Dbfetch
ID AY358026; SV 2; linear; genomic RNA; STD; VRL; 7133 BP. XX AC AY358026; XX DT 28-AUG-2003 (Rel. 77, Created) DT 29-AUG-2003 (Rel. 77, Last updated, Version 2) XX DE Sabia virus, complete genome. XX KW . XX OS Sabia virus OC Viruses; Riboviria; Orthornavirae; Negarnaviricota; Polyploviricotina; OC Ellioviricetes; Bunyavirales; Arenaviridae; Mammarenavirus; OC Mammarenavirus brazilense. XX RN [1] RP 1-7133 RA Bowen M.D., Thurman K., Minor E., Meyer R.F., Malfatti S.A., Do L.H., RA Smith K.L., McCready P.M., Chain P.S.G.; RT ; RL Submitted (01-AUG-2003) to the INSDC. RL Viral Sequencing Group, Lawrence Livermore National Laboratory, 7000 East RL Avenue, Livermore, CA 94550, USA XX DR MD5; 71a023095c9b87eff4209ad499012c59. DR EuropePMC; PMC2680969; 19478873. DR EuropePMC; PMC3210867; 21982818. XX CC On Aug 27, 2003 this sequence version replaced AY358026.1. XX FH Key Location/Qualifiers FH FT source 1..7133 FT /organism="Sabia virus" FT /segment="L" FT /strain="SPH114202" FT /mol_type="genomic RNA" FT /note="large segment" FT /db_xref="taxon:2907957" FT primer_bind 1..20 FT CDS 75..377 FT /codon_start=1 FT /product="Z protein" FT /note="zinc finger protein" FT /db_xref="GOA:Q6UY62" FT /db_xref="InterPro:IPR003224" FT /db_xref="InterPro:IPR024183" FT /db_xref="InterPro:IPR038485" FT /db_xref="UniProtKB/Swiss-Prot:Q6UY62" FT /protein_id="AAQ55262.1" FT /translation="MGNSKSKSKLSANQYEQQTVNSTKQVAILKRQAEPSLYGRHNCRC FT CWFANTNLIKCSDHYICLKCLNIMLGKSSFCDICGEELPTSIVVPIEPSAPPPED" FT misc_feature 385..436 FT /note="hairpin intergenic region" FT CDS complement(448..7086) FT /codon_start=1 FT /product="L protein" FT /note="L polymerase" FT /db_xref="GOA:Q6UY61" FT /db_xref="InterPro:IPR007099" FT /db_xref="InterPro:IPR010453" FT /db_xref="InterPro:IPR026382" FT /db_xref="UniProtKB/Swiss-Prot:Q6UY61" FT /protein_id="AAQ55263.1" FT /translation="MQDPLLGTLSELKDLVRKTIPDVIELAYQKDALLSQVHPRSVLIE FT GFKLLSLLVELESCKVNACHHNYEQKFIDVILSDGGILCPTLPKVVPDGYNLMGKTLIL FT LETFVRVNPDDFEKKWKADMSKLISLKTDLGKIGVTLVPVVDGRSNYNTSFVSDWTTER FT LRWLLIEVLKGMKTTSELEIEEQEYHRLIHSLAKTNNQSLGFENLECLKRNMLSYDQLL FT DSSLLVGVKNDVKESKVMEELIRLKIWYKSEVYEKGLGKFVKTDKKVLLSQLITLGSHE FT ENDSLDCAFCSSRILELCFKLSVKMHEDVLTRGLNLDGTKTLHSSVQSYLNVLSMCNKI FT KGSKIFNTRRNTLLFLDLIMLNFVVDEMVKDSTVIRNLKNAGLIVGQMILLVNDRVLDI FT LTANKLIRQKLTTNEKWLSICSSVLKRYDLELWEKLCYLIRVPDFNELFQLAKELVSDR FT PMMRYSVHKAEERQCCHKAMENFTDDDFKIMLKALSHLSLGLINSMKTSFSSRLLINER FT DYSRYFGNVRLRECYIQRFPITNNIIGLLFYQKTGERSRCYSLYIAENGELTEIGSFYC FT DPKRYFVPIFSEAVITSMCEEMINWLNFDSELVRIVSTQLKTLMLLLLCSPSKRNQTFL FT