Dbfetch
ID AY318866; SV 1; linear; genomic RNA; STD; VRL; 6304 BP. XX AC AY318866; XX DT 02-JUL-2003 (Rel. 76, Created) DT 04-APR-2012 (Rel. 112, Last updated, Version 3) XX DE Youcai mosaic virus, complete genome. XX KW . XX OS Youcai mosaic virus OC Viruses; Riboviria; Virgaviridae; Tobamovirus. XX RN [1] RP 1-6304 RA Ryabov E.V., Walsh J.; RT "Infectious cDNA clone of Crucifer tobamovirus"; RL Unpublished. XX RN [2] RP 1-6304 RA Ryabov E.V., Walsh J.; RT ; RL Submitted (09-JUN-2003) to the INSDC. RL Horticulture Research International, East Malling, West Malling, Kent ME19 RL 6BJ, United Kingdom XX DR MD5; 191d4a3ed3f4f30ddc33845719a8f1e9. DR RFAM; RF00225; IRES_Tobamo. DR RFAM; RF01072; TMV_UPD-PK3. XX FH Key Location/Qualifiers FH FT source 1..6304 FT /organism="Youcai mosaic virus" FT /mol_type="genomic RNA" FT /db_xref="taxon:228578" FT CDS 69..4862 FT /codon_start=1 FT /transl_except=(pos:3378..3380,aa:OTHER) FT /product="RNA replicase, read-through component" FT /db_xref="GOA:Q7TD02" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:Q7TD02" FT /protein_id="AAP79445.1" FT /translation="MAQFQQTVNMQTLQAAAGRNSLVNDLASRRVYDNVVEELNARSRR FT PKVHFSKSVSTEQTLLASNAYPEFEISFTHTQHAVHSLAGGLRTLELEYLMMQVPFGSL FT TYDIGGNFAAHLFKGRDYVHCCMPNLDVRDIARHEGHKEAIFSYLSRLDRQKRPVPEYQ FT RAAFYNYAENPHFVHCDRPFQQCELSTVNGADTYAIALHSIYDIPADEFGAALLRKNVK FT ICYAAFHFHENMLLDCDSVTLEDIGATFQRAGDKLNFFFHNESTLNYTHSFSNIIKYVC FT KTFFPASQRYVYHKEFLVTRVNTWYCKFTRVDTFTLFRGVYKTSVDSEEFYKAMDDAWE FT YKKTLAMLNSERTIFKDSAAMNFWFPKVRDMVIIPLFDASITTGRMSRREVLVNKDFVY FT TVLNHIKTYQAKALTYANVLSFVESIRSRVIINGVTARSEWDTDKAILGPLAMTFFLVT FT KLSHVQDEIVLKKFQKFDATAKELIWSSLCDALKGVIPSVKETLARGGFVKLAEESLEI FT KIPELYCTFTDRLVLEYKRTEEFQSCDLSKPLEESEKYYNALSELSVLENLDSFDLDAF FT KELCQKKNVDPDVAAKVVVAIMNSELTLPFKKPTEEEVAEALSGEVVQDEGLSLSNNAP FT FPCVSNLKEGLIPACGLGPKGANFDRVDMDISEFHLKSVDAVKKGAMMSAVYTGKIKVQ FT QMKNYVDYLSASLSATVSNLCKVLRDVHGVDPESQEKSGVWDVRRGRWLLKPNAKCHAW FT GVAEDANHKLVIVLLNWDEGKPVCDETWFRLAVSSDSLVYSDMGKLKTLTACCRDGEPP FT EPTAKVVLVDGVPGCGKTKEILEKVNFSEDLVLVPGKEASKMIIRRANQAGVTRADKDN FT VRTVDSFLMHPPKRVFKRLFIDEGLMLHTGCVNFLTLLSHCDVAYVYGDTQQIPFICRV FT ANFPYPSHFAKLVVDEKEDRRVTLRCPADVTYFLNTRYDGSVMCTSSVERSVSAEVVRG FT KGALNPITLPLEGKILTFTQADKFELLDKGYKDVNTVHEVQGETYEKTAIVRLTATPLE FT IISRASPHVLVALTRHTTRCKYYTVVLDPMVNVISELGKLSNFLLEMYKVESGTQXQLQ FT IDTVFKGTNLFVPTPKSGDWRDMQFYYDTLLPGNSTILNEFDAVTMNLRDISLNVKDCR FT IDFSKSVQVPKERPVFMKPKLRTAAEMPRTAGLLENLVAMIKRNMNAPDLTGTIDIEDT FT ASLVVEKFWDAYVVKEFSGTDGMAMTRESFSRWLSKQESSTVGQLADFNFVDLPAVDEY FT KHMIKSQPKQKLDLSIQDEYPALQTIVYHSKKINAIFGPMFSELTRMLLERIDTSKFLF