ID AY330918; SV 2; linear; genomic RNA; STD; VRL; 8006 BP. XX AC AY330918; XX DT 23-OCT-2003 (Rel. 77, Created) DT 24-SEP-2009 (Rel. 102, Last updated, Version 7) XX DE Beet pseudo-yellows virus segment RNA 1, complete sequence. XX KW . XX OS Beet pseudoyellows virus OC Viruses; Riboviria; Closteroviridae; Crinivirus. XX RN [1] RP 1-8006 RX DOI; 10.1023/B:VIRU.0000025771.48128.f8. RX PUBMED; 15266105. RA Tzanetakis I.E., Martin R.R.; RT "Complete nucleotide sequence of a strawberry isolate of Beet pseudoyellows RT virus"; RL Virus Genes 28(3):239-246(2004). XX RN [2] RP 1-8006 RA Tzanetakis I.E., Martin R.R.; RT ; RL Submitted (26-JUN-2003) to the INSDC. RL Molecular & Cellular Biology Program, Dept. of Botany and Plant Pathology, RL Oregon State University and USDA-ARS, 3420 Orchard Ave, Corvallis, OR RL 97330, USA XX RN [3] RC Sequence update by submitter RP 1-8006 RA Tzanetakis I.E.; RT ; RL Submitted (23-SEP-2009) to the INSDC. RL Dept. of Botany and Plant Pathology, Oregon State University and USDA-ARS, RL 3420 Orchard Ave, Corvallis, OR 97330, USA XX DR MD5; 8a460e1da5041b14449fdf5865d7be85. DR EuropePMC; PMC2786829; 19793810. DR EuropePMC; PMC6136708; 30212464. DR RFAM; RF01095; PK-CuYV_BPYV. XX CC On Sep 23, 2009 this sequence version replaced gi:37677495. XX FH Key Location/Qualifiers FH FT source 1..8006 FT /organism="Beet pseudoyellows virus" FT /segment="RNA 1" FT /mol_type="genomic RNA" FT /isolation_source="Nicotiana benthamiana" FT /note="causes pallidosis disease in strawberry; derived FT from isolate M29 (Fragaria vesca)" FT /db_xref="taxon:72750" FT CDS join(243..6050,6052..7569) FT /codon_start=1 FT /ribosomal_slippage FT /product="ORF 1a/1b fusion polyprotein" FT /note="expressed by +1 ribosomal frameshift" FT /db_xref="GOA:Q6VRA8" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:Q6VRA8" FT /protein_id="AAQ97372.2" FT /translation="MPSINRTITGTELSNNLSLKGKITVFPLDPSIEEKFNFLKEKNFN FT LKKVFCAHRLQVLVDHFNLHGCSFKRMPVPLRNAFGYDFLKINQFIDQKLSVKIGMETI FT KNTSVLEDITGKTGFSDGYLVRKYEDRRHADVFISFGRYFKYDHDIMFRLTFAKTHNRR FT RLRTIVETSLGRMEDRGEVYLKPFTLFDRLPPKAFEMQCLLLSVIERCDDMCEIVNYYK FT NTKFSQPVKKIREKFYRRCTVTMIGVNQSRPPVQMVPRMTPVKPTFKVTPYASTQHIIR FT DDGEEEFVVRLRSGKVIVVRNDRRAVANLFNATLGEGTYKVHSEAFTPNGKRFKHYKRA FT YCWLDAFLLARKKIPLETVPHPCLSYGYLLRCGLEKVMRGRITMVSATHGHFTVERVTE FT TRNARRDTYVGVRWDDGAEVSLKNISNVFDDICSGILSQTTLRAENDVMTNIVRRVSDK FT INSVNSMEKELTINVCLSSSQKKKLCVLFPELNFDFSETSYSSHALFTAMRQCENYVMA