ID AY358022; SV 2; linear; genomic RNA; STD; VRL; 7114 BP. XX AC AY358022; XX DT 28-AUG-2003 (Rel. 77, Created) DT 29-AUG-2003 (Rel. 77, Last updated, Version 2) XX DE Junin virus strain XJ13 segment L, complete sequence. XX KW . XX OS Argentinian mammarenavirus OC Viruses; Riboviria; Negarnaviricota; Polyploviricotina; Ellioviricetes; OC Bunyavirales; Arenaviridae; Mammarenavirus. XX RN [1] RP 1-7114 RA Bowen M.D., Thurman K., Minor E., Meyer R.F., Malfatti S.A., Do L.H., RA Smith K.L., McCready P.M., Chain P.S.G.; RT ; RL Submitted (01-AUG-2003) to the INSDC. RL Viral Sequencing Group, Lawrence Livermore National Laboratory, 7000 East RL Avenue, Livermore, CA 94550, USA XX DR MD5; 0059442f952840fc64fb2ad01d7905de. DR EuropePMC; PMC2680969; 19478873. DR EuropePMC; PMC2700623; 18689636. DR EuropePMC; PMC2704760; 19420075. DR EuropePMC; PMC3210867; 21982818. XX CC On Aug 27, 2003 this sequence version replaced gi:33868609. XX FH Key Location/Qualifiers FH FT source 1..7114 FT /organism="Argentinian mammarenavirus" FT /segment="L" FT /strain="XJ13" FT /mol_type="genomic RNA" FT /note="large segment" FT /db_xref="taxon:2169991" FT primer_bind 1..20 FT CDS 84..368 FT /codon_start=1 FT /product="Z protein" FT /note="zinc finger protein" FT /db_xref="GOA:Q6UY75" FT /db_xref="InterPro:IPR003224" FT /db_xref="InterPro:IPR024183" FT /db_xref="InterPro:IPR038485" FT /db_xref="UniProtKB/TrEMBL:Q6UY75" FT /protein_id="AAQ55249.1" FT /translation="MGNCNGASKSNQPDSSRATQPAAEFRRVAHSSLYGRYNCKCCWFA FT DTNLITCNDHYLCLRCHQGMLRNSDLCNICWKPLPTTITVPVEPTAPPP" FT misc_feature 395..441 FT /note="hairpin intergenic region" FT CDS complement(452..7084) FT /codon_start=1 FT /product="L protein" FT /note="L polymerase" FT /db_xref="GOA:Q6UY74" FT /db_xref="InterPro:IPR007099" FT /db_xref="InterPro:IPR010453" FT /db_xref="InterPro:IPR026382" FT /db_xref="UniProtKB/TrEMBL:Q6UY74" FT /protein_id="AAQ55250.1" FT /translation="MEESVNEIKSLIRKHFPERQELAYQRDIFLSQHHPSSLLLEGFKL FT LSSLVELESCEAHACQINSDQKFVDVILSDHGILCPTLPKVIPDGFKLTGKTLILLETF FT VRVNPDEFERKWKSDMSKLLNLKSDLLRAGITLVPVVDGRSSYSNRFLADWVVERVRWL FT LIDILKKSKFMQEINIEEQEYQRLIHSLSNTKNQSLGLENIECLKKNSLGYDERLNESL FT FVGVRGDIRESVIREELIKLRFWFKKEIFDKQLGKFKFSQKSKLINDLILLGSHKDSDV FT PSCPFCANKLMDVVYSIALHPIDEVNMESQSDENSISIDAVERCYLQALSVCNKVKGLK FT VFNTRRNTLLFLDLVLLNLLCDLFKTHDDAIVRLRNAGIVVGQMLMLVNDRLLDILEAI FT KLIRKKLMTSPKWVQVCSRTLKNSHQDLWSQLEKLIKHPDMDSLMILAQALVSDRPVMR FT YTIDKEFEKICRHQPFSSLVEGEQKKLFRILSSISLALVNSMKTSFSSRLLINEREYSR FT YFGNVRLRECYVQRFHLTKNTFGLLFYQKTGEKSRCYSIYLSINGVLEEQGSFYCDPKR FT