ID AY358023; SV 2; linear; genomic RNA; STD; VRL; 3411 BP. XX AC AY358023; XX DT 28-AUG-2003 (Rel. 77, Created) DT 29-AUG-2003 (Rel. 77, Last updated, Version 2) XX DE Junin virus strain XJ13 segment S, complete sequence. XX KW . XX OS Argentinian mammarenavirus OC Viruses; Riboviria; Negarnaviricota; Polyploviricotina; Ellioviricetes; OC Bunyavirales; Arenaviridae; Mammarenavirus. XX RN [1] RP 1-3411 RA Bowen M.D., Thurman K., Minor E., Meyer R.F., Malfatti S.A., Do L.H., RA Smith K.L., McCready P.M., Chain P.S.G.; RT ; RL Submitted (01-AUG-2003) to the INSDC. RL Viral Sequencing Group, Lawrence Livermore National Laboratory, 7000 East RL Avenue, Livermore, CA 94550, USA XX DR MD5; 72ece229657d846866b92620dbbf72c7. DR EuropePMC; PMC2680969; 19478873. DR EuropePMC; PMC2700623; 18689636. DR EuropePMC; PMC3210867; 21982818. DR EuropePMC; PMC3233171; 21976641. DR EuropePMC; PMC3309595; 22377271. DR EuropePMC; PMC4111098; 24161346. XX CC On Aug 27, 2003 this sequence version replaced gi:33868612. XX FH Key Location/Qualifiers FH FT source 1..3411 FT /organism="Argentinian mammarenavirus" FT /segment="S" FT /strain="XJ13" FT /mol_type="genomic RNA" FT /note="small segment" FT /db_xref="taxon:2169991" FT primer_bind 1..20 FT gene 87..1544 FT /gene="GPC" FT CDS 87..1544 FT /codon_start=1 FT /gene="GPC" FT /product="glycoprotein precursor" FT /db_xref="GOA:Q6UY73" FT /db_xref="InterPro:IPR001535" FT /db_xref="UniProtKB/TrEMBL:Q6UY73" FT /protein_id="AAQ55251.1" FT /translation="MGQFISFMQEIPTFLQEALNIALVAVSLIAIIKGIVNLYKSGLFQ FT FFVFLALAGRSCTEEAFKIGLHTEFQTVSFSMVGLFSNNPHDLPLLCTLNKSHLYIKGG FT NASFQISFDDIAVLLPQYDVIIQHPADMSWCSKSDDQIWLSQWFMNAVGHDWHLDPPFL FT CRNRTKTEGFIFQVNTSKTGVNENYAKKFKTGMHHLYREYPDSCPNGKLCLMKAQPTSW FT PLQCPLDHVNTLHFLTRGKNIQLPRRSLKAFFSWSLTDSSGKDTPGGYCLEEWMLVAAK FT MKCFGNTAVAKCNLNHDSEFCDMLRLFDYNKNAIKTLNDETKKQVNLMGQTINALISDN FT LLMKNKIRELMSVPYCNYTKFWYVNHTLSGQHSLPRCWLIKNNSYLNISDFRNDWILES FT DFLISEMLSKEYSDRQGKTPLTLVDICFWSTVFFTASLFLHLVGIPTHRHIRGEACPLP FT HRLNSLGGCRCGKYPNLKKPTVWRRGH" FT mat_peptide 87..827 FT /gene="GPC" FT /product="glycoprotein G1" FT mat_peptide 828..1541 FT /gene="GPC" FT /product="glycoprotein G2" FT stem_loop 1562..1590 FT /note="hairpin loop structure" FT stem_loop 1593..1630 FT /note="hairpin loop structure" FT gene complement(1636..3330) FT /gene="N" FT CDS complement(1636..3330) FT /codon_start=1 FT /gene="N" FT /product="nucleocapsid protein" FT /db_xref="GOA:Q6UY72" FT /db_xref="InterPro:IPR000229" FT /db_xref="InterPro:IPR035083" FT /db_xref="InterPro:IPR035084" FT /db_xref="InterPro:IPR038115" FT /db_xref="UniProtKB/TrEMBL:Q6UY72" FT /protein_id="AAQ55252.1" FT /translation="MAHSKEVPSFRWTQSLRRGLSQFTQTVKSDVLKDAKLIADSIDFN FT QVAQVQRALRKTKKGEEDLNKLRDLNKEVDRLMSMRSVQRNTVFKVGDLGRDELMELAS FT DLEKLKNKIRRAETGSQGVYMGNLSQSQLAKRSEILRTLGFQQQGTGGNGVVRIWDVKD FT PSKLNNQFGSVPALTIACMTVQGGETMNSVIQALTSLGLLYTVKYPNLSDLDRLTQEHD FT CLQIVTKDESSINISGYNFSLSAAVKAGASILDGGNMLETIRVTPENFSSLIKSTIQVK FT RREGMFIDEKPGNRNPYENLLYKLCLSGDGWPYIGSRSQITGRSWDNTSIDLTRKPVAG FT PRQPEKNGQNLRLANLTEIQEAVIREAVGKLDPTNTLWLDIEGPATDPVEMALFQPAGK FT QYIHCFRKPHDEKGFKNGSRHSHGILMKDIEDAMPGVLSYVIGLLPPDMVVTTQGSDDI FT RKLFDLHGRRDLKLVDVKLTSEQARQFDQQVWEKYGHLCKYHNGVVVNKKKREKDTPFK FT LASSEPHCALLDCIMFQSVLDGKLYEEEPTPLLPPSLLFLPKAAYAL" FT primer_bind complement(3393..3411) XX SQ Sequence 3411 BP; 901 A; 789 C; 713 G; 1008 T; 0 other; gcgcacagtg gatcctaggc gattttggtt acgctataat tgtaactgtt ttctgtttgg 60 acaacatcaa aaacatccat tgcacaatgg ggcagttcat tagcttcatg caagaaatac 120 caaccttttt gcaggaggct ctgaacattg ctcttgttgc agtcagtctc attgccatca 180 ttaagggtat agtgaacttg tacaaaagtg gtttattcca attctttgta ttcctagcgc 240 ttgcaggaag atcctgcaca gaagaagctt tcaaaatcgg actgcacact gagttccaga 300 ctgtgtcctt ctcaatggtg ggtctctttt ccaacaatcc acatgaccta cctttgttgt 360 gtaccttaaa caagagccat ctttacatta aggggggcaa tgcttcattt cagatcagct 420 ttgatgatat tgcagtattg ttgccacagt atgatgttat aatacaacat ccagcagata 480 tgagctggtg ttccaaaagt gatgatcaaa tttggttgtc tcagtggttc atgaatgctg 540 tgggacatga ttggcatcta gacccaccat ttctgtgtag gaaccgtaca aagacagaag 600 gcttcatctt tcaagtcaac acctccaaga ctggtgttaa tgaaaattat gctaagaagt 660 ttaagactgg catgcatcat ttatatagag aatatcctga ctcttgcccg aatggcaaac 720 tgtgcttaat gaaggcacaa cctaccagtt ggcctctcca atgtccactc gaccacgtta 780 acacattaca cttccttaca agaggtaaaa acattcaact tccaaggagg tccttgaaag 840 cattcttctc ctggtctttg acagactcat ccggcaagga tacccctgga ggctattgtc 900 tagaagagtg gatgctcgta gcagccaaaa tgaagtgttt tggcaatact gctgtagcaa 960 aatgcaattt gaatcatgac tctgaattct gtgacatgtt gaggcttttt gattacaaca 1020 aaaatgctat caaaacccta aatgatgaaa ctaagaaaca agtaaatctg atggggcaga 1080 caatcaatgc cctgatatct gacaatttat tgatgaaaaa caaaattagg gaactgatga 1140 gtgtccctta ctgcaattac acaaaatttt ggtatgtcaa ccacacactt tcaggacaac 1200 actcattacc aaggtgctgg ttaataaaaa acaacagcta tttgaacatc tctgacttcc 1260 gtaatgactg gatattagaa agtgacttct taatttctga aatgctaagc aaagagtatt 1320 cggacaggca gggtaaaact