QGLRYFIMAYVNQAHHIDLMSKLAVECKSSSEIQLQRLCVRLFVSILSGDNEIEYGFTR FT RFKFLLNISYLCHFITKETPDRLTDQIKCFEKFLEPKLKFNSVIVNPSLNGTLTESQEH FT QMISSIDRFFSKELLDQSDVKEPGVSRELLGYCVSLFNRGKLRVSGDLKVDPFRPTFTS FT TALDISSNKSVVVPKLDELGNIVDKYNKQLMVSSCVTSLVEMFKTKGRYNLDPDSIDFL FT VLKNLTNLVSANVPQEKSQEELSTLYEALTEDQISAFEQVRDEVQLALHKMKSSDAREE FT RLQDPKRNEKNASKGKILESLWSPHQVNRAIKNETSIHEIKDFDPDILDSHLVEKLCHE FT VYNSSQKSLFFLDEPLKSVPLEMLLINLTTIAYEEEEFFECFKYLLIQGDFDQKLGTYE FT HKSRSRLGLSSEALKVQENARVSTRESNAEAIAKKLDRTFFTSAALRNLCFYSEDSPTE FT FTSVSTNTGNLKFGLSYKEQVGSNRELYVGDLNTKLMTRLVEDFSEVVTGSMRFSCLNS FT EKEFERAICDMKMAVNNGDFSLSMDHSKWGPHMSPALFFTFLANLNLTEPKSRTRLNLD FT PLLNILKWHLHKTVEVPFNVAQAYCIGKLKRSLGLMECQCSSLTEEFYHSYLQIQDEIP FT SHIMSVLDMGQGILHNLSDLYALITEQFLNYVIHKLFDIDVTSYTSSDDQISIMKLPLS FT TKENDEDFDWLEIICFHEYLSSKLNKFVSPKSVVGNFVAEFKSRFFVMGEETPLLTKFV FT AAALHNVKCKTPTQLAETIDTICDQCVANGVGVDIVSRISERVNRLISYSGYKETPFLT FT IVNQDVKDWTDGSRGYRLQRNIENSFGNQELLRLIRRGARKVFLEIKKGHVFEENLIGL FT IGRGGDEALRGFLLYAGFAENDIVEALRHKWLNPSTFGDLRLVLRTKIMSSKRILERES FT VPSLIKTLQSRMSKNFIKGAKKILAESINKSAFQSSVASGFIGFCKSMGSKCVRDGKGG FT FMYLKELYNNVNKCGCCICLEWPGVVYCQDSLAKISQFARSILWDYFTLVLTNACEIGE FT WVFSDVKSPSAPPILSNPNLFWAVKPKIQKHIEDRLSLNHILHSIKRNYPYLFEEHLAP FT FMSDLQFNQMMNPSHVKFLDVCIALDMMNENLGIIGHLLRGRNHFIYIVKQSECASAHI FT RQSDYVDHELGLSPQQVCYNFKVQFLFSSMIDPLIVSTSTLKTFFWFNEVLSIEEEDQI FT DLGELTDFTLFIKTGHLNRAMTADDITMGYVCSNLAEEIITLNSYGSFQEFRSNHPSKN FT DLSDILKTLTSESIKLTLDIQIVHMRNSTKYNISRKIVYTLKALCALPLEDCFTKDPVA FT LVESLELFASGVNGGHLQLDGVTMVSVLPLLRGKKAVNLAQILMDNDLAATNDHNVMES FT VTLDFTKFHDELGDKFCYSLVGPEDQGNPIVLHNGMFMIDNQKLSYLKVEIFGDTIIKA FT LGALDSPREIGSLLHGLWPYLKATKQIINFDQTDFEMIYDLHRVVLLESIAQFGDWVEF FT ASFKVAFSKHYKDIVVADNLGNLRLKGVTCRLFRQQQSVEDIE" FT primer_bind complement(7115..7133) XX SQ Sequence 7133 BP; 2156 A; 1541 C; 1185 G; 2251 T; 0 other; gcgcacagtg gatcctaggc attgctttca cgctttgagg tgaaccacct cactggagca 60 ccagatttca tctaatgggt aactccaagt caaaatcaaa gctgtctgct aaccagtatg 120 aacagcaaac agtcaatagc accaaacagg tagccatttt aaagagacag gctgaaccta 180 gtctgtatgg aagacacaac tgcaggtgct gctggttcgc caatacaaat ctaataaaat 240 gttccgacca ttatatttgt ctaaaatgtt tgaacataat gttggggaag tcttcttttt 300 gtgacatttg tggtgaagag ctccccacat ccattgtggt gcccatcgaa ccaagtgctc 360 cacctccaga agactaaatc gtgtccgggt acacccccgg ggggccccac aggggccccc 420 cgcggggagt ccccggggtg gtgtggttta ctcaatgtct tcaacggact gctgctgtct 480 aaatagtctg caggtaacac ccttgagcct taagtttcct agattatcag caacaacaat 540 gtctttgtaa tgtttgctga atgcaacctt aaaactggca aattcaaccc aatctccaaa 600 ctgagcaatt gattccaaca aaacaactct gtgaagatca taaatcattt caaagtctgt 660 