ID AY312063; SV 1; linear; genomic RNA; STD; VRL; 4053 BP. XX AC AY312063; XX DT 01-JUL-2003 (Rel. 76, Created) DT 01-JUL-2003 (Rel. 76, Last updated, Version 1) XX DE Turnip crinkle virus isolate UK, complete genome. XX KW . XX OS Turnip crinkle virus OC Viruses; Riboviria; Tombusviridae; Procedovirinae; Betacarmovirus. XX RN [1] RP 1-4053 RA Ryabov E.V.; RT ; RL Submitted (03-JUN-2003) to the INSDC. RL Plant Pathology, Horticulture Research International, East Malling, West RL Malling, Kent ME19 6BJ, United Kingdom XX DR MD5; 8433e73eb8a5999f50b473fa65d70791. DR EuropePMC; PMC3081161; 18031280. DR EuropePMC; PMC353744; 14990735. DR RFAM; RF00500; TCV_H5. DR RFAM; RF00502; TCV_Pr. XX FH Key Location/Qualifiers FH FT source 1..4053 FT /organism="Turnip crinkle virus" FT /isolate="UK" FT /mol_type="genomic RNA" FT /note="infectious clone" FT /db_xref="taxon:11988" FT CDS 63..2390 FT /codon_start=1 FT /transl_except=(pos:813..815,aa:OTHER) FT /product="P88 protein" FT /note="RNA replicase; translated by read-through of stop FT codon" FT /db_xref="GOA:P17460" FT /db_xref="InterPro:IPR002166" FT /db_xref="InterPro:IPR007094" FT /db_xref="UniProtKB/Swiss-Prot:P17460" FT /protein_id="AAP78486.1" FT /translation="MPLLHTLNTALAVGLLGARYYPEVQTFLGLPDYVGHMKNVVQSVF FT QGSGLVVVSSSTVGVRGTYSNRGQIGSSLGCILAVPDSGADIEIDLDRLVGTEEEATSC FT LVEAVGSTADVPRRRVRQKGRFAMHAVNAAKLHFCGVPKPTEANRLAVSKWLVQYCKER FT HVVDSHIRTIVNTALPRVFTPDAEDIQVVLDLHSVRAHNHRNALAEAGKVRKWWVNLAM FT HPMTGRSWSRAWRRLCRLPDDQAISFVRXGCLRELVGRETQISRGENPAMRVFPLANPP FT KVRRIFHICGMGNGLDFGVHNNSLNNLRRGLMERVFYVEDAQKQLKPAPQPIPGIFGKL FT SGIRKRLVRLAGNHTPVPREKYPSFYKGRRATIYQKALDSLHDRPVSRKDAELKTFVKA FT EKINFTAKKDPAPRVIQPRDPRYNIEVGKYLKPYEHHLYRAIDAMWGGPTVLKGYDVGE FT LGNIMSNTWDKFRKTCAIGFDMKRFDQHVSVDALRWEHSVYNAGFNCPELAQLLTWQLT FT NKGVGRASDGFIKYQVDGCRMSGDVNTALGNCLLACSITKYLMKGIKCKLINNGDDCVL FT FFEAEEVDRVRERLHHWIDFGFQCIAEEPQYELEKVEFCQMSPIFDGEGWVMVRNPRVS FT LSKDSYSTTQWANEKDAARWLAAIGECGLAIAGGVPVLQSYYSCLKRNFGPLAGDYKKK FT MQDVSFDSGFYRLSKNGMRGSKNVSQDARFSFYRGFGYTPDEQEALEEYYDNLELLCEW FT DPTGYKEELSDRWILNEFPTTL" FT CDS 63..815 FT /codon_start=1 FT /product="P28 protein" FT /db_xref="GOA:P17460" FT /db_xref="InterPro:IPR002166" FT /db_xref="InterPro:IPR007094" FT /db_xref="UniProtKB/Swiss-Prot:P17460" FT /protein_id="AAP78490.1" FT /translation="MPLLHTLNTALAVGLLGARYYPEVQTFLGLPDYVGHMKNVVQSVF FT QGSGLVVVSSSTVGVRGTYSNRGQIGSSLGCILAVPDSGADIEIDLDRLVGTEEEATSC FT LVEAVGSTADVPRRRVRQKGRFAMHAVNAAKLHFCGVPKPTEANRLAVSKWLVQYCKER FT HVVDSHIRTIVNTALPRVFTPDAEDIQVVLDLHSVRAHNHRNALAEAGKVRKWWVNLAM FT HPMTGRSWSRAWRRLCRLPDDQAISFVR" FT CDS 2357..2575 FT /codon_start=1 FT /product="P8 protein" FT /db_xref="GOA:P17461" FT /db_xref="InterPro:IPR007982" FT /db_xref="UniProtKB/Swiss-Prot:P17461" FT /protein_id="AAP78487.1" FT /translation="MDPERIPYNSLSDSDAPGKRKKGGEKSAKKRLVASHAASSALNKK FT RDEGSASHGGTWVIVADKVEVSINFNF" FT CDS 2496..2753 FT /codon_start=1 