FFLPIFSEDVLIEMCEEMTSWLDFSHELMTMTRPILRLLVLAVLCSPSKRNQTFLQGLR FT YFLMAYANQIHHVDLMSKLRVDCMSGSEVLIQRMAVELFQTILGEGEDADLYFARRFKY FT LLNVSYLCHLVTKETPDRLTDQIKCFEKFIEPKVKFDCVVVNPPLSGSLTLEQEDTMIR FT GLDRFFSKEAKTSSDTQIPGVCKEILSFCISLFNRGRLKVTGELKSNPYRPNITSTALD FT LSSNKSVVIPKLDELGNILSVYDKEKLVSTCVSTMAERFKTKGRYNLDPDSMDYLILKN FT LTGLVSTGSRTRTNQEELSVMYESLTEDQVRAFEGIRNDVQMTLAKMANSEGTKVEITK FT LKSKNLSVDERESLESLWAPFGVLREIKAEVSMHEVKDFDPDVLRSDVYKELCDAVYLS FT PFKLTYFLEAPQDICPLGLLLKNLTTIAYQEDEFFECFKYLLIQGHYDQKLGSYEHRSR FT SRLGFSSEVLRLKDEVRLSTRESNSEAIADKLDKSYFTNAALRNLCFYSDDSPTEFTSI FT SSNTGNLKFGLSYKEQVGSNRELYVGDLNTKLMTRLVEDFSEAVGSSMRYTCLNSEKEF FT ERAICDMKMAVNNGDLSCSYDHSKWGPTMSPALFLSFLYTLELKNPRDRTKVNLEPVMN FT ILKWHLHKVVEVPINVAEAYCVGKLKRSLGLMGCDCTSVGEEFFHQYLQSRDQVPSHIM FT SVLDMGQGILHNTSDLYGLITEQFLCYALDLLYDVIPVTYTSSDDQVSLIKIPCLSDEK FT FQDRTELLEMVCFHEFLSSKLNKFISPKSVIGTFVAEFKSRFFVMGEETPLLTKFVSAA FT LHNVKCKTPTQLSETIDTICDQCIANGVSTHIVSKISIRVNQLIRYSGYRETPFGAIEE FT QDVKDWVDGSRGYRLQRKIEAIFSDDKETMFIRNCARKVFNDIKRGKIFEENLINLISR FT GGDEALSGFLQYAGCSEDEIRQTLDYRWVNLASFGDLRLVLRTKLMTSRRVLEKEEMPT FT LIRTIQSRLSRNFTKGVKKILAESINKSAFQSSVASGFIGFCKSMGSKCVRDGKGGFLY FT IKDIFTRIMPCLCGICERKPKVIYCQKSLKEVNQFSKPILWDYFSLVLTNACELGEWVF FT SAIKSPQAPLVLCNKNFFWAVKPKAVRQIEDQLGMNHVLHSIRRNYPKLFEEHLAPFMN FT DLQVNRSLDSGRLKFLDVCVALDMMNENLGIISHLLKVRDNNVYIVKQSDCASAHVRQS FT EYTNWEVGISPQQVCRNFMVQVVLSSMINPLVMSTSCLKSFFWFNEVLDLEDDSQVDLA FT ELTDFTLSIRNNKVSRAMFVEDIAMGYVVSSFDNIKVFLEGVSVDNISLLPQEDMMDLH FT TVLRNVACQEAVKLKLIIQVEHTRVSTKFKLRRKMVYSYTIVSSLGVDDVGTPELELNV FT DAMSQCVSGSEGSHSLLDGALVIASLPLFTGHESFDLAGLFIDAGYAATNDDNILSHVK FT FNFGDFYSELSNKYAYDLIGPDNPGEPLVLKEGIFYRGNERLSTYRVELSGDVIVKAIG FT ALEDIDSVETLLSQLWPYLKTTSQTILFQQEDFVLVYDLHKEQLIRSLDKFGDWLEFSN FT FKVAFSRSLNDLLISDPQGQFRLKGVTCRPLKHKVEIKDID" FT primer_bind complement(7096..7114) XX SQ Sequence 7114 BP; 2069 A; 1627 C; 1248 G; 2170 T; 0 other; gcgcacagtg gatcctaggc gtaacttcat cattaaatct cagattctgc tctgagtgtg 60 acttactgcg aagaggcaga caaatgggca actgcaacgg ggcatccaag tctaaccagc 120 cagactcctc aagagccaca cagccagccg cagaatttag gagggtagct cacagcagtc 180 tatatggtag atataactgt aagtgctgct ggtttgctga taccaatttg ataacctgta 240 atgatcacta cctttgttta aggtgccatc agggtatgtt aaggaattca gatctctgca 300 atatctgctg gaagcccctg cccaccacaa tcacagtacc ggtggagcca acagcaccac 360 caccataggc agactgcaca gggtcagacc cgaccccccg gggggccccc atggggaccc 420 cccgtggggg aaccccgggg gtgatgcgcc attagtcaat gtctttgatc tcgactttgt 480 gcttcagtgg cctgcatgtc acccctttca atctgaactg cccttgggga tctgatatca 540 gcaggtcatt taaagatctg ctgaatgcca ccttgaaatt tgagaattcc aaccagtcac 600 caaatttatc aagtgaacgg atcaactgct