ID AY358021; SV 2; linear; genomic RNA; STD; VRL; 7196 BP. XX AC AY358021; XX DT 28-AUG-2003 (Rel. 77, Created) DT 29-AUG-2003 (Rel. 77, Last updated, Version 2) XX DE Machupo virus strain Carvallo segment L, complete sequence. XX KW . XX OS Mammarenavirus machupoense OC Viruses; Riboviria; Orthornavirae; Negarnaviricota; Polyploviricotina; OC Ellioviricetes; Bunyavirales; Arenaviridae; Mammarenavirus. XX RN [1] RP 1-7196 RA Bowen M.D., Thurman K., Minor E., Meyer R.F., Malfatti S.A., Do L.H., RA Smith K.L., McCready P.M., Chain P.S.G.; RT ; RL Submitted (01-AUG-2003) to the INSDC. RL Viral Sequencing Group, Lawrence Livermore National Laboratory, 7000 East RL Avenue, Livermore, CA 94550, USA XX DR MD5; 8b58caeeca784aabe06e51c06b9b63c8. DR EuropePMC; PMC3210867; 21982818. XX CC On Aug 27, 2003 this sequence version replaced gi:33868606. XX FH Key Location/Qualifiers FH FT source 1..7196 FT /organism="Mammarenavirus machupoense" FT /segment="L" FT /strain="Carvallo" FT /mol_type="genomic RNA" FT /note="large segment" FT /db_xref="taxon:3052317" FT primer_bind 1..20 FT CDS 98..382 FT /codon_start=1 FT /product="Z protein" FT /note="zinc finger protein" FT /db_xref="GOA:Q6UY77" FT /db_xref="InterPro:IPR003224" FT /db_xref="InterPro:IPR024183" FT /db_xref="InterPro:IPR038485" FT /db_xref="UniProtKB/TrEMBL:Q6UY77" FT /protein_id="AAQ55247.1" FT /translation="MGNCNKPPKRPPNTQTSSNQPSAEFRRTAPPSLYGRYNCKCCWFA FT DTNLITCNDHYLCLRCHQTMLRNSELCHICWKPLPTSITVPVEPSAPPP" FT misc_feature 396..462 FT /note="hairpin intergenic region" FT CDS complement(465..7094) FT /codon_start=1 FT /product="L protein" FT /note="L polymerase" FT /db_xref="GOA:Q6UY76" FT /db_xref="InterPro:IPR007099" FT /db_xref="InterPro:IPR010453" FT /db_xref="InterPro:IPR026382" FT /db_xref="UniProtKB/TrEMBL:Q6UY76" FT /protein_id="AAQ55248.1" FT /translation="MDEYVQELKGLIRKHIPERCEFGHQKVTFLSQVHPSPLLTEGFKL FT LSSLVELESCEAHACQANTDQRFVDVILSDNGILCPTLPKVIPDGFKLTGKTLILLETF FT VRVNPDEFEKKWKADMSKLLNLKHDLQKSGVTLVPIVDGRSNYNNRFVADWVIERIRWL FT LIGILKASKSMLEIDIEDQEYQRLIHSLSNVKNQSLGLENLEHLKRNSLDYDERLNESL FT FIGLKGDIRESTVREELIKLKLWFKDEVFSKGLGKFKLTDRRELLESLSSLGAHLDSDV FT SSCPFCNNKLMEIVYNVTFSCVERTDGVATVDQQFSTTHSNIEKHYLSVLSLCNKIKGL FT KVFNTRRNTLLFLDLIMVNLMVDISDSCQDAIESLRKSGLIVGQMVMLVNDRVLDILEA FT VKLIRKKIGTNPNWVKNCSKILERSHPEIWHHLSTLIKQPDFNSLISIAQHLVSDRPIM FT RYSVERGSDKICRHKLFQEMSSFEQMRLFKTLSSISLSLINSMKTSFSSRLLVNEREFS FT KYFGNVRLRECYAQRFYLAESLVGFLFYQKTGERSRCYSVYLSDNGVMSEQGSFYCDPK FT RFFLPVFSDEVLAGMCEEMTSWLDFDTGLMNDTGPILRLLVLAILCSPSKRNQTFLQGL FT RYFLMAFANQIHHIDLTSKLVVECKSSSEVVVQRLAVGLFIRLLSGESDASLFFSRRFK