ID AY337486; SV 1; linear; genomic RNA; STD; VRL; 8587 BP. XX AC AY337486; XX DT 29-JUL-2003 (Rel. 76, Created) DT 17-FEB-2004 (Rel. 78, Last updated, Version 3) XX DE Heterosigma akashiwo RNA virus SOG263, complete genome. XX KW . XX OS Heterosigma akashiwo RNA virus SOG263 OC Viruses; Riboviria; Picornavirales; Marnaviridae; Marnavirus. XX RN [1] RP 1-8587 RX DOI; 10.1016/j.virol.2003.10.015. RX PUBMED; 15016544. RA Lang A.S., Culley A.I., Suttle C.A.; RT "Genome sequence and characterization of a virus (HaRNAV) related to RT picorna-like viruses that infects the marine toxic bloom-forming alga RT Heterosigma akashiwo"; RL Virology 320(2):206-217(2004). XX RN [2] RP 1-8587 RA Lang A.S., Culley A.I., Suttle C.A.; RT ; RL Submitted (07-JUL-2003) to the INSDC. RL Department of Earth and Ocean Sciences, University of British Columbia, RL 6270 University Blvd., Vancouver, BC V6T 1Z4, Canada XX DR MD5; e5e49b6932cb17ba0e7bdbbf88e60ccf. DR EuropePMC; PMC3094400; 21603639. XX FH Key Location/Qualifiers FH FT source 1..8587 FT /organism="Heterosigma akashiwo RNA virus SOG263" FT /strain="HaRNAV-SOG263" FT /mol_type="genomic RNA" FT /db_xref="taxon:239720" FT 5'UTR 1..483 FT CDS 484..8229 FT /codon_start=1 FT /product="polyprotein" FT /note="contains putative helicase and RNA-dependent RNA FT polymerase domains, and capsid structural mature peptides" FT /db_xref="GOA:Q7T7T5" FT /db_xref="InterPro:IPR000605" FT /db_xref="InterPro:IPR001205" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR014759" FT /db_xref="InterPro:IPR014872" FT /db_xref="InterPro:IPR024343" FT /db_xref="InterPro:IPR027417" FT /db_xref="InterPro:IPR029053" FT /db_xref="InterPro:IPR033703" FT /db_xref="UniProtKB/TrEMBL:Q7T7T5" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="AAP97137.1" FT /translation="MDSTRKVGELKTPSGGGLHPQGCVTTPARGEDFIACVKQAEKHAK FT EFFELKLEELVPNSKQVRRKHQWPAARLKVGKLGKRDRRKGETLKSTSEIDDSGGPSKD FT DETKTDGNTDDDLPGLVDVSKPSGPDEGSFLSGIKKGFLNSATAPAVVSAPENPSPAEK FT LASAVKDSSVSARRERRDRWDAELVQKMERAREKISGSRFHPIDGDLDSREMEHAREKV FT SGSRFHPVDGDLESREMEHAREKTRGTRFHPVSGDLDPREARDPSGEDGTDNFASLLSF FT MRGCFTDAAWSLKKVDMKSVVSMLCKVLIFLRASKKFSEEHRTLASYCELLTGMFSDEL FT FRLFGNLVPDILSDGGEEIVSSSFVTDLLETGSHLLQNPHVKRLLRVLGIVVGAAVARA FT AKLKVDSTRLSDLWDSFIGGSKGMDAVTMLLDFTQWLFALFFGEGSRWQTLFCGYDTRM FT MRNMSRAAELLSSSGHPRLNADGVRSLNKVRSEIDSLATYFIGELNAGRNKAFAGMYHK FT NLVEYSEKLRVLITSTKPKEQPYCLFFSGPAGQGKSALCNLLIRAIEGHSNFLGTRGLS FT PEEIEDILAQETFVHNCSATKWLSGYQSQKVMMFEDMCNSKNTGQGDSSPLNFLIGAVN