FT YTRKTPTQIEEFFSDLDSSQAMEILELDISKYDKSQNEFHCAVEYKIWEKLGIDEWLAE FT VWRQGHRKTTLKDYTAGIKTCLWYQRKSGDVTTFIGNTIIIAACLSSMIPMDKVIKAAF FT CGDDSLIYIPKGLDLPDIQAGANLTWNFEAKLFRKKYGYFCGRYVIHHDRGAIVYYDPL FT KLISKLGCKHIRDEVHLEELRRSLCDVTSNLNNCAYFSQLDEAVAEVHKTAVGGAFVYC FT SIIKYLSDKRLFKDLFFV" FT CDS 69..3380 FT /codon_start=1 FT /product="RNA replicase componenet" FT /db_xref="GOA:Q7TD03" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:Q7TD03" FT /protein_id="AAP79444.1" FT /translation="MAQFQQTVNMQTLQAAAGRNSLVNDLASRRVYDNVVEELNARSRR FT PKVHFSKSVSTEQTLLASNAYPEFEISFTHTQHAVHSLAGGLRTLELEYLMMQVPFGSL FT TYDIGGNFAAHLFKGRDYVHCCMPNLDVRDIARHEGHKEAIFSYLSRLDRQKRPVPEYQ FT RAAFYNYAENPHFVHCDRPFQQCELSTVNGADTYAIALHSIYDIPADEFGAALLRKNVK FT ICYAAFHFHENMLLDCDSVTLEDIGATFQRAGDKLNFFFHNESTLNYTHSFSNIIKYVC FT KTFFPASQRYVYHKEFLVTRVNTWYCKFTRVDTFTLFRGVYKTSVDSEEFYKAMDDAWE FT YKKTLAMLNSERTIFKDSAAMNFWFPKVRDMVIIPLFDASITTGRMSRREVLVNKDFVY FT TVLNHIKTYQAKALTYANVLSFVESIRSRVIINGVTARSEWDTDKAILGPLAMTFFLVT FT KLSHVQDEIVLKKFQKFDATAKELIWSSLCDALKGVIPSVKETLARGGFVKLAEESLEI FT KIPELYCTFTDRLVLEYKRTEEFQSCDLSKPLEESEKYYNALSELSVLENLDSFDLDAF FT KELCQKKNVDPDVAAKVVVAIMNSELTLPFKKPTEEEVAEALSGEVVQDEGLSLSNNAP FT FPCVSNLKEGLIPACGLGPKGANFDRVDMDISEFHLKSVDAVKKGAMMSAVYTGKIKVQ FT QMKNYVDYLSASLSATVSNLCKVLRDVHGVDPESQEKSGVWDVRRGRWLLKPNAKCHAW FT GVAEDANHKLVIVLLNWDEGKPVCDETWFRLAVSSDSLVYSDMGKLKTLTACCRDGEPP FT EPTAKVVLVDGVPGCGKTKEILEKVNFSEDLVLVPGKEASKMIIRRANQAGVTRADKDN FT VRTVDSFLMHPPKRVFKRLFIDEGLMLHTGCVNFLTLLSHCDVAYVYGDTQQIPFICRV FT ANFPYPSHFAKLVVDEKEDRRVTLRCPADVTYFLNTRYDGSVMCTSSVERSVSAEVVRG FT KGALNPITLPLEGKILTFTQADKFELLDKGYKDVNTVHEVQGETYEKTAIVRLTATPLE FT IISRASPHVLVALTRHTTRCKYYTVVLDPMVNVISELGKLSNFLLEMYKVESGTQ" FT CDS 4874..5671 FT /codon_start=1 FT /product="cell-to-cell movement protein" FT /db_xref="GOA:Q7TD01" FT /db_xref="InterPro:IPR001022" FT /db_xref="InterPro:IPR028919" FT /db_xref="UniProtKB/TrEMBL:Q7TD01" FT /protein_id="AAP79446.1" FT /translation="MSYEPKVSDFLALTKKEEILPKALTRLKTVSISTKDVISVKESES FT LCDIDLLVNVPLDKYRYVGVLGVVFTGEWLVPDFVKGGVTVSVIDKRLENSRECIIGTY FT RAAAKDRRFQFKLVPNYFVSTADAKRKPWQVHVRIQNLKIEAGWQPLALEVVSVAMVTN FT NVVVKGLREKVIAVNDPNVEGFEGVVDDFVDSVAAFKAIDSFRKKKKKIGGRDVNNNKY FT RYRPERYAGPDSLQYKEENGLQHHELESVPVFRSDVGRAHSDA" FT CDS 5595..6068 FT /codon_start=1 FT /product="coat protein" FT /db_xref="GOA:Q91PA5" FT /db_xref="InterPro:IPR001337" FT /db_xref="InterPro:IPR036417" FT /db_xref="UniProtKB/TrEMBL:Q91PA5" FT /protein_id="AAP79447.1" FT /translation="MVYNITSSNQYQYFAAMWAEPTAMLNQCVSALSQSYQTQAARDTV FT RQQFSNLLSAIVTPNQRFPETGYRVYINSAVLKPLYESLMKSFDTRNRIIETEEESRPS