FT KRMGFSNFIDAGGDIVSVLHKKLNNVHVCSPLVDVKDAHRHMTRSNQIDNMIGLSETAT FT LCNDKCQDCKVERQNIVAVEVYDMTLHDMAKSLLSHKSKRFDFTVIIPPEVCEPECDVR FT LFDDSLRVHSDGNTVTYFYGDCGESYAHDAQTLRDILRMQIFSVDGVVFKKTLECSKEA FT LHFFSLVPCVGMPPGRLTFSSYYSRSEQDKVLMVIPSRDKFGGISNVKVKVDKSIVYHL FT LEYVMNTALRVDDKAIEYLISQFRARKSISIKGGKVIQTPFELPLDLYPGFLGVILGEG FT IRLREKTHYIARMSYYRHYLPTIINIMIAFMNRTFTKARQFCYESIVDMFRYVMGDSFI FT NDAVNGDKRIFDIMEVYDFRQTVNIVGDGQKRDVINESFQKFLNESKENLRTLDDKFCE FT LDEMFTDSESDKLKDLVLSGGGASNQYVFISFDLYKRIHGFVSRLVSKKSLVDKLVVMI FT SKVITYLLNKFKKMSQSVVTIISDVIRAIIDYVRTGDSRLLKVFKTAGERVTGKISDVN FT NSWMDELEKVLDDEDQLISRSEIETVDNSDQIDDIRPEGVEMSVIQSAENIVLAGGGAH FT SFNLQTLLKLFPISGVFRIKSTWKSLIVSVRSFLKRIVELYHDVKEVPGLILDFVKAGL FT SVVKDYVTSSEGLETLIQNTSLTITNLIVSIFTGNVGVLGIMLSDFLFLGLKIFGIEKK FT YLGCNTVTAQVANVFLPPTYFGPLAFPIRGLLSKVVETKLKMKCSKISQLKPAATDLIA FT KDVTLIRFYDKFSPSALRVCIYISIIFVLFSPRLMLTLGMCCLLIGEMKKFLSTTVLQT FT NISLSYASVLKKTQKSQRMKRFKSILAEKFLRSKTDNQQSNDDEPQMIAGSQIDSDVDV FT EFDYDGSYVEKSKPTQPLVQERKMKDKPVTGNWADVSDSSSVGSIMEFLNYSNLRESTD FT RRFLKCDVTFGLSDIILKYPISSLQVCVTGADSRINALAEYYYLESQKLCIEMGKLDNL FT ARMFNSKTSETKCFKDTVWDLRNNLDDSTLYISENGDAWYRLKRGDLKKTKLEGVSKMT FT LDQSLINFDRSHKGVQFTSEELLGMYTNNRCLGLEKFIDKTTGFKVEPSTDKIKFFNKP FT PGAGKTTTIVNSLVKDLSSRTTCLSLTCTNAGRKEIVSKLKARGVTSPHLYAMTYDSLL FT MKGKEFTITNLYCDEIFMVHCGEWFACLNLIKCQSIECFGDKNQIPYINRVPNTVCHHS FT YSEYMTFPIEYDNISYRCPPDVCYILSSLTDPVGNPLYPGGVYSAGSNCDNLRSLSVEP FT MNSPDEIKFRDEDKHITFTQPEKEEVSRAISKQLKDSKSANTVNEVQGGTFPTVMLFRN FT KQFDNPLYSDVNQFIVSISRHTDRMCYKTISSKLNDYVGEKISALNTVADYIIKEYKFK FT RRVDTYDLKIDCLRAPSTFSRPSASHHRAINEFMTLINPGLSAYNFIHRTLLFEYEQFE FT LPPVENAKLVLSHSKPYAGAEFIVPDIMGKGERSRPNTWKQVMISLSHRNFSAPRINEN FT LDTTKTAERLMSGLMTGLNPLKLSENYDTILPDMYSIDKWLNTRDGDKYRKLKRSFSHT FT LMIQQFENLRLMVKGDMKPKMDMSSYSTYSPPSNIIYYEHVINMFFSPMFLEVFDRLTY FT CLADNIVLYSGMNLDTLGELISAKLQYPISEYNTIEIDFSKFDKPQGVVFKLYEEIVYK FT FFRFSEDIYENIKLTEYFCKAKSRSGVSVELGAQRRTGSPNTWLSNTLVTLGIVLSTYD FT LRDIDLLLVSGDDSLIFSRKSLKNQVNEINRDFGMEAKFIENSVPYFCSKFIIEDRGSI FT RVLPDPVRFFEKLSVPMSLSDFESGVMLRERYTSYKDLMVGYNLDTNIILVDALISVRY FT SIPLMSSYAALCYIHCMCSNITAYKRIYHDSFVVII" FT mat_peptide 243..6050 FT /product="ORF 1a" FT /note="polyprotein with protease, methyltransferase and FT helicase motifs" FT mat_peptide 6052..7566 FT /product="ORF 1b; RdRp; viral polymerase" FT CDS 7639..7803 FT /codon_start=1 FT /product="ORF 2" FT /note="contains transmembrane domain-helix" FT /db_xref="GOA:Q6VRA7" FT /db_xref="UniProtKB/TrEMBL:Q6VRA7" FT /protein_id="AAQ97374.1" FT /translation="MEGVGFHYLFCLNARTICNRWDVFRDVSVIIYILLLYILLFLFIV FT AKCIDIKFS" XX SQ Sequence 8006 BP; 2341 A; 1595 C; 1723 G; 2347 T; 0 other; ataaatttat tttatcattt gttattagcc tacggcgaaa taacttttca atccccaccc 60 gctgattaac gtcagcaccc aagtgcggca ttacggtgtc tcacttattg gttaacaaat 120 ttgcggcgat ttatcgtctc aaatctataa ccattcaacc caataccaaa caatataagg 180 ctgccagtac ctcaaactaa cctgacttta tcaagcatta cttggttgta aacgtcaata 240 caatgccgtc aattaacagg acaatcaccg gcactgagtt gtccaacaac ttgtccctca 300 aagggaagat cacagtgttc ccattagacc catctataga agagaagttc aacttcctta 360 aggagaaaaa cttcaatctt aagaaagtct tttgtgccca cagattgcaa gttttggtcg 420 atcacttcaa cctccatggt tgcagtttca agagaatgcc tgtcccgctc agaaacgctt 480 ttggctatga ttttttaaag ataaaccaat ttatagacca gaagttgtcc gttaaaatcg 540 gtatggaaac aatcaaaaat acatccgttc ttgaagacat aactggtaaa acaggttttt 600 cagacggcta cttggtcagg aaatatgaag atcgccgtca cgcggatgtc ttcatctcat 660 ttggcagata ctttaaatat gatcatgata ttatgtttcg attaacgttt gcaaaaactc 720 ataatcgaag gcgacttcgc accatagttg agacctctct agggagaatg gaggacagag 780 gcgaagtcta cttgaaacct ttcactctgt ttgaccgtct cccgcccaaa gcttttgaaa 840 tgcaatgtct tcttctctcc gttatcgagc gctgtgatga catgtgtgag atcgtcaact 900 attataaaaa taccaagttc tcacaacctg tcaagaaaat cagagaaaaa ttttatcgca 960 ggtgcacagt aactatgatt ggagtgaacc agtccagacc acctgtgcag atggtgcctc 1020 gtatgacacc tgtgaaaccc actttcaagg tgacacccta cgcttcaact caacacatca 1080 tcagagacga tggtgaagaa gaatttgtgg ttagacttcg cagtggaaag gtcattgttg 1140 tgaggaacga ccgaagagct gttgcgaatc tgttcaacgc aaccctagga gaaggcacct 1200 ataaagtcca cagtgaagcc ttcacaccca acggcaagag attcaaacac tacaaaaggg 1260 catactgctg gttggatgcg ttccttctag ctaggaagaa gataccttta gagacagtac 1320 cacatccctg tttgagttat gggtatcttc tccgttgtgg tcttgaaaaa gtgatgagag 1380 gacgcatcac gatggtcagt gccacccatg gtcacttcac ggttgagcga gtcactgaga 1440 cgagaaacgc tcgacgtgac acctacgtag gcgttcgctg ggacgatggc gctgaagttt 1500 ccttgaaaaa cattagcaat gtttttgacg acatttgctc tggcatcctt tcacagacca 1560 cgctccgtgc cgagaacgac gtcatgacga acatcgtcag acgcgtgtca gacaagatca 1620 attctgtgaa cagcatggaa aaggaactta cgattaatgt ttgtctctcc agttcccaga 1680 agaagaaact ttgcgttttg tttcccgaac taaattttga tttttcggaa acttcttatt 1740 cgtcacatgc actcttcaca gctatgaggc aatgtgaaaa ttatgttatg gcgaagagaa 1800 tgggtttctc taatttcatc gacgccggag gtgatatcgt atcagtgttg cacaagaagc 1860 tgaacaacgt gcatgtttgc tccccattag