FT NNTAFTDQADVDSKGCVPYAAEMVLVSSNTRDLMVNQLTNSPFSVARRLHLRIVPTLIG FT EPNGAVDPANWRIEVFKPVRNPLGEGVTRPTDGFTWELVGVFDFAGFMRFILKDYDAHV FT EQQRRFMESVSQNSKYCPRGQLASVCPNVCRCEDSAALASTSLTLGQIASKVRDPCSAV FT LNRTHMVWTKVRDPCSAALSNLLMGCMAFHPWCVYMFQYLFFFFAVIGISGTAWFYYGC FT TESLVSRVKKRWLLARHYLEFVTYCTHRRLYHRIVPNPGKVVRKGCLAVGLIGMVLVAW FT RTLRGAKKSTAYWSKTNPGSVHHGASVHGADTTNTLSKIDQNRRKAEIRSEDRTERFEG FT LMIQSFAMLVPKHAVSVGQCLNVIREQQGVDVEAQVILDDVSLRPLDGDLVLIISRNLG FT TAKSLVNYFPENFVVGDRLAFLFAGGVRREIRLVKSQRVVTDKANFIGTMYRTLDGSSV FT DVGTSGSVVLDYERNAPMGISLASNQGTVGFFQVVTKNLMSQCTQMLRDTLRSDYDVCT FT ELPTSVENVVISTKGIHPKSHPRYMEKCCHVPIANCERRTKAKSNIRLSEVAHMFVDNP FT TLTTFGPAALAGNWTDYTKTRNKMEEGVSTFPLGLLLEASKIRSAEIREQCKVIYPPLT FT LNQIVCGIDGEGHIDHMEQNTSAGCPHFGPKSQFMRFETDSNGEQVFIGLTDVQQQSFD FT EMIACLERGLPVPCLFVATKKDEALRIGKVPRTFYAASMNVIMAVRKYFCPVLQALKAN FT PIHAEIAIGTNAFGKDWADIYSHLASHSTETVIAGDYSSFDMSHNADAVRCAMQVLLDL FT IDESSLYSDVDKLAARTLVESLGQSFLAFDGTWMQVIGWVMSGVPLTAELSSTLNQIYM FT RVVWKVVTQRPISDFRSHVALIVYGDDNNAAVRDEPRYNFQSVAVTMGKFRMTYTNTDK FT NDEMHIYQRLEDAEFLKRLWVPGPLKVYAPLSWDSINKRIVWTRSRAPDRVRSLVYSVA FT ADCLEHQFEGLEYWEKFCHTLCQEEEVDGQVPYKHLVEGDPIDQLFSKIGPSQLSADPF FT WETSLDDDAWTVFARGKLSTCISTSKVARPEVARGRCESPRKFQDGGVVQLRLSGIYQR FT TRSGDRLSTCTPHLDEKLLTETLCNTLKFYDTSGLRENSHQTMSNGTERRPGEVDGDLA FT SILSRPTRVFTDTWKPGTNFYQASNIWKSFLNDDTIVDKISHFARLRGKMVVRLLINGN FT SMYYGKLVMHYSPFAQVDDVYTVSSVPDPAEWIQIMQKPHVSFDATTTTGATMELPMLL FT PNDWIDLTDEDMIARLGTLYIHDLNTLEHANAGTDELTVTLVAWMEDVELYLPTSTSEI FT VEYCKGEHKGGDEYETAKTSPLSISGTLTTVANVAAAASSLPHIGAFSKATEIVARAGA FT SAAKLFGYSRPPLLGAPEPFVPRYLSSLANCDVPETVQKFSMTGRQEVCVDSSPLGIDT FT GDELQLAKLVGKEGYLTTFTWDPSILVDGKLMDFGVNPMYHCPSTTNTGAYALTPLAYF FT SQPFRYWRGSIKYRFEVVASAFHRGRLRVVWDPVLYSLDAPFNQNFSVVLDIAEQRDFT FT VVVPYGAAQPYLENTRVPEDGVIYGSLYSSVDEAQDNGNLAIMVLNELSTIKNSAENVV FT YVNVYVSAGDDFRVAMPCAEKIMENRFVSTSEIISESGADPTLVLSDAPMTEGNVDSRV FT DEVVFGETVVSFRTLLKRYNLSYGFSPTIDAGANSLNRYTISSFPPYRGAVDGARDTYN FT YACHTLLNHLAPCFLGYRGGIRHKFVHMSPIRSGLLAASLGNSGPSGITYNHDVYDMGN FT GVTFVYNASEGVQDNPWRGLSGTALTPSTNQPVLEVEVPHYTSRKYVHTRSFGTETLVA FT ETAKNVSSRAPSINISMFAPSVTGHFPVLDFVSIGEDFNLLYFICTPLIYRGASPAPT" FT 3'UTR 8230..8587 XX SQ Sequence 8587 BP; 2204 A; 1821 C; 2204 G; 2358 T; 0 other; tgatagaaag ttctgcagta ttctgcagaa ctttttaata ccctttgtag agggatatct 60 actttaattg ctggtgtgcg ccagctcgct tttcgatgtg attcataatt aactatacac 120 ttgagcttaa aaccaattgt tatgcgtagg tagcgttctt tagcgtctac tgtagtgtaa 180 ttaatttgtt tgctctagtg gtgtctttgc cttcaaagta ctacagagta agttcatttg 240 catagttgtg