ID AY310445; SV 1; linear; genomic RNA; STD; VRL; 3912 BP. XX AC AY310445; XX DT 12-MAR-2006 (Rel. 87, Created) DT 12-MAR-2006 (Rel. 87, Last updated, Version 1) XX DE Raspberry ringspot virus grapevine strain RNA 2 complete sequence. XX KW . XX OS Raspberry ringspot virus OC Viruses; Riboviria; Picornavirales; Secoviridae; Comovirinae; Nepovirus. XX RN [1] RP 1-3912 RX DOI; 10.1007/s00705-005-0665-z. RX PUBMED; 16328136. RA Wetzel T., Ebel R., Moury B., Le Gall O., Endisch S., Reustle G.M., RA Krczal G.; RT "Sequence analysis of grapevine isolates of Raspberry ringspot nepovirus"; RL Arch. Virol. 151(3):599-606(2006). XX RN [2] RP 1-3912 RA Ebel R., Schnabel A., Reustle G.M., Krczal G., Wetzel T.; RT ; RL Submitted (27-MAY-2003) to the INSDC. RL Staatliche Lehr- und Forschungsanstalt, Centrum Gruene Gentechnik, RL Breitenweg 71, Neustadt an der Weinstrasse D-67435, Germany XX DR MD5; 47db76ee0916c85bec697304a676f9b1. DR EuropePMC; PMC3314827; 22218961. XX FH Key Location/Qualifiers FH FT source 1..3912 FT /organism="Raspberry ringspot virus" FT /segment="RNA 2" FT /strain="grapevine" FT /mol_type="genomic RNA" FT /db_xref="taxon:12809" FT CDS 197..3520 FT /codon_start=1 FT /product="polyprotein 2" FT /db_xref="GOA:Q24M89" FT /db_xref="InterPro:IPR005054" FT /db_xref="InterPro:IPR005305" FT /db_xref="InterPro:IPR005306" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:Q24M89" FT /protein_id="AAQ77239.1" FT /translation="MSQFWGEFPEAVINTFQRLQIALIGDIKRCPLSSPLFPELSKLDA FT HSQHHLLASFELPKFGGVTPSVMEQLHDAESELAEAKARLLRERLHAVANKENIPYLGD FT CMFYDAPGISQEELLQAAFLEAPTPEWESERIRPLWPKDEWFRDAQQGPYPEDYGSIPL FT GDIDTLCLAFDALVEEHWMPIYLMISTFATFQQYGTHPLLLECVQSAGSLIPACMMTDH FT HLQPTGDRQADKEERQDYADSQDSIQSMGDFWKEFYSKDSGKKIPDSHKSRLANDPNKV FT GFTKSALFHKQPLAHSLAQTWANFRGTQDKADLVKVTMDMNIEKYTVRLPDAVRTTAGP FT LYIEWINLPRMSENSARKLAEAGWNNADICGVDLAVKSHVAVGTPVRVIISLVDGACSD FT MPTATMCAFEVNLATQNNRSLNLPLLSLPFSQLLADLHDFQHRVKIACQFRDPEGFNVG FT TPMLSFSSLEFSELKQTAFERKSLLRDSWSEIEKRACHGGGRCIASQGIVQTWEKEINP FT PLKEYAPLVLPPVPQPRRNFIGQQSGEVVKPWLPKSRSMRFKSPTDLWSRPSVDGGSTS FT TVVTGTEHLRCDDVPGCAYEVDPLHLLYYASVDVPKDTLEGTRLARIDLRAKAQEMDSA FT VWRQWVKEGCMKPRIKIRISAATSCFSGVVLGMCLDAYRRIPIMRDKGFSANLVTGLPN FT TMWATRTQAELEWDLDLSQECGHSFYALSDTLGYMDFLIYVLRGNEMTAVADWSFYVAF FT YVDWSQESFTAMLAPTLKWPPTPGIISTFKEVRGPYAFSLDGTKARLDFGFLPGVSLVE FT GSETVRTCPRVLASFYRSWTGKLRISIEEVSSIFLTGSYMVGVAWNAGDDLGGITTRKH FT WMVKSGEIFDLDLYGPHGEYPTFAGKANGTPYIVVQKVGGIVGPKDSTGSFGFFLHIHG FT MTGIYKNPTLHSPERGQMHAWFRMNNIQVDNLSFSIPGRIEDMSALAGSYDITNYVNPA FT SLLFSVTGLHGGTIRLHVTWCPKTNLGESKGTLKYMQYLYHTNTVSYYGDQATRGLIDP FT DGFKCELRCGDFFGATNIAMVGDVERLAIHSANATFISEIRVSFEILEMSFYGKTIKVS FT " XX SQ Sequence 3912 BP; 937 A; 880 C; 945 G; 1150 T; 0 other; ttgtctttaa tctcagtccc attattgtag ctctcttatc tcaatctctg aacctctctc 60 ttattgtgat atctcagcaa catccctgca ctttgtgaca acgtaaagtt ttccggaagt 120 tttcttttaa tcgttcaata aatttccaat tttctattct tccctatttc tcttatagtt 180 gtgtattact ggcacaatgt cccagttctg gggagaattc cccgaggctg ttattaacac 240 ctttcagcgc ctgcaaatag cgctgattgg tgacattaag agatgtcccc tctcttcccc 300 cctcttcccc gagctttcca agctcgatgc