tcgatgtcaa agatgcacac aggcacatga 1920 ctaggagtaa ccaaattgat aatatgatcg gtctctctga aacagcaaca ctgtgtaatg 1980 ataaatgtca ggactgcaaa gtagaaagac agaatatcgt cgccgttgag gtttacgaca 2040 tgactttgca cgatatggcg aaatctttgc tgtcacataa atcgaagcgt ttcgatttta 2100 ctgtcattat tcctccagag gtctgcgaac ctgaatgtga cgtgagactt tttgacgatt 2160 ctttgcgggt ccattctgac ggaaacacag tcacctactt ctatggtgat tgtggtgaga 2220 gttatgccca cgacgctcaa actctcagag acatactgag aatgcagatc ttctcggttg 2280 acggggttgt tttcaagaag acactcgagt gttccaaaga agcccttcac ttcttttccc 2340 tagtaccatg cgtcggtatg cctcctggga gactgacttt ctcgtcgtac tactcacgct 2400 ccgaacaaga caaagttctg atggtaatcc cctcaagaga caaattcgga gggatctcta 2460 atgttaaggt gaaggttgac aaatcaatcg tttaccatct tttggaatac gtgatgaaca 2520 ctgctctgag agttgatgat aaagcaattg aatatctgat ttctcaattt agagcgagaa 2580 agagcatctc gatcaaggga ggtaaagtga ttcaaacccc attcgagcta ccattagatt 2640 tataccccgg ttttcttgga gtcattcttg gtgaggggat tagattgaga gagaaaactc 2700 attatattgc aagaatgagt tactacagac attatctccc gacgatcatt aacataatga 2760 ttgcgtttat gaatagaact ttcaccaaag cgcgtcagtt ttgttatgaa agcatcgttg 2820 acatgttcag atatgttatg ggcgattcat ttatcaacga tgccgttaac ggagataaaa 2880 gaatttttga tatcatggaa gtgtatgatt ttcgtcaaac tgtcaacatc gtcggagatg 2940 gtcagaaacg ggacgtcatt aacgaatcgt ttcaaaaatt tttgaatgaa tcgaaagaga 3000 acctgaggac actcgacgat aagttttgtg agttagacga aatgttcacc gattcagaat 3060 cagacaaact gaaagatctt gtattgtctg gcggtggtgc ttccaatcag tacgttttta 3120 tctcctttga tctctacaag cgtattcatg gcttcgtatc taggcttgtc tcgaagaaat 3180 cacttgttga caaactggtg gtgatgattt caaaggtgat aacttatctc cttaacaaat 3240 tcaagaagat gagccaatct gttgtcacaa tcatctctga tgttattcga gccataatcg 3300 actacgttcg gactggcgac tctagactgt tgaaagtctt caaaaccgcc ggagagagag 3360 tgacgggaaa aatttcagac gtcaacaact cttggatgga tgaattggag aaggtgcttg 3420 atgatgaaga tcaattgatc tctcgaagcg aaatcgaaac cgttgacaac tcagatcaaa 3480 ttgatgatat tagaccggag ggtgttgaga tgagcgtcat tcaatctgcc gagaatatcg 3540 ttcttgctgg cgggggcgca cattctttta atctccaaac tctcctcaaa ctctttccca 3600 tcagtggagt ttttagaata aaatcaacct ggaagagttt gatagttagc gtaaggtcgt 3660 tcctcaagcg aatcgttgaa ctctatcacg atgtaaagga ggtacctggg ctgatcttag 3720 atttcgtcaa agctggtttg tcagttgtca aagattacgt gacgagttct gagggtctcg 3780 agactttgat tcaaaacact tcgctgacca tcaccaattt gatcgtatca atttttaccg 3840 gaaacgtcgg agtgctcggg atcatgttat ccgacttcct tttccttggt ttgaaaatct 3900 ttggtatcga gaagaaatat ctgggttgca