ctttgtgtag atcataaacg aggacaaagt 660 cctcttgctg aaataatatt gtttgtgatg ttgtttttag ataaggccat agttggctta 720 ataaggtttc cacactatca atgtcctcta gtgctccaat tgccttgact atgacatccc 780 cagacaactc aactctatat gttgacaacc tttcattacc tctgtaaaag ataccctctt 840 tcaagacaag aggttctcct gggttatctg gcccaatgag gtcatatgca tacttgttac 900 ttagttcaga ataaaagtca ccaaagttga acttaacatg gctcagaata ttgtcatcat 960 ttgtcgcagc gtagcctgca tcaataaaca agccagctag gtcaaagctc tcatggcctg 1020 tgaacaatgg taggctagcg ataaccagtg caccatccaa caatgagtgg cttccctcag 1080 acccagaaac acattgactc attgcatcca cattcagctc taattcaggg gtaccgacat 1140 catccactcc tagtgaactg acaatggtgt aactgtacac catctttctt ctaagtttaa 1200 attttgtcga aactcgtgtg tgttctactt gaatgatcaa ttttagtttc acagcttctt 1260 ggcaagcaac attgcgcaac acagtgtgca ggtccatcat gtcttcctga ggcaacaagg 1320 agatgttgtc aacagagaca ccctcaagga aaaccttgat attatcaaag ctagaaacta 1380 cataacccat tgcaatgtct tcaacaaaca ttgctcttga tactttatta ttcctaattg 1440 acaaggtaaa atctgtgagt tcagctagat ctacttgact gtcatcttct agatctagaa 1500 cttcattgaa ccaaaagaag gatttgagac acgatgttga catgactagt gggtttatca 1560 tcgaagataa gacaacttgc accatgaagt tcctgcaaac ttgctgtggg ctgatgccaa 1620 cttcccaatt tgtatactct gactgtctaa catgggctga agcgcaatca ctctgtttca 1680 caatataaac attattatct cttactttca ataagtgact tataatccct aagttttcat 1740 tcatcatgtc tagagccaca cagacatcta gaaacttgag tcttccacta tccaaagatc 1800 tgttcacttg aagatcattc ataaagggtg ccaaatgttc ttcaaatagt ttggggtaat 1860 ttcttcgtat agaatgcaat acatggttca tgcctaattg gtcttctatc tgtcgtactg 1920 ctttgggttt aacagcccag aagaaattct tattacataa gaccagaggg gcctgtggac 1980 tcttaatagc agaaaacacc cactccccta actcacaggc atttgtcagc accaaagaga 2040 agtaatccca caaaattggt ttagaaaatt ggttaacttc tttaagtgat ttttgacagt 2100 aaataacttt aggctttctc tcacaaattc cacaaagaca tggcattatt cgagtaaata 2160 tgtcctttat atacagaaat ccgcctttac catccctaac acacttactc cccatactct 2220 tacaaaaccc aatgaagcct gaggcaacag aagactgaaa tgcagatttg ttgattgact 2280 ctgccaagat cttcttcacg ccttttgtga aatttcttga cagcctggac tgtattgtcc 2340 ttatcaatgt tggcatctct tctttctcta acactcttcg acttgtcatg agtttggtcc 2400 tcaagaccaa cctcaagtcc ccaaagctcg ctaaattgac ccatctgtag tctagagttt 2460 gtctgatttc atcttcacta cacccggcat attgcaggaa tccggataaa gcctcatccc 2520 ctcccctgct tatcaagttg ataaggtttt cctcaaagat tttgcctctc ttaatgtcat 2580 taaacacttt cctcgcgcag ttccttataa acattgtctc cttatcatca gaaaaaatag 2640 cttcaatttt cctctgtaga cggtaccctc tagacccatc aacccagtct ttgacatctt 2700 gttcttcaat agctccaaac ggagtctctc tgtatccaga gtatctaatc aattggttga 2760 ctctaatgga aatctttgac actatatgag tgctaacccc