FT ASEVANATQRVDDATVAIRSQIQLLLNELSNGHGLMNRAEFEVLLPWATAPAT" XX SQ Sequence 6304 BP; 1778 A; 1192 C; 1606 G; 1728 T; 0 other; gttttaattt tattgcaaca acaacaacaa attacaataa caacaaaaca aatacaaaca 60 acaacaacat ggcacaattt caacaaacag taaacatgca aacattgcag gctgccgcag 120 ggcgcaacag cctggtgaat gatttagcct cacgacgcgt ttatgacaat gttgtcgagg 180 agctaaatgc acgctcgaga cgccctaagg tccatttctc caaatcagtg tctacggaac 240 agacgctgtt agcttcaaac gcttatccgg agtttgagat ttcctttact catacccaac 300 atgccgtaca ctcccttgcg ggtggcctaa ggactcttga gttggagtat ctcatgatgc 360 aagttccgtt cggttctcta acgtacgaca tcggtggtaa ctttgcagcg caccttttca 420 aaggacgcga ctacgttcac tgctgtatgc caaacttgga tgtacgcgat atagctcgtc 480 atgaagggca caaggaagcg atcttcagtt acctttctcg cctagatagg cagaagcgac 540 cagtccccga atatcagaga gcggcattct ataactacgc ggagaatcct catttcgttc 600 actgtgatcg accatttcag cagtgtgagc taagtaccgt taacggtgcg gacacttacg 660 ctattgcact tcatagtata tatgatattc ctgctgatga gtttggtgca gcgctactca 720 ggaagaatgt gaaaatttgt tacgcggctt tccatttcca cgaaaatatg ctccttgact 780 gtgactctgt cacactggag gacattggag ccacatttca acgcgctggt gacaagttga 840 atttcttctt ccacaacgag agcacactca attacaccca tagttttagt aatataatta 900 agtacgtgtg taagactttc tttcctgcga gtcagcgtta tgtgtatcat aaggagtttt 960 tagttactag agttaatacg tggtattgta agtttactag agtcgatact tttactcttt 1020 tccgtggtgt gtacaagaca agtgtggata gcgaggagtt ctacaaggct atggatgacg 1080 cgtgggaata caagaagacc ttggctatgc taaattccga gaggaccatc ttcaaggaca 1140 gtgctgccat gaatttctgg tttccaaagg tcagagatat ggtcatcata cctctcttcg 1200 acgcatctat cacaactgga aggatgtcta gaagggaagt gttggtgaac aaggattttg 1260 tttacacagt ccttaaccac atcaaaacct atcaagcaaa ggccttaaca tatgctaatg 1320 tgttatcttt cgttgagtct attaggtcta gagttataat taacggtgtc actgccaggt 1380 cggaatggga taccgacaag gcaatcttag gtccgttagc catgacattt ttccttgtca 1440 caaagttgag tcatgttcag gacgagatcg tccttaagaa gttccaaaag tttgacgcca 1500 ctgccaaaga actgatttgg tcaagtctct gcgatgccct gaagggggtt ataccctcgg 1560 tcaaggagac tctcgcgcgc ggtggtttcg ttaagcttgc tgaagagagt ttagagatca 1620 aaattccgga gttatattgc acttttaccg acaggttagt gcttgaatat aagaggacag 1680 aggagtttca gtcgtgtgat ctgtccaaac ctttggaaga gtctgagaag tactataatg 1740 cgttatccga gctgtctgtg cttgaaaatc ttgactcgtt tgatctggat gcctttaagg 1800 agttgtgtca aaagaagaac gtcgaccctg atgtcgctgc gaaggtggtg gtggcgatta 1860 tgaatagtga attgacgtta ccgttcaaga aacctacaga agaggaagtt gctgaggcgc 1920 ttagcggaga agtggtgcag gatgaaggat tgagtttgag taacaacgca cccttcccat 1980 gtgtgagtaa cctcaaggag ggtttgattc cggcgtgtgg attgggtccg aaaggtgcga 