ataccgtgac agctcaagtt gccaatgttt 3960 ttctacctcc aacttacttt ggcccactag cttttcccat tagaggcctt ttgagtaaag 4020 tggttgagac gaaattgaaa atgaaatgct caaagatttc tcaattgaaa ccagcagcaa 4080 ctgatttgat cgcgaaagat gtcactctca taagattcta cgacaaattc tcacctagcg 4140 cgttgagagt gtgcatctac atctctatta tatttgttct cttctcacca aggttgatgc 4200 ttactcttgg catgtgttgt ttgttgattg gcgagatgaa aaagttcctg agcacgacag 4260 ttctacaaac caacataagt ttgagttacg cctccgttct gaagaaaacg cagaaatccc 4320 aacggatgaa gaggtttaaa tcaatcttgg cagaaaaatt tttgagatcg aagactgata 4380 atcaacaatc taatgatgat gagccacaga tgattgccgg ttcccagatc gattccgatg 4440 ttgatgttga gtttgattat gacggttcgt acgttgaaaa atcgaaacca actcaacctc 4500 ttgttcaaga acggaagatg aaagataagc ccgtcaccgg taattgggcg gacgtgagtg 4560 atagcagttc tgtcggatcc attatggagt tcctgaacta ttcgaactta agagaatcta 4620 cggataggag atttcttaaa tgtgatgtaa cattcgggtt gagcgatatc attttaaagt 4680 atccaatttc cagtcttcaa gtttgcgtca ctggggcaga ctcgaggatc aatgcgcttg 4740 cggaatacta ttatttggaa tctcaaaaat tgtgtattga aatgggaaag ctggataatt 4800 tagctcgcat gttcaattcc aagaccagcg agaccaagtg cttcaaagac actgtttggg 4860 atttgagaaa caatcttgac gactcaactt tgtacatctc tgaaaatggt gacgcttggt 4920 ataggttgaa acgaggagat ctaaagaaga caaagctgga aggcgtgtct aagatgactc 4980 tggaccaaag cctgatcaat tttgatagat ctcacaaagg agtgcaattc acaagtgaag 5040 aacttttggg tatgtacacc aataaccgtt gcttaggatt ggagaaattt attgacaaaa 5100 ctactggttt caaggttgaa ccttcgacgg ataaaataaa gttctttaac aaacctccgg 5160 gcgcgggaaa aaccacgacg atcgtgaact ctttggtcaa agatctttct agtaggacca 5220 cttgcctatc tctcacttgc actaacgcgg gtaggaagga aatcgtgagt aaattgaaag 5280 caagaggtgt tacgtcccct catctttatg ctatgactta tgattcactc ttgatgaaag 5340 gcaaggagtt cactataacc aatttgtatt gtgatgagat cttcatggtt cactgtggtg 5400 aatggttcgc ttgtttaaac ctgattaaat gtcagtcaat tgagtgtttt ggagacaaaa 5460 atcagattcc ttatatcaat agggttccca acactgtctg tcatcactct tacagtgaat 5520 acatgacttt ccccatcgag tacgataaca tctcgtacag gtgcccaccg gatgtctgtt 5580 acattctatc cagcctgacc gatccagttg gtaacccttt gtacccggga ggtgtttact 5640 ctgctggcag taattgtgac aatttgagat cccttagtgt cgaaccgatg aactctcctg 5700 atgagatcaa gttccgggac gaagacaaac acatcacttt cacacaacca gaaaaggagg 5760 aggtgtcacg cgcaataagt aaacagttga aggatagcaa aagcgcgaat actgtgaatg 5820 aggtccaagg tggaactttc ccgactgtca tgctcttcag aaataagcag tttgataatc 5880 ctctgtactc cgatgttaat caattcattg tgagcatttc aagacacact gacagaatgt 5940 gttacaaaac gatctcatct aagctgaacg