ttgtgatcat gttgactagc ttgtttgcgt gctccattaa taacatcagt 300 cccagctggc ggggcaataa gtaccagcct ggttgttgca agccgtgccg aaagaagcgg 360 tatcacgacc cgtgtccctc catgtagtcg ttaaaaacaa gtgaggtaag gagttgtcca 420 tcttcgagaa aaattaataa aatggacttt tgggtctttg gccccccccc gcgttaggca 480 cctatggatt ctacacgcaa agttggagaa ctcaaaactc cctctggtgg aggtttacac 540 ccgcagggct gcgttacgac cccagcgaga ggtgaagatt ttattgcttg cgtcaagcag 600 gcagaaaaac atgcaaaaga gttctttgaa ctcaaattag aggaacttgt tcccaattca 660 aaacaggtcc gccgcaaaca tcaatggcct gctgctcgtc tcaaagttgg aaaattggga 720 aagcgcgacc ggagaaaagg cgagacactt aagtccactt ctgagattga cgatagtggt 780 ggcccatcta aggatgatga aacaaaaact gatggtaata cagatgatga tcttcctggg 840 cttgttgatg tttcaaaacc tagtggccct gatgaaggtt catttctttc tggtattaaa 900 aagggtttcc tgaattcagc taccgctccc gcagttgttt ccgccccaga aaaccctagc 960 ccagcagaga aacttgctag tgctgtcaaa gacagctccg ttagtgcaag aagagagcgt 1020 cgcgatcgtt gggatgcaga attggtccag aagatggaac gtgcccgtga gaaaataagt 1080 ggtagtcgat tccacccaat tgatggtgat ttagattcac gcgagatgga acatgcccgc 1140 gagaaagtga gtggtagtcg attccaccca gttgatggcg atttagaatc gcgcgagatg 1200 gaacatgccc gcgagaaaac tcgcggcacc cgattccatc cagttagtgg tgatttagac 1260 ccgcgtgaag ctcgtgatcc atctggcgaa gatggaactg acaattttgc ctcattattg 1320 tcctttatgc gtggatgttt cacagatgca gcgtggtccc tcaagaaggt agacatgaag 1380 agcgttgtct ctatgttgtg caaggttctg atatttctgc gcgctagcaa aaaattctca 1440 gaagaacacc gaacgcttgc aagttactgc gagctgctaa ctggaatgtt ttccgatgaa 1500 cttttccgac tctttggaaa cttagtaccc gatatattga gtgacggtgg cgaggagatt 1560 gtgtcatcaa gttttgttac ggatttgttg gagactggtt cacacctgtt gcaaaatccc 1620 catgtgaaaa gactcttgcg cgtcttaggt atcgtagttg gcgctgcggt tgcgcgcgct 1680 gcgaaactga aagtcgattc tactcggctg tctgatttgt gggactcttt tatcggtggc 1740 tctaaaggca tggatgcagt gaccatgttg ttagacttca ctcaatggtt gttcgcacta 1800 ttttttggtg agggctctcg ctggcaaaca ttgttttgtg gttacgatac acgtatgatg 1860 cggaatatgt cgcgtgccgc agagcttttg tcatcgagtg ggcatccacg attgaacgca 1920 gatggggtac gctcactcaa caaggtaaga tctgaaatcg attcattggc cacttatttt 1980 attggcgaac tgaatgcggg aagaaataaa gcatttgcag ggatgtacca taagaattta 2040 gtggagtaca gtgaaaagtt acgggtgcta attacttcta ctaaacctaa agagcagcct 2100 tattgtttgt tcttctcggg ccccgcaggg caagggaaat ccgcgttatg caaccttctt 2160 atcagggcta ttgaagggca cagcaatttc ctcgggacgc gaggcctctc gcccgaagaa 2220 attgaagata ttttggcgca agagacgttt gtgcacaatt gtagcgcgac caagtggcta 2280 tcgggctatc aaagccaaaa agtgatgatg tttgaagaca tgtgtaatag taaaaacact 2340 