ttgatcaaaa ttaatgattt gcttggtagc cttcagataa ggccagagcc catgtagaag 720 actcccaatc tccctggggc tgtccagtgc cccaagtgcc ttaattatgg tgtcaccaaa 780 aatctccacc tttaagtaag acaacttctg attatcaatc ataaacatgc cgttgtggag 840 gacaattgga ttgccctggt cctcaggacc aactaatgag tagcagaatt tgtcacctag 900 ttcatcatga aatttggtga aatcaagtgt tacagattcc atcacattgt gatcattggt 960 cgcagctaaa tcgttatcca ttagaatctg agctaaattc actgccttct tccctctcag 1020 caaaggcaaa actgaaacca tggttacacc atccaactgc aggtgtcctc catttacacc 1080 agaagcaaac aactccaagg attccaccaa agccactggg tctttagtga agcagtcctc 1140 aagtggtaga gcacagagtg ccttaagagt ataaacaatc ttcctactaa tgttgtactt 1200 agtagaattt ctcatatgga caatttgtat gtctaatgtg agttttattg attcactagt 1260 gagagtcttt aagatgtctg ataaatcatt cttggatgga tgatttgatc tgaattcttg 1320 gaatgatcca taggaattca gtgtgattat ttcttctgcg aggttggaac acacataacc 1380 cattgttatg tcatcagctg tcatggccct attcagatgc cctgttttta taaacaatgt 1440 gaagtcagtc aattctccca aatctatctg atcttcttcc tctatactta aaacctcatt 1500 aaaccagaaa aatgtcttta atgttgacgt agaaactatg aggggatcaa tcatcgaaga 1560 aaacaaaaat tgaactttaa aattgtagca aacttgctga ggacttaaac caagctcatg 1620 gtccacatag tcagattgcc ttatgtgtgc agaagcacac tcactctgtt taactatgta 1680 tatgaaatga tttctaccac gcaaaagatg acctattatg cctagattct cattcatcat 1740 atccaatgct atacatacat ccaggaattt gacatgtgat gggttcatca tctgattgaa 1800 ttgcaaatca ctcataaacg gtgctagatg ttcttcaaat aaatagggat agttcctttt 1860 aatagagtgt aaaatatgat ttagacttag tctatcttca atatgttttt gaatcttggg 1920 cttgacagcc caaaagagat ttggattact taaaatagga ggtgcagaag gagatttcac 1980 atcagagaaa acccattctc cgatttcaca tgcgttagtg agaactaatg tgaagtaatc 2040 ccataaaata gatcttgcaa attgtgaaat ttttgctaga gaatcctgac agtaaacaac 2100 acctggccat tccaaacata tacagcatcc acacttattc acattattgt acaattcttt 2160 cagatacata aaacctcctt tgccgtctct cacacattta ctacccatac ttttacagaa 2220 ccctatgaaa cctgaggcca cagatgactg aaatgctgac ttatttattg attctgctaa 2280 aatctttttt gcccccttta taaagttctt tgacattctg gattgtagtg tctttatcag 2340 acttggtaca ctttctcttt ccaagattct tttactagac ataatttttg tccttaaaac 2400 cagtctcaaa tctccaaaag tggacggatt caaccattta tgccttaaag cctcaacaat 2460 gtcattttca gcaaatcctg catacaataa aaaccctctt aaagcttcat caccccccct 2520 gccaatcaaa ccaatcaaat tttcttcaaa cacatgaccc ttctttattt ccaaaaatac 2580 ttttcttgcc cccctcctta tcaaacgaag cagttcctga ttgccaaaag aattctctat 2640 atttctctgg agacgataac ccctcgatcc atctgtccaa tctttgacat cttggttgac 2700 aatggtcagg aaaggcgtct ctttatagcc agaatagcta atcaatcgat tcaccctctc 2760 tgatattctt gagacaatat ccactcctac accattggcc acacactgat cacaaatggt 2820 