FT YLLNVSYLCHLITKETPDRLTDQMKCFEKFIEPKVKFGCAVVNPSLNGKLTVDQEDIMI FT NGLKKFFSKSLRDTEDVQTPGVCKELLNYCVSLFNRGKLKVSGELKNNPFRPNITSTAL FT DLSSNKSVVIPKLDELGNILSTYDKEKLVSACVSSMAERFKTKGRYNLDPDSTDYLILK FT NLTGLVSAGPKAKSTQEELSLMYEALTEEQVESFNEIKHDVQVALAKMADNSVNTRTKN FT LGRADNSVKNGNNPLDNLWSPFGVMKEIRAEVSLHEVKDFDPDVLPPEVYKELCDAVYK FT SSEKCNFFLEGVLDVCPLGLLLKNLTTSSYVDEEYFMCFKYLLIQGHFDQKLGSYEHKS FT RSRLGFTDETLRLKDEVRLSIRESNSEAIADKLDKSYFTNAALRNLCFYSEDSPTEFTS FT ISSNSGNLKFGLSYKEQVGSNRELYVGDLNTKLMTRLVEDFSEAVGNSMKYTCLNSEKE FT FERAICDMKMAVNNGDLSCSYDHSKWGPTMSPALFLALLQMLELRTPVDRSKIDLDSVK FT SILKWHLHKVVEVPINVAEAYCIGKLKRSLGLMGCGSTSLSEEFFHQTMQLNGQIPSHI FT MSVLDMGQGILHNTSDLYGLITEQFLCYALDLLYDVIPVSYTSSDDQITLIKTPSLDIE FT GGSDAAEWLEMICFHEFLSSKLNKFVSPKSVIGTFVAEFKSRFFVMGEETPLLTKFVAA FT ALHNVKCKTPTQLSETIDTICDQCIANGVSTKIVTRISKRVNQLIRYSGYGETPFGAIE FT DQDVKDWVDGSRGYRLQRKIEAIFHDDKETSFIRNCARKVFNDIKRGRIFEENLINLIG FT RGGDEALTGFLQYAGCSEQEVNRVLNYRWVNLSSFGDLRLVLRTKLMTSRRVLEREEVP FT TLIKTLQSKLSRNFTKGVKKILAESINKSAFQSSVASGFIGFCKSMGSKCVRDGKGGFL FT YIKEVYSGVSACTCEICALKPKIIYCNNSLNKVSQFSKPILWDYFSLVLTNACELGEWV FT FSTVKEPQKPLVLNNQNFFWAVKPKVVRQIEDQLGMNHVLQSIRRNYPVLFDEHLTPFM FT NDLQVSRTMDSGRLKFLDVCIALDMMNENLGIISHLLKTRDNSVYIVKQSDCALAHIRQ FT SSYTDWELGLSPQQICTNFKTQLVLSSMVNPLVLSTSCLKSFFWFNEVLELEDDSQIEL FT AELTDFALMVKNQNVSRAMFVEDIAMGYVVSNFEGVRISLSNVMVDGVQLPPQEKAPDI FT GELFGLKAENVIVGLVVQIDHVRMSTKFKLKRKMVYSFSLECIMDVGEIQNKEVILKVV FT AVDQSVSGSGGNHMLLDGVSVVASLPLFTGQASFDLAAMLIESNLAGSNDNFLMRNVTL FT DLGGFSPELSDKYSYRLSGPENQEDPLVLKDGAFYVGGERLSTYKVEFTGDLVVKALGA FT LEDDESVVSMLHQLWPYLKATSQVILFQQEDFTIVHDLYKKQLTKSIESFGEWIEFTNF FT KVAYSKSLKELVISDTQGSFRLKGVMCRPLASTPQVEDIE" FT primer_bind complement(7178..7196) XX SQ Sequence 7196 BP; 2098 A; 1728 C; 1224 G; 2146 T; 0 other; gcgcacagtg gatcctaggc gtaactagat caagttttgc tgagtaaaat tttaaacaca 60 ttgagtatcc gtgcaagaca gcgcagagct ccccacaatg ggcaactgca ataagcctcc 120 caagaggcct cccaacacac aaacatcatc caaccaaccc tcagcagagt tcaggagaac 180 agccccaccc agtctctatg gtcgctacaa ctgcaaatgc tgttggtttg ccgacacaaa 240 cttgattaca tgtaacgacc actacttgtg cctgagatgt catcaaacaa tgctcaggaa 300 ttctgaactc tgtcacatat gctggaaacc actaccgaca tccatcacag ttcccgtgga 360 gccaagtgcc cccccaccat gaacatcccc aaactcggtc cacaagaccc ccggggggcc 420 ccaacggggc ccccacgggg gatccccggg ggtcttgggc tgcgtcactc aatgtcctcc 480 acttggggcg tgcttgccag gggtctacac atcacaccct tcagtctgaa tgacccctgg 540 gtgtctgata tcacaagctc tttgagtgat ttactatagg caaccttaaa gttggtaaat 600 tcgatccatt cgccaaagct ttcaattgat tttgtgagct gtttcttgta caaatcatga 660 acaatggtga aatcttcctg ttgaaacaaa ataacctgtg atgttgcttt