cctttgactt tagttgacat ctgtttttgg agcacagtat 1380 tcttcacagc gtcactcttc cttcacttgg tgggtatacc cacccacaga cacatcaggg 1440 gcgaagcatg ccctttgcca cacaggttga acagcttggg tggttgcaga tgtggtaagt 1500 accccaatct aaagaaacca acagtttggc gtagaggaca ctaagacctc ctgagggtcc 1560 ccaccagccc gggcactgcc cgggctggtg tggcccccca gtccgcggcc tggccgcgga 1620 ctggggaggc actgcttaca gtgcataggc tgccttcggg aggaacagca agctcggtgg 1680 taatagaggt gtaggttcct cctcatagag cttcccatct agcactgact gaaacattat 1740 gcagtctagc agagcacagt gtggttcact ggaggccaac ttgaagggag tatccttttc 1800 cctctttttc ttattgacaa ccactccatt gtgatatttg cataagtgac catatttctc 1860 ccagacctgt tgatcaaact gcctggcttg ttcagatgtg agcttaacat caaccagttt 1920 aagatctctt cttccatgga ggtcaaacaa cttcctgatg tcatcggatc cttgagtagt 1980 cacaaccatg tctggaggca gcaagccgat cacgtaacta agaactcctg gcattgcatc 2040 ttctatgtcc ttcattaaga tgccgtgaga gtgtctgcta ccatttttaa accctttctc 2100 atcatgtggt tttctgaagc agtgaatgta ctgcttacct gcaggttgga ataatgccat 2160 ctcaacaggg tcagtggctg gtccttcaat gtcgagccaa agggtgttgg tggggtcgag 2220 tttccccact gcctctctga tgacagcttc ttgtatctct gtcaagttag ccaatctcaa 2280 attctgaccg tttttttccg gctgtctagg accagcaact ggtttccttg tcagatcaat 2340 acttgtgttg tcccatgacc tgcctgtgat ttgtgatcta gaaccaatat aaggccaacc 2400 atcgccagaa agacaaagtt tgtacaaaag gttttcataa ggatttctat tgcctggttt 2460 ctcatcaata aacatgcctt ctcttcgttt aacctgaatg gttgatttta tgagggaaga 2520 gaagttttct ggggtgactc tgattgtttc caacatgttt ccaccatcaa gaatagatgc 2580 tccagccttt actgcagctg aaagactgaa gttgtaacca gaaatattga tggagctttc 2640 atctttagtc acaatctgaa ggcagtcatg ttcctgagtc agtctgtcaa ggtcacttaa 2700 gtttggatac ttcacagtgt atagaagccc aagtgaggtt aaagcttgta tgacactgtt 2760 cattgtctca cctccttgaa cagtcatgca tgcaattgtc aatgcaggaa cagagccaaa 2820 ctgattgttt agctttgaag ggtctttaac atcccatatc ctcaccacac catttccccc 2880 agtcccttgc tgttgaaatc ccagtgttct caatatctct gatcttttag caagttgtga 2940 ctgggacaag ttacccatgt aaaccccctg agagcctgtc tctgctcttc ttatcttgtt 3000 ttttaatttc tcaaggtcag acgccaactc catcagttca tccctcccca gatctcccac 3060 cttgaaaact gtgtttcgtt gaacactcct catggacatg agtctgtcaa cctctttatt 3120 caggtccctc aacttattga ggtcttcttc ccccttttta gtctttctga gtgcccgctg 3180 cacctgtgcc acttggttga agtcgatgct gtcagcaatt agcttggcgt ccttcaaaac 3240 atctgacttg acagtctgag tgaattggct caaacctctc cttaaggact gagtccatct 3300 aaagcttgga acctccttgg agtgtgccat gccagaagtt ctggtgattt tgatctagaa 3360 tagagttgct cagtgaaagt gttagacact atgcctagga tccactgtgc g 3411 //