atcaatagtc tctgctaatt gagttggtgt tttacacttc acattatgta atgctgcggc 2880 cacaaacttg gtcaacaagg gagtttcctc acccattaca aaaaatctcg atttgaactc 2940 agcaacaaaa ttccccacca cactctttgg acttacaaat ttgttcaatt ttgaagatag 3000 gtactcatgg aaacagatga tttccaacca gtcaaaatct tcatcatttt cttttgtact 3060 cagtggcaat ttcatgattg aaatttggtc atcactagat gtgtaagaag tgacatcaat 3120 atcaaacagt ttgtgtatta cataattaag gaattgttca gttattaatg catacaagtc 3180 tgacaaattg tgtaggatgc cttggcccat gtcaagtaca gacattatat gacttgggat 3240 ttcatcttga atctgaaggt agctatgata aaattcctct gtgagacttg aacactgaca 3300 ttccatcaac ccaagacttc ttttaagctt ccctatacag taagcctgtg caacattaaa 3360 aggaacctct actgttttgt gtaagtgcca cttcagtata ttaagtaaag gatcaaggtt 3420 cagccttgtt ctactcttgg gctcagtaag attcaaattg gctaaaaatg taaaaaacag 3480 agcagggctc atgtggggtc cccactttga gtggtccatg gaaagactaa agtcaccatt 3540 gtttactgcc attttcatat cacaaattgc cctttcaaat tccttctcag aattcaaaca 3600 agagaacctc attgatcctg tgaccacttc tgagaaatcc tctaccaatc tagtcataag 3660 cttagtgtta agatctccca cataaagctc cctgttagac ccaacctgtt ctttataact 3720 taacccaaat ttcagattgc cagtgttggt gcttacacta gtgaattcag ttggggaatc 3780 ttctgagtaa aagcaaagat ttcgtaaagc tgcacttgta aagaaagttc tatcaagttt 3840 ttttgctatt gcctcagcat tgctttctct tgtgctaact cttgcattct cttgtacctt 3900 aagtgcctct gaactcagcc ctaatcttga tctactcttg tgttcatatg tacctagctt 3960 ttgatcaaag tctccttgta ttaataggta cttaaaacac tcaaagaact cttcctcttc 4020 ataggctatg gtagttaaat tgatcaacaa catttccaat ggaacagatt ttaacggttc 4080 atcaaggaaa aacagtgact tttgtgatga attatacacc tcatgacaaa gtttttcaac 4140 aagatgacta tctaaaatgt caggatcaaa atctttaatt tcatggattg aggtctcatt 4200 ttttatggct ctgtttacct gatgaggtga ccaaagagat tccagtatct tcccttttga 4260 tgcattcttc tcatttcttt ttggatcctg caacctttct tctctagcat ctgaactttt 4320 cattttgtgt aatgctaact gtacttcatc cctcacctgt tcgaatgcag aaatttggtc 4380 ctcagtcagt gcttcataca atgttgacaa ttcttcttga gacttttctt gaggtacatt 4440 tgcacttacc aagtttgtga ggttttttaa cacaaggaaa tcaatagaat caggatctaa 4500 attgtaccta cctttggtct taaacatttc tacaagtgat gtgacacatg atgataccat 4560 taactgttta ttatatttat ctacaatatt tccaagttca tctaattttg ggacaacaac 4620 acttttattg ctcgagatgt ctaaagcagt acttgtgaaa gtaggacgaa agggatctac 4680 tttcaaatcc cctgacactc tcaatttgcc tctattgaac aatgaaacac agtatccaag 4740 tagttctcta gagacaccag gctccttcac atcagattga tcaagcaact ctttggaaaa 4800 gaatctatca atactagaaa tcatttggtg ctcctgagat tctgtcaagg ttccgttcaa 4860 tgacggattc acaatgacac tattaaattt caatttgggt tccaagaatt tctcaaaaca 4920 tttaatttga tctgttagcc tatctggagt ttcttttgta ataaagtggc aaaggtaact 4980 