caaataaggc 720 cacagttggt gcagcataga aacaacactc tcatcatctt ctagggcccc caatgctttc 780 accacaagat cacctgtaaa ctctacttta tatgtggaca gtctctcacc tcccacatag 840 aaggcaccat ccttcaagac caacgggtct tcttggtttt caggtcccga gagcctgtag 900 gaatatttgt cactcaactc tggggaaaat ccacctaaat ccaaggtaac atttctcatt 960 aagaaattat catttgagcc agccagattt gactcgatta acattgcagc caaatcaaaa 1020 ctggcctgcc cagtaaataa tgggaggctt gcaacaaccg acacaccatc cagcagcata 1080 tggtttcctc ctgacccaga cacagactga tcgactgcca ccaccttcaa aataacctct 1140 ttgttctgga tctctcctac atccattatg cattccaaag agaaactata caccattttt 1200 ctcttcaact tgaacttcgt tgacattctt acatgatcga tctgcaccac taggcccaca 1260 atgacattct cagccttcaa tccaaacaat tcacctatat caggagcctt ctcctgaggc 1320 ggcaattgaa caccatcaac catcacgttg cttaacgaga ttctaacacc ctcgaagtta 1380 gagacaacat accccattgc gatatcctcc acaaacatag ctctggaaac attttgattc 1440 ttaaccatta aggcaaagtc agtcaattct gctaactcaa tttgactatc atcctctagc 1500 tctaggactt cattgaacca gaaaaatgac ttcagacaag atgttgaaag gactaatggg 1560 tttaccattg aagataggac cagctgggtc ttgaagtttg tgcaaatctg ctgcggacta 1620 agtcctaatt cccaatctgt gtagcttgac tgccttatgt gtgctaaggc acaatcactt 1680 tgtttaacta tgtaaacact gttgtctctg gtcttcaaca ggtgactgat gataccaagg 1740 ttttcattca tcatgtctaa agcaatgcag acatccagaa attttagcct cccgctatcc 1800 attgttctgc tgacctgaag atcattcata aatggagtca agtgttcgtc aaaaagaact 1860 ggataatttc tccttataga ttgcagaaca tggttcattc ccagttggtc ttcaatttgt 1920 ctcaccactt taggcttcac agcccaaaaa aagttttggt tgttcaacac caatggcttt 1980 tggggctctt taactgtgga aaacacccac tctccaagtt cacatgcatt tgttaggact 2040 aatgaaaaat aatcccacaa aataggtttt gaaaactgac tcactttgtt aagtgagttg 2100 ttgcaatata tgatcttggg ctttaacgca catatttcac atgtacaagc acttacacct 2160 gaatacactt cttttatgta taagaatccc cctttcccat ctctaacgca cttgctaccc 2220 atgcttttgc agaacccaat aaaacctgag gcaacggatg actggaaagc tgacttatta 2280 attgactcag caaggatctt cttaactcct tttgtgaagt ttctggaaag tttggattgc 2340 aaggttttaa ttaaagttgg cacttcctcc ctttcaagaa ctcttctact tgtcatcaac 2400 tttgtcctca aaactaacct aagatctcca aaacttgata aattcaccca tctatagttc 2460 aacacgcgat taacttcttg ttcactgcaa cctgcatact gtaaaaaacc agtcaaggcc 2520 tcatcaccac ctctaccaat caaattgatc agattctcct caaatattct gccacgcttt 2580 atatcattaa aaacctttct ggcacagttc ctaataaaag aggtttcctt gtcatcatga 2640 aagatagctt caatctttct ctgtagacgg taaccccttg agccatccac ccagtctttc 2700 acatcttgat cttcaatagc cccaaagggg gtctctccat atccggagta tctaattaat 2760 tggttaactc gcttagatat tcttgtcact attttggtgc tgactccatt tgcaatgcat 2820 tgatcacaga tggtatctat agtttctgac aattgtgtgg gtgttttaca