FT /product="P9 protein" FT /db_xref="GOA:Q7TD19" FT /db_xref="UniProtKB/Swiss-Prot:Q7TD19" FT /protein_id="AAP78488.1" FT /translation="MKVLLATGVLGLLLLIKWKSQSTSTSNQVCQCPTSPWVIYAFYNS FT LSLVLLLCHLIPEIKPIHTSYNTHDSSKQQHISINTGNGK" FT CDS 2743..3798 FT /codon_start=1 FT /product="coat protein" FT /db_xref="GOA:P06663" FT /db_xref="InterPro:IPR000937" FT /db_xref="InterPro:IPR029053" FT /db_xref="PDB:3ZX8" FT /db_xref="PDB:3ZX9" FT /db_xref="PDB:3ZXA" FT /db_xref="UniProtKB/Swiss-Prot:P06663" FT /protein_id="AAP78489.1" FT /translation="MENDPRVRKFASEGAQWAIKWQKKGWSSLTSRQKQTARAAMGIKL FT SPVAQPVQKVTRLSAPVALAYREVSTQPRVSTARDGITRSGSELITTLKKNTDTEPKYT FT TAVLNPSEPGTFNQLIKEAAQYEKYRFTSLRFRYSPMSPSTTGGKVALAFDRDAAKPPP FT NDLASLYNIEGCVSSVPWTGFILTVPTDSTDRFVADGISDPKLVNFGKLIMATYGQGAN FT DAAQLGEVRVEYTVQLKNRTGSTSDAQIGDFAGVKDGPRLVSWSKTKGTAGWEHDCHFL FT GTGNFSLTLFYEKAPVSGLENADASDFSVLGEAAAGSVQWAGVKVAERGQSVKMVTTEE FT QPRGKWQALRI" XX SQ Sequence 4053 BP; 1091 A; 981 C; 1106 G; 875 T; 0 other; gtaatctgca aatccctggc acccgcctaa aattgccctc atcaaccttc tctcttttca 60 cgatgcctct cctacataca ctcaacacag cgctcgcagt gggactccta ggagccaggt 120 actaccctga ggtgcaaacc ttcttggggc tacctgacta cgtgggtcac atgaagaatg 180 tagtacaatc tgttttccag ggatctgggc tagtagtagt gtcctccagc acagtcggtg 240 ttagggggac gtatagtaat agaggtcaga taggtagtag tctcgggtgt atactagccg 300 ttccggatag cggggcggac atagaaatag acttagatag gttggtagga acggaagagg 360 aagccacgtc ctgtctggtg gaggcggtag gtagtaccgc agatgtcccc aggaggagag 420 tccgtcaaaa ggggcggttt gccatgcatg ccgtcaacgc agccaagctg cacttttgtg 480 gcgttccgaa acccactgaa gcgaatcgac tagcggtctc aaaatggctt gtccaatact 540 gcaaagagag acatgtcgta gacagccaca tcagaacgat agtcaatacg gctcttccaa 600 gagtgtttac gcctgacgcg gaagacattc aggttgtgct ggatttgcac agtgtcagag 660 cacacaacca ccgcaacgcg ctagccgaag caggcaaagt gcggaagtgg tgggtcaacc 720 tcgcgatgca tcccatgaca gggaggtcgt ggtctagggc ttggaggcga ttatgccgcc 780 tgcctgacga ccaggcgatc tcttttgtcc gctaggggtg cttgcgggag ctggtcggga 840 gggagactca aatctccagg ggtgaaaacc cggccatgcg cgtgttcccg ttagcaaatc 900 ccccgaaggt tcgacgcatc ttccatatct gtggaatggg caatggttta gactttggag 960 tccacaacaa ctcactcaac aatttgagaa gagggttaat ggagagagtc ttttacgttg 1020 aagatgcgca gaagcaattg aaaccagccc cccaaccgat cccagggata ttcgggaagt 1080 tgagtgggat tcggaaacga ttggtcaggt tggccggaaa tcatacccct gtacctcggg 1140 agaaataccc gtcgttctac aagggcagga gggccaccat ttaccaaaaa gctctggatt 1200 ctctacatga cagaccggtg tcccggaagg acgctgaact caaaacattc gtgaaggcag 1260 aaaagatcaa tttcacggcg aagaaagacc cggctccacg ggttatccag ccgagagacc 1320 cacgatataa cattgaggtt gggaaatact tgaaaccgta cgagcaccat ttatatcggg 1380 caattgacgc tatgtggggt gggcccactg tgctgaaagg atacgatgtg ggggagcttg 1440 gaaacattat gagtaacacc tgggataaat tccggaaaac gtgtgcgata ggatttgaca 1500 tgaagagatt cgaccaacac gtatccgtgg acgccctacg atgggaacac agtgtataca 1560 acgcgggctt taactgtccc gagttggcac aactgctaac ttggcagttg accaacaagg 1620 