attagcaata cattgatcac 2820 aaattgtgtc tatagtctct gacagttgtg ttggagtttt acacttaaca ttgtgtagag 2880 cagcagacac aaacttggtg agtaaaggag tctcttcacc catgacaaaa aatcttgact 2940 taaactcagc aacaaaagtt cctatcacac tctttgggct gataaacttg tttaatttag 3000 aagataagaa ttcatggaag cacaccattt ccagcagttc tgtcctgtct tgaaactttt 3060 catcactaag gcaaggaatt tttataaggc taacctggtc atcgctggag gtataagtga 3120 caggtatcac atcatacaat aagtcaagtg cataacacag aaattgttca gtaattagcc 3180 catataaatc tgatgtgttg tgcaagattc cctggcccat gtccaagaca gacattatat 3240 ggctggggac ctggtccctt gactgcagat actggtgaaa aaactcttca ccaacactag 3300 tacagtcaca acccattaaa cctaaagatc tcttcaattt ccctacacag taggcttctg 3360 caacattaat tggaacttca acgaccttat gaagatgcca tttgagaatg ttcattactg 3420 gttcaagatt cacctttgtt ctatctctgg gattcttcaa ttctaatgtg tacaaaaaag 3480 aaaggaaaag tgctgggctc atagttggtc cccatttgga gtggtcatat gaacaggaca 3540 agtcaccatt gttaacagcc attttcatat cacagattgc acgttcgaat tccttttctg 3600 aattcaagca tgtgtatctc attgaactac ccacagcttc tgagaagtct tcaactaacc 3660 tggtcatcag cttagtgttg aggtctccca catacagttc tctatttgag ccaacctgct 3720 ccttataact tagtccaaat ttcaagttcc ctgtatttga gctgatgctt gtgaactctg 3780 taggagagtc gtctgaatag aaacataaat tccgtagggc tgcatttgta aaataacttt 3840 tgtctagctt atcagcaatg gcttcagaat tgctttccct ggtactaagc cgaacctcat 3900 cctttagtct cagaacttca ctggaaaagc ccaatctaga tctacttcta tgctcataac 3960 tacccaattt ctgatcataa tgtccttgaa ttaaaagata cttgaagcat tcaaagaatt 4020 catcttcttg gtaggctatt gttgtcaaat tttttaataa caaacccaaa gggcagatgt 4080 cctgcggtgc ttcaagaaaa taagtcaatt taaatggaga tagataaaca gcatcacata 4140 actctttata cacatcagac ctgagcacat ctggatcaaa atccttcacc tcatgcattg 4200 acacctctgc tttaatctct ctcaacactc caaaaggggc ccacaatgac tcaagagact 4260 ctcgctcatc aacagataga ttctttgatt tcaacttggt gatctcaact tttgtcccct 4320 cactattagc catcttggct agtgtcattt gtacgtcatt tctaataccc tcaaaggccc 4380 ttacttgatc ctctgttaaa ctctcataca tcactgataa ttcttcttga ttggttctgg 4440 ttcttgaacc ggtgctcaca agacctgtta gattttttaa tattaagtag tccatggaat 4500 caggatcaag attatacctg ccttttgttt taaacctctc agccatagta gaaacgcatg 4560 ttgaaacaag tttctcctta tcataaacag aaagaatatt tccaagttcg tcgagcttgg 4620 ggattaccac acttttattg cttgacagat ccagagctgt gctagtgatg ttaggcctgt 4680 agggattgct tttcagttca cctgtaactt taagtcttcc tctattgaag agagaaatgc 4740 agaaggacaa aatctcttta cacactcctg gaatttgagt atctgaggaa gtcttagcct 4800 ctttggaaaa gaatctgtcc aatcctctta tcatggtgtc ctcttgttcc agtgttagac 4860 tcccacttag aggggggttt acaacaacac aatcaaactt gactttgggc tcaataaact 4920 tctcaaaaca ctttatttga tctgtcaggc gatcaggtgt