actatgtggg cgagaaaatt tcggcgctta 6000 acactgtagc cgattacatc atcaaggagt acaagtttaa acggcgagtt tgacacatac 6060 gatctaaaga tcgattgttt gcgggcccct tcgaccttca gccggccgtc tgcctcccac 6120 cacagagcta tcaacgaatt tatgacgttg ataaatccgg gtttgagtgc ctacaatttc 6180 attcatcgca ctctgttgtt tgagtacgag cagtttgaat tgcctccagt tgaaaatgcg 6240 aaacttgtcc tcagtcattc caagccttat gcgggtgccg aatttattgt acctgacata 6300 atggggaagg gtgaaaggag caggccaaac acttggaaac aagtgatgat ttctctgtcc 6360 cacaggaact tcagtgcacc caggatcaat gaaaaccttg acacaacgaa gacagccgag 6420 agattgatgt ctggtttgat gacgggtctg aatcctctta agttgagtga gaactacgat 6480 accatcctcc ctgatatgta cagtattgac aaatggttga acaccagaga tggggacaag 6540 tatcgaaaat tgaagaggag tttttcgcac actctgatga ttcagcagtt cgagaatttg 6600 aggctcatgg tcaagggaga catgaaaccg aagatggata tgtccagtta ttcaacttat 6660 tctccaccgt ccaacatcat ttattacgaa cacgtgataa atatgttttt ctcccctatg 6720 tttctcgagg tttttgatag attaacatat tgtttggccg acaatattgt cttatactcg 6780 ggcatgaatc ttgacactct cggtgagctg ataagcgcga aacttcaata cccgatctca 6840 gagtacaaca ccatcgaaat cgactttagt aagtttgata aacctcaagg tgtcgttttc 6900 aaattgtatg aagagattgt gtataagttc ttcagatttt ccgaagacat atacgagaat 6960 atcaagctga cagagtattt ctgtaaagcg aagagtagaa gtggagtgtc ggttgaattg 7020 ggagcacaaa gaagaacagg ttcgccaaac acttggttat caaacactct cgttaccctt 7080 ggaatcgtcc tttcaaccta cgatttgaga gatattgatc ttttgttggt gagcggggat 7140 gacagcttga tcttttcaag gaaatctttg aaaaatcaag tgaacgagat aaacagagac 7200 ttcggcatgg aggctaaatt cattgagaac tcggtccctt atttctgttc aaagttcatc 7260 atcgaggata ggggttcgat tcgtgttcta ccagatccag ttcgattttt tgagaagttg 7320 tctgtaccga tgagtttgag cgattttgaa agcggggtaa tgttgcggga aaggtatact 7380 tcatacaaag acctcatggt aggttataat ctggatacca acattatctt ggtcgacgct 7440 ttgatttccg ttcgatattc cattccgtta atgagctcct acgcggcttt gtgttatata 7500 cattgcatgt gctcgaacat cacagcttat aaacggatat accacgacag ttttgttgta 7560 attatttaag tttcttttac ctctgtcttt aaaatccgcg attgttgtat tttcatattc 7620 attggtttgg gttaaattat ggaaggggtt ggatttcatt atcttttctg tttaaatgct 7680 agaactattt gtaatagatg ggacgttttt agggatgtct ccgttatcat ttacatcctc 7740 ttattgtaca ttttactttt cctttttata gttgcaaagt gtattgatat aaagttttct 7800 tagtttttct ttaaaactac tgttaggtat tttagttttt atcgtttcta ccttagagtc 7860 atatacgcgt gttatacgta gtgtgtattg taaaatctca aaaatacaat catttataat 7920 attagttcat agtttagcaa tattataatg tttggtcgaa tgctactaga gcagcctgac 7980 caaactagta ttagtaaata aaggcg 8006 //