ctttacattg 2880 tgtaaagctg cagcaacaaa ctttgtgagc aatggtgttt cttcacccat gacaaaaaat 2940 cttgatttga actctgcgac aaaagtcccg atgacactct tggggctgac aaacttattc 3000 aatttagatg acagaaactc atggaagcag atcatctcga gccactccgc agcatctgaa 3060 cccccttcta tatccagaga aggtgtcttg ataagagtga tctgatcgtc actagaggta 3120 tatgacacag ggattacatc atacaaaaga tcgagtgcat aacacaaaaa ttgctctgtg 3180 attaatccat acaaatcaga agtgttatgt agtatccctt gccccatgtc caaaacagac 3240 ataatgtgac taggaatctg accatttaac tgcatggtct gatggaagaa ttcttcactc 3300 aaactggtgg aaccgcagcc catcaatcca agggaccttt ttagctttcc aatacagtag 3360 gcttcagcca cattgatagg cacttctaca actttgtgaa ggtgccattt cagtatactt 3420 ttaacagaat caagatcaat ttttgacctg tcaacagggg ttctcaattc cagcatttgt 3480 aataatgcca ggaaaagtgc aggactcatt gttggacccc attttgagtg atcataagaa 3540 catgacaaat caccattatt cactgccatc ttcatgtcac aaatggcccg ttcaaattct 3600 ttttcagagt tcagacaggt gtacttcata gaattcccta cagcttcaga aaaatcctcc 3660 accaatcttg tcatcagttt tgtgttgagg tctcctacat agagctctct gtttgaaccc 3720 acctgttcct tataacttag accaaattta aggtttcctg agttggaact aatgcttgtg 3780 aactcagtgg gcgaatcttc agaataaaaa cacagattcc ttaatgcggc attggtgaag 3840 taacttttat ccaacttgtc tgcaatcgcc tctgagttgc tttctcttat actaagtcta 3900 acctcgtctt tgagtcttaa tgtctcatcg gtgaaaccca gtctagatct gcttttgtgc 3960 tcataacttc ctagtttttg atcaaagtga ccttgtatca agaggtattt aaaacacata 4020 aaatactctt cgtccacata acttgatgtg gtcagatttt tcagcagcaa ccccaaggga 4080 cagacatcaa gtactccctc aaggaagaag ttgcattttt ctgacgattt gtaaactgcg 4140 tcacacaact ccttgtacac ttcaggagga agaacatctg ggtcaaaatc cttgacttcg 4200 tgtaacgata cttcagctct aatctctttc atcaccccaa aaggtgacca caaattgtcc 4260 aaaggattat tcccattttt tactgaatta tcagctcggc cgagattttt agttcttgtg 4320 ttcacactgt tgtcagccat cttggctaag gcaacttgta catcatgttt aatttcgttg 4380 aatgattcaa cctgttcttc tgttaacgcc tcgtacatta aagacaattc ttcttgagta 4440 ctcttagctt tcggccctgc actcaccaaa cctgtcagat tttttagaat caaatagtca 4500 gttgaatctg gatctagatt gtaccttcct ttggttttaa acctctctgc catagaggaa 4560 acacatgctg acactagttt ttccttgtca taggtggaga ggatgttgcc taactcatct 4620 agttttggta taacaacact cttgttactt gataagtcca aagcagtact tgttatatta 4680 ggtctaaagg gattattttt aagctcccca gaaaccttta actttcccct attaaacaaa 4740 gacacacaat aatttaagag ttctttacac acacctggtg tctgcacatc ctcagtgtcc 4800 cttaaggatt ttgaaaaaaa cttctttaaa ccatttatca taatgtcttc ctgatctaca 4860 gtcagctttc catttagaga tgggttcacc acagcacatc caaacttaac tttgggctca 4920 atgaacttct caaaacattt catctgatct gttaatcggt caggcgtttc ttttgtgatt 4980 aaatggcaaa ggtaactaac atttagcaga tatttgaatc ttcttgagaa aaataaactt 