2040 acttcgacag agtggatatg gacatatctg agttccatct caagagtgta gatgcagtta 2100 aaaaaggggc tatgatgtca gcggtgtaca cgggaaagat caaggttcaa cagatgaaga 2160 actacgtcga ttacctaagt gcctcattgt cagctacagt ctcaaacctc tgtaaagtgc 2220 ttagggatgt tcacggagtt gaccctgaat ctcaagagaa gtcgggtgtg tgggacgtga 2280 gaagaggacg ctggttacta aaacctaacg cgaagtgtca cgcttggggt gttgcggaag 2340 atgctaacca caagttagtt atcgtgttac ttaactggga tgaagggaaa cctgtctgtg 2400 atgagacgtg gtttagattg gcagtttcta gcgactcttt ggtgtactct gatatgggca 2460 aactcaagac gttaacggca tgttgcagag atggtgagcc tccggaacct acggccaaag 2520 tggtactcgt tgacggtgtt ccgggctgtg gaaaaacaaa ggaaattttg gagaaggtta 2580 acttttccga agacttggtg ttggttcctg gaaaagaagc gtcaaaaatg attattcgaa 2640 gagcaaatca ggcaggtgtt acaagagctg ataaggacaa tgtgaggacg gtagattcct 2700 tcttgatgca ccctccaaaa agggtgttca aaaggttgtt tatcgatgaa ggattaatgt 2760 tgcacacagg ctgtgttaac tttttgacgt tgctatctca ttgtgatgtg gcatacgttt 2820 acggtgacac acagcagatt ccctttatct gtagggttgc gaattttcct tatccctcgc 2880 atttcgcgaa gcttgttgtt gacgagaagg aagatagaag ggtcacgctc aggtgtccgg 2940 cagacgttac atatttcttg aatacgaggt acgatggatc agtgatgtgt acaagctctg 3000 tggagaggtc ggttagtgcg gaggttgtga gaggaaaagg tgctttaaac ccaataactt 3060 taccgttaga ggggaaaatt ctcaccttca cgcaagccga taagttcgag ttgttggata 3120 agggttacaa agatgtgaac acggttcatg aagttcaggg cgaaacgtac gaaaagacag 3180 cgatcgttcg gttaacagcg actcccttgg agatcatatc aagagcgtca cctcatgttt 3240 tggtggcgtt gacaaggcac actactcgat gtaaatatta cacggttgtg ttggacccaa 3300 tggtgaatgt gatttctgaa ctggggaaac tgtccaactt tcttctcgag atgtacaagg 3360 tggagtcggg gacccaatag caattacaga tcgacacagt gttcaaaggg acgaatctgt 3420 tcgtcccgac gcctaagtca ggagattggc gagacatgca gttctattat gacactcttc 3480 ttcccggaaa cagtactatt cttaatgaat ttgatgctgt gacgatgaac ttgagggata 3540 tttccttaaa tgtcaaggac tgtaggatcg acttctcgaa atctgtgcaa gtgccgaaag 3600 agcggccggt ttttatgaaa cctaaattga ggacggcggc agagatgcca cgtacagctg 3660 gtctacttga aaacctagtc gcgatgatta aaagaaacat gaacgcacca gatttgacag 3720 ggacgattga catagaggac actgcgtcgt tagtagttga aaagttttgg gatgcttatg 3780 tggtgaaaga attcagcgga acagacggaa tggctatgac aagggaaagt ttttctagat 3840 ggctctctaa acaagagtcg tctacagttg gtcagttagc ggatttcaac tttgtggatt 3900 tgccggcggt ggacgagtac aagcatatga tcaagagcca accaaagcag aagttagact 3960 tgagcattca agacgaatac cctgcattgc agactatagt ctatcattca aagaagatca 4020 atgcgatttt tggtcctatg ttttcagagt tgacgaggat gctccttgaa agaatagata 4080 cttctaagtt tctgttttac accaggaaga caccaacgca gattgaagag tttttctctg 4140 atttagattc gtcacaagcg atggagattt