gggcaaggcg actccagtcc attgaatttc ttgattggcg ctgtcaataa taacaccgct 2400 ttcactgatc aagctgatgt ggattcgaaa ggatgtgtcc cgtatgccgc agaaatggtt 2460 ttggtttcat ccaacacacg cgaccttatg gtcaatcaat tgactaactc ccctttctca 2520 gtcgcgcggc gcttgcacct cagaattgta cccaccctga taggtgagcc caacggagcg 2580 gtggatcccg caaactggcg gattgaggtg tttaaaccag tgcgcaaccc attaggtgaa 2640 ggagttaccc ggccgacgga tggtttcaca tgggaattag tgggggtgtt tgatttcgct 2700 gggttcatga gattcattct aaaggattac gacgcccatg tagagcagca gcggcgtttt 2760 atggaaagtg tttctcagaa ttccaagtac tgtccgcgtg ggcaactggc cagtgtgtgc 2820 ccaaatgtgt gccgttgtga agattcagca gcattggcaa gtacttccct gacgcttggc 2880 caaatagcga gcaaagtgcg tgatccatgc tctgctgttt taaaccgcac acatatggtt 2940 tggactaagg tacgtgatcc atgttctgcc gctttgagta acttgcttat gggttgcatg 3000 gcctttcacc cttggtgcgt ttatatgttc caatatctct ttttcttctt cgcagtgatt 3060 ggtatcagtg gtactgcgtg gttttactac ggttgcacag aatcgctagt gagccgagta 3120 aagaagcgat ggctcttggc tagacattac ctagaatttg taacttactg tacgcataga 3180 cggttatacc atcgcattgt accaaaccca ggcaaagtgg tgaggaaggg ttgtttagct 3240 gttggtttga ttggtatggt gttagtggcc tggcgtacac taaggggtgc caagaagagt 3300 accgcctatt ggtcaaagac gaacccaggt tcagtccacc atggcgcgag cgtccatggt 3360 gcggacacta ctaacacact gtcaaagatt gaccagaata ggcgaaaggc cgagattagg 3420 tcggaagatc gcaccgagcg tttcgagggc ttgatgatac agtcgttcgc catgttggtg 3480 ccaaaacacg cagtttcagt tggacagtgc ttaaatgtca tcagagaaca gcaaggggtt 3540 gatgttgagg cccaggttat tcttgacgac gtttctttgc ggccactgga cggtgatcta 3600 gtacttatta tatcacgcaa tttaggaacc gcaaaaagtt tggtgaatta tttcccagaa 3660 aattttgtag ttggtgacag gctggctttc ttgttcgcag gtggggtgcg ccgcgaaatt 3720 aggttagtta agtcgcaacg cgtggtaacg gacaaagcca atttcatcgg aacaatgtac 3780 cgaacattag atggatccag tgtggatgtc ggtacaagtg ggagcgttgt ccttgattac 3840 gagcgcaatg ctccaatggg tatatctttg gcatcaaacc agggaaccgt tgggtttttc 3900 caagtcgtca ctaagaactt gatgtctcag tgtactcaaa tgctgcgtga caccttgcgt 3960 tcagattatg acgtctgtac ggagctacct acgagtgtgg aaaatgttgt tatttccaca 4020 aaaggtatac atccaaaatc gcacccgcgg tacatggaga agtgttgcca tgtacctatt 4080 gcgaattgtg aacgtcgcac aaaagcaaag tcgaacatac gactgagtga ggttgcgcac 4140 atgtttgttg acaacccgac gttgactact tttgggcccg cagcgctagc cgggaattgg 4200 actgattaca ccaagactcg gaataagatg gaggaagggg tgtctacttt ccccttggga 4260 ttgcttctag aagcatcaaa aatcagatcg gcggaaatcc gagaacaatg taaagtgata 4320 taccctccat tgacattgaa ccaaatcgta tgtggtatag atggcgaggg tcacattgac 4380 catatggagc aaaacacttc cgctgggtgt ccacattttg gaccaaaatc