatct gttgaactta acatggggat caggcggtgt gccgccttcg cagccgtaaa 360 cactgaagcg tttctttgtg aattaactac caaagaaacg aagggctttg tcagtaaatt 420 tactgacaag gtgcgtggtc gcgttttcgt tgatcacgct gttgtacatc ttatgtacat 480 tccagtgata ttgaatacca cccatgctat tgcagatttg aagattaaga atcttgcaac 540 gggtgatgaa ctctacggtg ggacgaaggt taatctgaat gaggctttca tattgactat 600 gacttggccg agatcattgt tttccgatgc tgttgcaacg catcgaggat tgtaccttgg 660 aggtactgtt tcgtgtgctt cttctgtgcc taaaggcgca aagataggga tgtggtaccc 720 catgtggact gaaaaggtgt cgaataaaca actgtatcag cagactacac ctatagttaa 780 cacaaaagcg ctcgaaactt tcactagaac aatgatcagt tcagataagg aaatgagaag 840 tctattgaga agtcgtgcct caattgacat agccgccaag acaaaagaga accctgttat 900 ttgttcaccc agtgtgaacc tgcttgacaa ccagacttct ggtgtggatt ttaccgttaa 960 gcgggtttca ataccgactg tggctgccat tcaaaataat gatgatgtgg aagcttccgg 1020 gacttcagtt ttggaatcaa aaatgattcc aattgaacat tccgatggaa atgttgggag 1080 taactcagca ggtaggaacc tgctgacagt ttaaagttgt tgtttgacat tccagacatg 1140 ggggtttctt ggaatatagg gactagtacc tcagagaatc ttgagtattt ctgtagtgaa 1200 ttcttggaaa tagataagct acttcttgag cctacctgag atgtatgatt actttgacca 1260 agaatccaga ccaaaccatc caacgccatg tctgttaaca gggggaagaa tgttttgaac 1320 aacaactcca atggttgccc aacttgtttt gacaagttgg atgccgctgc aactaattgc 1380 gcgagatgta tgcgcaatgg tggtgtttct aaccgccagc gcagaaatgc caggagggcc 1440 gcgaattttc gcaatcagag gcccgtgcct gtagttccag tttcggctcc cacgacttca 1500 aaatctttga agttacctgg gaatcaggtg tgggtcactc ggaaaccgag tgattgggcc 1560 gctaaaactg ttgataccaa cgatgctatc acgttgaaga ccatttttaa tggtattccc 1620 gaaatcaatg atgacacgaa gattttccgt gtcttaattg gttttgttgc cgtgtccgat 1680 gggacatttg gtttggtcga cggggttgtt gggggttcaa tccctgatcc tccaattatt 1740 ggaagattgg gatttaaaaa gaatacctac cgtagccgcg acttccgttt tgacggaaag 1800 ctcactccac aggttgctga taaagcaatc gtgtggtgcc tcgactctaa tcgtcgagat 1860 gccaaacggg ttagactggc tgatttttgg atcgccatat cacgacctaa tccgttgatg 1920 cctccagatg agtttctgtc aggggacagc gattgactgt ctccatcctc gagtttgatc 1980 tcgagttgcc tcacattaag aataattctt gtgtgagatg cggatatcac cctatgtatg 2040 ttgtagatca acatatatgg aagtgtgatg tgtgtcatca aagacactat gcatagttac 2100 cacgcatccg ggtgtaaatc tatgttatcc gtttagaaca ttccgaatcg gacgatttcc 2160 actctatgag tgagaccttt gggtcgatgt tctatgttgc cattaataat ttaaaattat 2220 taatgatgcc tccctaagga gatgc 2245 //