tggagctcga catttcaaag tatgacaagt 4200 cacaaaacga gttccattgc gctgttgagt acaaaatatg ggaaaagctt ggaattgacg 4260 agtggttagc ggaggtgtgg agacaaggac acaggaaaac gacgctcaag gactacacgg 4320 ctggcattaa gacgtgtttg tggtaccaaa ggaaaagcgg tgacgtgact accttcattg 4380 ggaacacaat tatcattgca gcgtgtttga gttctatgat cccgatggac aaagtgatca 4440 aggcggcttt ctgcggtgac gacagtttga tatatattcc gaaaggtcta gaccttccgg 4500 atattcaagc cggagccaac cttacgtgga actttgaggc caaattgttc aggaaaaagt 4560 acgggtattt ttgcggtcgt tacgttattc accacgatag aggagctatt gtatattatg 4620 atccgctcaa gttgatatct aagttaggat gtaaacatat tagagatgaa gttcacttag 4680 aagagttgcg tagatctctg tgtgatgtaa ctagtaattt aaataattgt gcgtattttt 4740 cacagttaga tgaggccgtt gccgaggttc ataagaccgc ggttggcgga gcgtttgttt 4800 actgtagtat aattaaatat ttgtcagata aaaggttgtt taaagatttg ttttttgttt 4860 gactaagtcg ataatgtctt acgagcctaa agttagtgac ttccttgctc ttacgaaaaa 4920 ggaggaaatt ttacccaagg ctttgacgag attaaagact gtctctatta gtactaagga 4980 tgttatatct gttaaggagt ctgagtccct gtgtgatatt gatttgttag tgaatgtgcc 5040 attagataag tataggtatg tgggtgtttt gggtgttgtt ttcaccggtg aatggctggt 5100 accggatttc gttaaaggtg gggtaacagt gagcgtgatt gacaaacggc ttgaaaattc 5160 cagagagtgc ataattggta cgtaccgagc tgctgcaaag gacagaaggt tccagttcaa 5220 gctggttcca aattacttcg tatccactgc ggatgccaag cgaaaaccgt ggcaggttca 5280 tgtgcgaatt caaaatctga agatcgaagc tggatggcaa cctctagctc tagaggtggt 5340 ttctgttgcc atggttacta ataacgtggt tgttaaaggt ttgagggaaa aggtcatcgc 5400 agtgaatgat ccgaacgtcg aaggtttcga aggtgtggtt gacgatttcg tcgattcggt 5460 tgctgcattc aaggcgattg acagtttcag aaagaaaaag aaaaagattg gaggaaggga 5520 tgtaaataat aataagtata gatatagacc ggagagatac gccggtcctg attcgttaca 5580 atataaagaa gaaaatggtt tacaacatca cgagctcgaa tcagtaccag tatttcgcag 5640 cgatgtgggc agagcccaca gcgatgctta accagtgcgt gtctgcgttg tcgcaatcgt 5700 atcaaactca ggcggcaaga gatactgtta gacagcagtt ctctaacctt ctgagtgcga 5760 ttgtgacacc gaaccagcgg tttccagaaa caggataccg ggtgtatatt aattcagcag 5820 ttctaaaacc gttgtacgag tctctcatga agtcctttga tactagaaat aggatcattg 5880 aaactgaaga agagtcgcgt ccatcggctt ccgaagtagc taatgcaaca caacgtgttg 5940 atgatgcgac cgtggccatc aggagtcaaa ttcagctttt gctgaacgag ctctccaacg 6000 gacatggtct gatgaacagg gcagagttcg aggttttatt gccttgggct actgcgccag 6060 ctacataggc gtggtgcaca cgatagtgca tagtgttttt ctctccactt aaatcgaaga 6120 gatatactta cggtgtaatt ccgcaagggt ggcgtaaacc aaattacgca atgttttagg 6180 ttccatttaa atcgaaacct gttatttcct ggatcacctg ttaacgtacg cgtggcgtat 6240 attacagtgg gaataactaa aagtgagagg ttcgaatcct ccctaacccc gggtaggggc 6300 ccca 6304 //