5040 gcatctgact caccactaag tagtctaatg aagagtccca ctgcaagcct ttgaaccacc 5100 acttctgaac ttgacttgca ttccactacc aatttagatg tcaggtcgat atgatgaatt 5160 tggttagcaa aagccattaa aaagtatctt aatccttgta gaaaggtttg attcctcttt 5220 gatggggagc agagtatagc cagaactaac aaccttaata tgggcccagt gtcattcatt 5280 aatccggtgt caaaatccag ccagcttgtc atttcctcac acattccagc caaaacttca 5340 tcagaaaaaa caggcaagaa gaatctcttt ggatcacaat aaaatgaacc ctgttctgac 5400 atcacaccgt tatcagataa ataaactgaa taacacctgg acctttcacc tgtcttctga 5460 tagaaaagaa agccaactaa actctcagcc aaataaaacc tttgggcata acactctctg 5520 agtctaacat taccaaagta cttagaaaat tctctctcat tcacaagcaa tcttgaagaa 5580 aaggatgtct tcatagaatt gattagtgac aaggatattg aggacaaagt cttgaataac 5640 ctcatttgct caaagctaga catctcctgg aacaatttat gtctacaaat cttatcagag 5700 cctctttcca ctgaatacct cataattggt ctatctgaga caagatgttg ggctattgaa 5760 atcaagctat tgaagtctgg ttgctttatc aaagtgctta agtgatgcca tatttctgga 5820 tgtgatctct ctagaatttt tgaacaattc ttgacccaat tgggattagt cccaatcttt 5880 tttctgatga gtttaacagc ctccaaaatg tccagcactc tatcattcac taacataacc 5940 atctgaccca ctatcaatcc cgattttctc aaactttcaa tcgcgtcctg gcaactgtca 6000 ctaatgtcaa ccatcaaatt aaccattatg agatctaaga atagtagggt gtttcttctg 6060 gtgttaaaga ccttcaaccc ctttatttta ttgcacaaag ataagacact aaggtaatgt 6120 ttttctatgt tagagtgtgt ggtgctaaac tgctggtcca ctgtggctac accatcggtc 6180 ctttcaacac agctaaaggt cacattgtaa acaatttcca tcaacttatt gttacaaaag 6240 ggacagcttg acacatcact atctagatga gcacctaagc tcgataggga ctctaataat 6300 tcccttctgt cagtcaattt gaatttgccc agacctttgc tgaagacctc atccttgaac 6360 cacaatttaa gtttgatgag ttcttccctc actgtcgact ctctaatgtc tcctttcaaa 6420 ccaataaaca atgactcatt caacctctca tcataatcta aagaattcct tttcaaatgt 6480 tctaggtttt ccaaccccaa gctttgattc ttaacgtttg atagactatg aattaatcgt 6540 tgatattcct ggtcctcaat atcaatctca agcatggatt tggatgcttt caaaatcccg 6600 ataagcaacc atcttattct ttcaatcacc caatcagcaa caaatctatt gttgtaattg 6660 ctcctgccat caacaatagg aaccaaagtc acgcccgact tttgcaggtc atgcttcagg 6720 tttaaaagct ttgacatgtc agctttccat ttcttctcga actcatctgg gtttactctt 6780 acaaaggtct ccagcagaat tagggttttc ccagttaatt tgaacccatc ggggatcacc 6840 tttggtaaag ttggacataa aatcccattg tcagatagta ttacatctac gaatctttga 6900 tcagtgtttg cctggcaggc gtgtgcttca caggactcaa gttcaacaag actagagagc 6960 aacttgaagc cttctgtgag caagggactg ggatgcacct gagataggaa tgtgaccttt 7020 tgatgtccaa actcgcacct ctcaggaatg tgctttctaa taagcccttt caactcttgg 7080 acatattcat ccatggccaa gtgtcgccta ggatccactg tgcgcactgg ccgtcgtttt 7140 acacgccttc accacagcac atccaaactt aacgacggcc taggatccac tgtgcg 7196 //