gcagtttatg 4440 agattcgaga cggatagcaa cggcgagcag gtgttcatcg gcctaacaga tgttcaacag 4500 caatcatttg atgagatgat agcttgtttg gaacgtgggc tccccgttcc ttgtttgttt 4560 gttgccacaa agaaggacga ggcgttaaga attgggaaag ttccacggac cttttatgcc 4620 gcatcgatga acgtgattat ggcagttcgg aagtatttct gtccagtttt gcaagcactc 4680 aaagcaaacc ctattcatgc agagattgct atcggcacaa atgcatttgg gaaagattgg 4740 gccgatattt actcacactt ggcgtctcac tccactgaga cggtgattgc gggggattac 4800 agctcatttg atatgtccca caatgcagat gctgtccggt gtgccatgca agtgttgcta 4860 gatcttatag atgaaagctc gctctattcg gacgttgata agctggcggc acggacgctt 4920 gttgagagtc taggccaatc gtttttggcg ttcgatggta catggatgca agtcattgga 4980 tgggtcatgt caggtgtgcc gttaactgct gagttaagct ccaccttgaa tcagatatac 5040 atgagggtgg tatggaaagt tgttactcaa cgaccaatca gtgacttccg ctcgcatgtg 5100 gcgttgattg tgtatggaga tgacaacaac gctgcagtcc gtgacgagcc aagatacaat 5160 tttcaatcgg ttgccgtcac aatgggtaag tttcgtatga cttacacaaa cacagataaa 5220 aatgatgaga tgcacattta tcagaggcta gaagatgctg aattcttgaa acggctttgg 5280 gttccaggac cacttaaggt gtacgcgcct ttgtcatggg atagcatcaa taagcgaatt 5340 gtgtggaccc gaagcagagc cccagatcgt gtgcgctctt tagtgtattc cgttgctgcg 5400 gattgtcttg agcaccaatt tgaagggcta gagtactggg aaaaattttg tcacaccttg 5460 tgtcaagagg aagaggtcga tgggcaagtt ccgtacaaac acttggtaga aggagaccca 5520 attgaccaat tgttttccaa gatcggccca agtcaattaa gcgcagatcc cttttgggaa 5580 acttcgcttg acgacgatgc gtggacagtt tttgctcgcg gaaaactgtc tacttgtatt 5640 tctacttcta aggtcgcgag accggaagtt gcgaggggga gatgtgaaag ccccagaaag 5700 tttcaagacg gaggagtcgt acaactccgt cttagtggta tttaccaacg tacaaggtct 5760 ggggacagat tgagcacctg taccccgcat ttagacgaga aattgcttac tgaaacctta 5820 tgtaatactt tgaaatttta cgacacgtca gggttgcgcg aaaattccca tcagactatg 5880 tctaatggaa ctgaacgccg ccctggtgaa gtcgatggtg atttggcttc tattttgtct 5940 cgacccactc gggtctttac tgacacatgg aaacctggca ccaactttta ccaagcttcc 6000 aatatttgga aaagcttttt gaacgacgat acgatcgtcg ataaaataag ccattttgcc 6060 cgtttgcgtg ggaaaatggt tgtgcgcctt cttatcaatg gcaactcaat gtactatggc 6120 aaacttgtca tgcattattc gccattcgct caagtagatg acgtgtacac ggtatcttcg 6180 gtgcctgatc ctgcagaatg gatacagatc atgcagaaac cacacgtgtc ttttgatgct 6240 acaacgacaa caggggcaac catggaattg cctatgcttt tgcctaacga ttggattgat 6300 ctcacagatg aagatatgat cgcgcgcttg ggtacgctgt acatacatga tctgaacacg 6360 ttggagcacg ccaatgcggg cacagatgaa ttgacggtca cgctagtggc gtggatggaa 6420 gacgttgagt tgtatctacc cacttctaca tcggaaattg ttgaatactg taagggggag 6480 cacaaaggcg gtgatgaata tgaaactgcg