Dbfetch
ID AY339618; SV 1; circular; genomic DNA; STD; VRL; 2606 BP. XX AC AY339618; XX DT 13-AUG-2003 (Rel. 76, Created) DT 13-AUG-2003 (Rel. 76, Last updated, Version 1) XX DE Tomato chino La Paz geminivirus segment A, complete sequence. XX KW . XX OS Tomato chino La Paz virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2606 RA Holguin-Pena R.J., Vazquez-Juarez R., Rivera-Bustamante R.F.; RT "Geminivirus infecting tomato crops in Baja California Sur, Mexico"; RL Unpublished. XX RN [2] RP 1-2606 RA Holguin-Pena R.J., Vazquez-Juarez R., Rivera-Bustamante R.F.; RT ; RL Submitted (10-JUL-2003) to the INSDC. RL Biologia Molecular de Plantas, Centro De Investigaciones Biologicas del RL Noroeste, Mar Bermejo No. 195 Col. Playa Santa Rita, La Paz, Baja RL California Sur 23090, Mexico XX DR MD5; 3842c5ed36f4a4ac118bb658c91f9984. XX FH Key Location/Qualifiers FH FT source 1..2606 FT /organism="Tomato chino La Paz virus" FT /segment="A" FT /isolate="cherryUABCS" FT /mol_type="genomic DNA" FT /country="Mexico:Baja California Sur, La Paz" FT /clone="PU1" FT /note="collected in March 2002" FT /db_xref="taxon:240492" FT gene 184..939 FT /gene="AR1" FT /note="synonym: AV1" FT CDS 184..939 FT /codon_start=1 FT /gene="AR1" FT /product="coat protein" FT /note="CP" FT /db_xref="GOA:Q7T5V1" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:Q7T5V1" FT /protein_id="AAQ21051.1" FT /translation="MPKRDAPWRLMSGTPKVSRSSNYVPPDGLGRKFDKSSAWANRPMY FT RKPRIYRTVRSADVPRGCEGPCKIQSFEQRHDISHTGKVMCISDVTRGNGITHRVGKRF FT CVKSVYILGKIWMDDNIKLKNHTNSVMFWLVRDRRPSGTAMDFGHLFNMFDNEPSTATV FT KNDLRDRFQVLHRFHAKVTGGQYASNEQTLVKRFRRVNQRVTYNNQEAARYENHTENAL FT MLYMACTHASNPVYATLKIRIYFYDSVLN" FT gene complement(936..1334) FT /gene="AL3" FT CDS complement(936..1334) FT /codon_start=1 FT /gene="AL3" FT /product="replication enhancer protein" FT /note="Ren" FT /db_xref="GOA:Q7T5U8" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:Q7T5U8" FT /protein_id="AAQ21054.1" FT /translation="MDSRTGESITVEQAENSVFIWEVPNPLYFTIIKTEDPIYTNSRIY FT HIQIRFNHNLRKALSLHKAYLNYQIWTTSVRASGTTYLSRFKYLVLLYLDRLGVICINN FT VIRAVRFATDRWYVNHVLENYSIKFKIY" FT gene complement(1081..1467) FT /gene="AL2" FT /note="synonym: AC2" FT CDS complement(1081..1467) FT /codon_start=1 FT /gene="AL2" FT /product="transcription activator protein" FT /note="TrAP protein" FT /db_xref="GOA:Q7T5U9" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:Q7T5U9" FT /protein_id="AAQ21053.1" FT /translation="MQNSSSSTPPSIKPKHKIAKSRIRRKRIDLNCGCSFYQHIDCANN FT GFTHRGEHHCGTGREFRFYLGGTKSPLFHDNQNRGPNLHQQQDLPHPNKVQPQPQEGVE FT STQSVPQLPNLDDISSSFWDDLLK" FT gene complement(1424..2464) FT /gene="AL1" FT /note="synonym: AC1" FT CDS complement(1424..2464) FT /codon_start=1 FT /gene="AL1" FT /product="replication protein" FT /note="Rep" FT /db_xref="GOA:Q7T5V0" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:Q7T5V0" FT /protein_id="AAQ21052.1" FT /translation="MPPPKRFRLQAKNIFLTYPQCPLTKEEALDQLLSIQLPSNKKYIK FT ICRELHENGEHHLHVLMQFEGKIQITNQRQFDLVSPTRSAHFHPNIQGAKSSSDVKSYI FT DKDGDTLEWGEFQIDGRSARGGQQTANDAAAEALNASSKEEAMRIIKEKLPKEFLFQYH FT NLSSNLDRIFAKAPEPWVPPFPLSSFTNVPDEMQEWADDYFGRGAAARPERPISIIIEG FT DSRTGKTMWARALGPHNYLSGHLDFNPRVYSNDVEYNVIDDVTPQYLKMKHWKELIGAQ FT KDWQSNCKYGKPVQIKGGIPSIVLCNPGEGASYKCSLEKEENAALKAWTLHNAKFIFLN FT STLYQA" FT gene complement(2050..2307) FT /gene="AL4" FT /note="synonym: AC4" FT CDS complement(2050..2307) FT /codon_start=1 FT /gene="AL4" FT /product="AL4 protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:Q7T5U7" FT /protein_id="AAQ21055.1" FT /translation="MGNIISTCLCSSKGKSKSRIKDSSTWYPQPGQHISIRTFRELNQA FT PTSSPTSTRMEIHWNGENSRSTEDLLEEVSKQLTTLPQRP" XX SQ Sequence 2606 BP; 642 A; 535 C; 616 G; 813 T; 0 other; accggatggc cgcgcctttt ttgacccggc ccatcttcgg aaatttcgta gaaatttcat 60 agataaaatt agccaatcag tgcacgcgtg tgcggtctaa ttattaataa cttggcgact 120 aagtcgtttt ctggtctata aatttgtcgt tatgtgtgtg gtccagatat acatattttg 180 aaaatgccta agcgggatgc cccatggcgt ttaatgtcgg gtactcctaa ggttagtcgc 240 tcctctaatt atgtccctcc tgatggattg ggccgtaaat ttgataaatc atctgcttgg 300 gccaacaggc ccatgtacag aaagcccagg atatatcgga ccgtaaggtc tgccgatgtt 360 cctcgaggct gtgaagggcc ttgcaagatt cagtcgtttg agcagcgtca cgatatatct 420 catactggaa aggtgatgtg tatctccgat gttactcgcg gtaatggcat tacccatcgg 480 gttggtaaac gtttctgcgt gaagtccgtg tatatattag ggaagatctg gatggacgat 540 aacatcaagc tcaagaacca cactaacagc gttatgttct ggttagttag ggataggagg 600 cccagcggaa cggctatgga ttttggtcac ctcttcaaca tgtttgacaa tgagcctagt 660 actgccactg tgaagaacga tcttagagat cgtttccaag tgctgcacag gtttcatgcg 720 aaggtgactg gtggtcagta tgcaagcaat gagcagacgt tggtgaagcg ttttcggcgg 780 gtgaatcagc gtgtaacata taataatcag gaggcagctc ggtatgaaaa ccatacggag 840 aacgccttaa tgttgtacat ggcatgtact catgcctcta accctgtgta tgctactctt 900 aagatccgga tctattttta tgattcggtg ttaaattaat aaattttgaa ttttattgaa 960 taattctcaa gtacatgatt tacataccat ctgtctgttg cgaagcgaac agctctaatt 1020 acattattaa tgcaaataac gcctaatcta tctaaataca ataagactaa atatttaaat 1080 ctacttaagt aagtcgtccc agaagctcga actgatgtcg tccagatttg gtagttgagg 1140 tacgctttgt gtagactcaa cgccttcctg aggttgtggt tgaaccttat ttggatgtgg 1200 taaatcctgc tgttggtgta aattgggtcc tctgttttga ttatcgtgaa atagagggga 1260 tttggtacct cccagataaa aacggaattc tctgcctgtt ccacagtgat gctctccccg 1320 gtgcgtgaat ccattgttgg cgcagtcgat gtgttggtag aatgagcagc cacagtttag 1380 gtctattctc ttgcgacgaa tcctggactt tgcaatcttg tgcttaggct tgatagaggg 1440 tggagttgag gaagatgaat tttgcattgt ggagggtcca agcttttagt gctgcatttt 1500 cctctttttc aagggaacat ttatagctgg ctccctctcc tggattgcag agcacgattg 1560 atggtatccc acctttaatt tgaactggct tcccgtattt gcagttggac tgccagtcct 1620 tttgggcccc aatcagctct ttccaatgtt tcatctttaa atattgcgga gtgacgtcat 1680 caatgacgtt gtactccaca tcatttgagt aaaccctagg attgaaatcc aagtgtccac 1740 tcaaataatt atgtggtcct aaagcacgag cccacatcgt ctttcctgtc ctcgaatcac 1800 cctcgatgat tatactaata ggtctctccg gccgcgcagc ggcaccccta ccaaaataat 1860 catcagccca ctcttgcatc tcgtccggaa cgttcgtgaa ggaggagagt ggaaacggag 1920 gaacccatgg ttccggagcc ttagcgaata tcctgtctaa gttactagac aggttgtgat 1980 attgaaaaag aaactctttg gggagcttct ctttaataat tcgcatggct tcttctttcg 2040 aggacgcatt tagggcctct gcggcagcgt cgttagctgt ttgctgacct cctctagcag 2100 atcttccgtc gatctggaat tctccccatt ccaatgtatc tccatccttg tcgatgtagg 2160 acttgacgtc ggagcttgat ttagctccct gaatgttcgg atggaaatgt gctgacctgg 2220 ttggggatac caggtcgaac tgtctttgat tcgtgatttg gattttccct tcgaactgca 2280 taagcacgtg gagatgatgt tccccatttt cgtgcagttc tctgcagatc ttgatgtatt 2340 ttttgttaga aggaagttgt atggacagta gttgatctag ggcttcttct tttgtaagag 2400 gacattgggg gtatgttagg aagatatttt ttgcttgaag gcgaaaacgt ttaggtggtg 2460 gcatttttgt aattaataga tgtactccga ttgcctcttc ttacaaaagt ctatatgaat 2520 tggagtattg gagtacaata tatactagaa ggtcctatag aactttcaat cgtatccgct 2580 cacgtggcgg ccatccgttt aatatt 2606 //