ctctttggtt accaagtgac 4980 acagataact aacatttaat agatatttaa accttcttgc aaagtaaaga tctgcatctt 5040 ccccttcacc caaaattgtc tggaaaagtt ccacagccat cctctgaatc agcacctctg 5100 atccagacat gcagtcgacc cttaactttg acatcaaatc cacatgatgg atttgatttg 5160 catatgccat caagaaatat cttagacctt gtaaaaatgt ctggttcctt ttggaagggg 5220 aacagagtac agctaacact aacaatctta atattggcct tgtcattgtc atgagttcgt 5280 ggctaaaatc caaccagctg gtcatttcct cacacatttc aattaacaca tcctccgaaa 5340 atataggcag gaaaaatctc tttggatcac agtaaaaaga gccttgttct tccaataccc 5400 cattgatgga tagatagata gaatagcacc ttgacttctc acctgttttt tggtaaaaca 5460 agagaccaaa tgtgttcttt gtcagatgaa atctttgtac ataacactct cttagtctaa 5520 cattcccaaa atatctagaa tactctcttt cattgattaa caatcgggag gaaaatgatg 5580 tcttcatcga gttgaccaat gcaagggaaa tggaggacaa aatcctaaat aatttcttct 5640 gctcaccttc cactaagctg ctgaatggct gatgtctaca gattttctca aattccttgt 5700 caatagtata tctcatcact ggtctgtcag aaacaagtgc ctgagctaaa atcatcaagc 5760 tatccatatc agggtgtttt attagttttt ccagctgtga ccagagatct tgatgagagt 5820 tcttcaatgt tctggaacac acttgaaccc acttggggct ggtcatcaat ttcttcctta 5880 ttagtttaat cgcctccaga atatctagaa gtctgtcatt gactaacatt aacatttgtc 5940 caacaactat tcccgcattt cttagcctta caattgcatc atcatgcgtt ttgaaaagat 6000 cacaaagtaa attgagtaaa actaagtcca gaaacagtaa agtgtttctc ctggtgttga 6060 aaacttttag acctttcact ttgttacaca cggaaagggc ttgaagataa cacctctcta 6120 cagcatcaat agatatagaa ttctcatctg actggctttc catgttgact tcatctattg 6180 gatgcaatgc gatagagtag actacatcca tcaacttgtt tgcacaaaaa gggcagctgg 6240 gcacatcact gtctttgtgg cttcctaata agatcaagtc atttataagc ttagactttt 6300 gtgaaaattt gaatttcccc aactgcttgt caaaaatctc cttcttaaac caaaacctta 6360 actttatgag ttcttctctt atgacagatt ctctaatgtc tcctctaacc ccaacaaaga 6420 gggattcatt taacctctca tcataaccca aagaattctt tttcaagcat tcgatgtttt 6480 ctaatcccaa gctctggttt tttgtgttgg acaaactatg gatcaatcgc tggtattctt 6540 gttcttcaat attaatctct tgcataaatt ttgatttctt taggatgtcg atcagcaacc 6600 accgaactct ttcaacaacc caatcagcaa ggaatctatt gctgtagcta gatctgccat 6660 caactacagg aaccaacgta atccctgccc ttagtaggtc ggactttagg tttaagagct 6720 ttgacatgtc actcttccat tttctctcaa actcatcagg attgacccta acaaaggttt 6780 ccaataggat gagtgttttc cctgtgagtt tgaaaccatc cggaatgact tttggaaggg 6840 tgggacatag tatgccatgg tcagacagga tcacatcaac aaacttctga tctgaattga 6900 tctgacaggc gtgtgcctca caggactcaa gctctactaa acttgacaga agtttgaacc 6960 cttccaacaa cagagagctg gggtgatgtt gagataaaaa gatgtccctt tggtatgcta 7020 gctcctgtct ttctggaaaa tgctttctaa taaggctttt tatttcattt actgattcct 7080 ccatgctcaa gtgccgccta ggatccactg tgcg 7114 //