aagactagcc ctttgtcgat ttctggcacc 6540 ttaacaactg tagccaacgt ggcggcggct gcatcctctt tgcctcacat tggagcgttt 6600 tcaaaggcga ctgaaatcgt ggcgcgggct ggtgcatcag ccgctaagtt gtttggatat 6660 tctcgacctc ctttattagg ggcacctgaa ccgttcgttc ctcgctacct cagttccctt 6720 gcaaattgtg atgtgcctga aacggttcaa aaattttcca tgaccgggcg ccaggaagtg 6780 tgtgtggact cgagccctct gggcattgat actggagatg agttgcagtt ggccaaatta 6840 gtgggtaaag aagggtattt gaccactttt acttgggatc catcaattct tgttgacggc 6900 aagctgatgg actttggagt gaaccctatg taccattgcc ccagcactac gaatacgggt 6960 gcatatgcgc taactccgtt ggcttatttt agccaacctt ttaggtattg gcgaggatct 7020 atcaagtaca ggtttgaggt tgttgcttcg gcatttcacc ggggcaggct tcgcgtagtg 7080 tgggatcctg tactgtattc tctcgatgca cctttcaacc aaaattttag tgttgtcttg 7140 gacattgctg aacagcgcga ttttactgtg gtagtgccgt atggcgctgc tcagccttat 7200 ctggagaaca ctagggtgcc tgaggacggt gtcatctatg ggtctttgta ctcgtcagtg 7260 gacgaagccc aagataatgg aaatctggca atcatggtgc tgaatgagct gtccacaata 7320 aagaattctg ccgaaaatgt tgtgtacgtg aacgtgtatg tcagcgcagg agacgatttc 7380 cgcgttgcca tgccttgtgc agagaaaata atggagaatc gctttgtttc cacgtctgag 7440 attatatcgg aaagcggtgc agatccaacc ttagttttat cggatgcacc gatgactgaa 7500 ggaaacgtgg atagtcgtgt ggatgaggtt gtgtttgggg aaacagtggt gagttttaga 7560 acgctgctca agaggtacaa tctcagttat ggattttctc caacaattga cgctggtgca 7620 aactcgctca acaggtacac aatatctagt tttccgccat atcgaggagc cgtggatggc 7680 gcaagagaca cgtacaatta tgcgtgccac actttgctca atcacttagc tccgtgtttc 7740 ctgggttatc gtggaggaat tcgccacaag ttcgtacata tgagcccgat tcgctctggt 7800 ttgttggcgg caagtctggg aaacagtggc cctagtggaa ttacctataa ccacgacgtt 7860 tatgacatgg gaaacggagt aacctttgtg tataacgcgt cggagggagt tcaagataat 7920 ccttggcgcg gtctgtctgg tacagcactg accccaagca ccaatcaacc cgtgctcgag 7980 gtggaagtgc cgcattatac gagccgcaaa tatgtgcaca cgcgaagttt tggcacagag 8040 acgcttgtgg cagaaacagc gaaaaacgtc tcaagtcgcg cgccgtcgat taacatttct 8100 atgtttgcgc cttccgtgac tggtcatttc cctgtgctcg attttgtgag cattggggag 8160 gatttcaatt tgctgtattt tatttgtact cctcttattt atcgcggagc ttctccagct 8220 cccacttaaa aatttaaaaa taaaaataac agtcccagtt ggcagggcaa taaaaagcca 8280 acctggttgt tgtaagccgt gccgaaagaa gcggtatcac gacctgtgtc cctccacaca 8340 gtcgttaaaa acaagtgagg taaggagatg tccatctccg agaaacatta acaaaatgga 8400 cgccaaaaag aaaaagaaat tttctttttt ttctttttta attttaaaag ccggcaattt 8460 atattgtctg tctggctatt ttatcgaacc gtgatcggtg actggccagt gccggttact 8520 cattcacgga attttaaaat atcagacttg gtgatacaac ttcggttgta attactaggt 8580 tttttcc 8587 //