gagttggaag agcctccgat ggctttatca aataccaagt tgatggttgt cgcatgtccg 1680 gggacgttaa cacagctttg ggtaactgcc tcttggcttg ctctatcacc aagtacttaa 1740 tgaagggaat caaatgcaaa ttaatcaaca atggagacga ttgtgtgctg ttcttcgaag 1800 ctgaggaagt tgacagggtg cgcgaaaggc tgcaccattg gatcgacttt gggtttcaat 1860 gcatagcaga agaaccacaa tacgagttgg agaaagttga gttttgccag atgtccccta 1920 tttttgatgg tgaagggtgg gtcatggtta gaaacccccg tgtgagcctt tccaaggata 1980 gctacagcac cacacaatgg gcgaatgaga aagatgcagc cagatggttg gcggctatcg 2040 gagagtgtgg cttggctatt gcaggtggcg taccagtgtt acaatcatat tattcttgcc 2100 tgaagaggaa ttttggaccc ctggccgggg actacaagaa gaagatgcaa gatgtttcct 2160 ttgatagtgg attctacagg ttatccaaaa acgggatgag gggcagcaaa aatgtgtccc 2220 aagatgctag gttcagcttt taccgggggt tcggctacac tccagacgag caggaagcgc 2280 ttgaggaata ctacgacaac ctcgaactgc tctgtgagtg ggaccccacg ggatataaag 2340 aagaacttag tgatagatgg atcctgaacg aattccctac aactctctaa gcgacagcga 2400 cgcaccagga aaacggaaga aaggcggaga gaaaagtgcg aagaagagat tggtagctag 2460 ccacgcggct agctctgctt taaacaagaa aagagatgaa ggttctgcta gccacggggg 2520 tacttgggtt attgttgctg ataaagtgga agtctcaatc aacttcaact tctaatcagg 2580 tttgccagtg cccgacgtcc ccgtgggtaa tatatgcttt ctacaactct ctctcactgg 2640 tcctcctact ctgtcatctg attcctgaaa tcaaaccgat tcacacatcc tacaacacac 2700 acgactcatc gaagcagcaa cacataagca tcaacactgg aaatggaaaa tgatcctaga 2760 gtccgaaagt tcgcatccga gggcgcccaa tgggcgataa agtggcagaa gaagggctgg 2820 tcatccctaa ccagcagaca gaaacagacc gcccgcgcag cgatggggat caagctctcc 2880 cctgtggcgc aacctgtgca gaaagtgact cgactgagtg ctccggtggc tctcgcctac 2940 cgcgaggttt ccacccagcc tcgggtttct actgccaggg acggcataac cagaagcggt 3000 tctgaactga tcacaaccct gaagaagaac actgacactg aacctaagta caccacagct 3060 gtgcttaacc caagcgaacc cggaacattc aaccaactca tcaaggaggc ggcccagtat 3120 gaaaaatacc gattcacgtc actcagattt aggtactctc ccatgagccc ttcaaccacc 3180 gggggcaagg tggctctggc attcgaccga gacgctgcca aacctccgcc caacgacctc 3240 gcttccctct acaacataga gggttgtgta tctagcgtgc cctggacagg gtttattttg 3300 accgtcccaa cagattctac tgaccgcttt gtggcggatg gtatcagcga tccaaagctt 3360 gtcaatttcg gcaagctcat catggccacc tatggccaag gagccaatga tgccgcccaa 3420 ctcggtgaag tgcgagtcga gtacaccgtg cagctcaaga acagaactgg ctcaaccagc 3480 gacgcccaga ttggggactt cgcgggtgtt aaggacggac ccaggttggt ctcgtggtcc 3540 aagaccaagg gaacagctgg gtgggagcac gattgtcatt ttctcggaac cggaaacttc 3600 tcgttgacac tgttctacga gaaggcgccc gtttcggggc tagaaaacgc agacgcctct 3660 gacttctcgg tcctgggaga agccgcagca ggtagtgtcc aatgggctgg agtgaaggta 3720 gcagaaaggg gacaaagcgt gaaaatggtc acaactgagg agcagccaag gggaaaatgg 3780 caagcactca ggatttagta cggtaatagt gtagtcttct catcttagta gttagctctc 3840 tcttatatta agaaaagaaa acaaaaaccc ccaggtcgct ttattttgac ctgtgttagg 3900 gaccaaaaac ggtggcagca ctgtctagct gcgggcatta gactggaaaa ctaatgctct 3960 ttgggtaacc actaaaatcc cgaaagggtg ggctgtggtg accttccaag ccaaaagata 4020 gcctctcccc tcgcgcgggg ggggggcctg ccc 4053 //