aatgttcagt agaaacttga atcttcttgt gaacccatat tctatctcat tgtcaccaga 5040 taaaatcgaa acaaacaatc tgacacataa tctttgcaat tggatttctg agctagactt 5100 acactcaact gccaacttag acataaggtc aatgtggtgt gcttggttga catatgccat 5160 tataaaatac ctcaaacctt gaaggaatgt ctgatttctc ttcgaaggag aacagagcag 5220 tagtaacatg agtgttttta attgagtgga tactattctc accaactctg aatcaaagtt 5280 caaccagttg atcatttctt cacacattga tgtgatcaca gcttcagaaa aaataggcac 5340 aaagtatctt ttaggatcac agtaaaaaga tccgatctca gtcaactcac cattttctgc 5400 aatataaagt gagtaacatc tagatctttc tcctgtcttt tggtaaaaca gtaaacctat 5460 tatgttgttt gtgataggga atcgttggat ataacattcc ctaagtctca cattaccaaa 5520 atatcgtgaa taatctctct cattaataag taaccgagag gaaaatgatg tcttcattga 5580 attgatcaag cctaatgaaa gatgagacaa ggcctttaac attatcttga agtcatcgtc 5640 agtgaagttc tccattgctt tatggcaaca ttgtcgttcc tctgctttgt gaacagaata 5700 cctcatcata ggcctgtctg agactaactc ctttgcgagt tggaaaagtt cattaaagtc 5760 aggaactctt attaaataac acagcttttc ccagagctct aaatcatacc ttttaagaac 5820 actgctacaa attgaaagcc acttttcatt ggtggtcagt ttttgcctga tcaacttatt 5880 agcagtgagg atgtccaaca cccgatcatt gacaagtaat atcatttgtc caactattaa 5940 tcctgcattc tttaggttcc tgataactgt gctatctttt accatctcat caacaacgaa 6000 gttcaacatg attaagtcta aaaacaatag tgtgttcctc ctggtattaa agatctttga 6060 acctttaatc ttattgcaca tggacaacac attcaggtaa gattgcactg atgagtgtaa 6120 agttttagtc ccatcaaggt tcagccccct tgtgagcaca tcctcatgca tcttgactga 6180 taatttgaaa cacaactcca aaattctaga ggaacaaaag gcacagtcta ggctatcatt 6240 ctcctcatgg gagcctaatg tgattaactg agacagcagg acctttttgt ctgttttcac 6300 aaactttccc aaacctttct cataaacttc acttttgtac caaattttca atcttataag 6360 ctcctccatc acttttgatt ctttcacatc attcttaact ccaactaaca atgaggaatc 6420 cagcaactga tcataggata acatattcct cttgagacat tcaagatttt caaaaccaag 6480 gctttgattg ttggtcttgg ccaaactatg gattaatcta tgatattctt gttcttcaat 6540 ttctagttct gaagtagtct tcataccttt caacacctct attaacaacc acctcaacct 6600 ttctgtggtc caatcagaca cgaagctggt attgtaattg ctgcggccat ctacaacggg 6660 gactaatgta acacctatct tgcctaggtc tgtttttaga gagattaatt tgctcatatc 6720 agccttccat ttcttttcaa agtcgtctgg atttactcta acaaaagtct ccaacaagat 6780 gagagtcttt cccatcaggt tgtaaccatc tggcaccacc ttaggcagag ttggacagag 6840 aatgccacca tcggaaagaa tcacatctat aaatttttgt tcgtaattat gatggcatgc 6900 atttacctta caggactcca actccaccaa caaagataaa agtttaaacc cctcaattaa 6960 cactgatctt ggatgcactt gtgaaagtaa tgcgtccttt tgatatgcaa gctcaattac 7020 atctggtatg gtttttctaa ccaaatcctt taattcagac agggttccta agagggggtc 7080 ttgcatgact gccagaagtt taagttacgg ttctgcctag gatccactgt gcg 7133 //