ccactcccag catcatctgc tggcttcctt 360 cgaacttcca aagttcggag gagttactcc tagcgtcatg gaacagctcc atgatgcgga 420 gtccgaattg gctgaggcca aggcaagact ccttcgcgaa cggctacacg cggtagccaa 480 caaagaaaac atcccctatc ttggggattg tatgttctat gatgcacctg gcatcagtca 540 ggaggagctg cttcaggcag cttttcttga agctcccaca cctgagtggg aaagtgaacg 600 aattaggcct ttgtggccta aggacgaatg gtttagggac gcccaacaag gtccctaccc 660 tgaggattat ggtagtattc ccctgggtga tatagacaca ctgtgtctgg cttttgatgc 720 tcttgtggag gaacattgga tgcctatcta cctgatgata tccacgtttg ccacgtttca 780 gcagtatggt actcacccac tattgctgga atgtgtgcaa tctgcaggta gtctgattcc 840 tgcgtgcatg atgactgacc atcacctaca accaacgggt gataggcagg ccgacaagga 900 agagcggcag gattatgcgg acagccagga ctctattcag agcatgggtg atttctggaa 960 ggaattctat tcaaaggatt ctggaaagaa aatccctgac tcccacaagt caaggctggc 1020 taatgatccc aacaaagttg gttttacgaa gagtgcgctt ttccataagc agcccctggc 1080 gcattcatta gctcaaactt gggctaactt taggggtacc caggataagg cggacctggt 1140 caaagtgacc atggacatga atattgagaa atatactgtc cgtcttcccg atgcagttcg 1200 tactacggca ggaccactat acattgagtg gattaatctg ccacgaatgt ctgaaaattc 1260 tgcacgtaaa ctagcagaag ctgggtggaa caatgcagat atttgtgggg tggatcttgc 1320 cgtgaagtcg catgttgcag ttggcacgcc agtccgtgtt atcatctctt tggtagatgg 1380 tgcatgctct gatatgccca cggcaacgat gtgcgctttt gaggtgaact tggcaacaca 1440 gaacaaccgg tcactaaatc ttccgctgct tagtttaccc ttctcacaac tgctcgccga 1500 tttgcatgat ttccaacatc gtgtcaagat cgcttgccaa tttcgggacc cggaaggatt 1560 caatgtgggt actcccatgt tgagtttttc ctcgctcgaa ttttctgagc tgaagcaaac 1620 cgctttcgag cggaaatctt tactcagaga ttcctggtct gaaatagaaa agcgtgcttg 1680 ccatggtgga ggacgttgta tcgcctccca gggtattgtg cagacctggg agaaggagat 1740 taatcctcct ttaaaagaat atgcaccctt ggttttacct cccgttcccc agcccagaag 1800 gaactttatt ggccaacaat ctggggaggt tgtcaaacca tggcttccaa agtcccgctc 1860 catgcgattt aaatcgccca ctgatttatg gagcaggccc tctgtagatg ggggttcaac 1920 atctaccgtg gttacaggaa ctgaacactt gcgttgcgat gatgtaccag gttgtgcgta 1980 tgaggtcgat cctctgcacc tcctatatta tgcaagtgtt gacgttccta aagatactct 2040 tgaaggcact aggcttgcgc gtattgattt gcgcgcaaag gctcaggaaa tggatagtgc 2100 cgtgtggcgc cagtgggtta aagaagggtg tatgaagccg cgcattaaga tccgtatatc 2160 agcggctacc tcctgttttt ctggcgtagt tctaggaatg tgcctggatg cttatcgcag 2220 aatccctatc atgcgtgata aaggatttag cgccaatctt gtcacaggtc ttcctaatac 2280 tatgtgggcg acccgcacgc aggcggaact tgaatgggat cttgaccttt cacaggagtg 2340 tggccatagc ttctacgccc tatctgacac ccttgggtac atggattttt taatctacgt 2400 actcaggggt aatgaaatga cggcagtagc agactggtca ttttatgtgg ccttctatgt 2460 ggactggtcc caggagagtt ttactgcaat gcttgctcca acattgaagt ggcctcccac 2520 accgggaata atatccactt ttaaggaagt gcgaggacct tatgctttta gtcttgatgg 2580 taccaaagca cgccttgatt ttggtttttt acctggtgtt tcccttgttg aaggtagtga 2640 aaccgtgagg acctgtcctc gtgttctcgc tagcttttac cgttcatgga ctggcaaatt 2700 gaggatttcc atagaggaag tttcctctat tttcctcacc ggttcatata tggtaggggt 2760 tgcatggaat gctggggatg atcttggtgg aatcaccacc cggaaacatt ggatggtcaa 2820 atcaggggag atctttgatt tagatctgta tgggccccat ggagaatatc ccacctttgc 2880 aggtaaagca aatggtacac catatatcgt tgtgcagaag gttgggggta tcgttggtcc 2940 aaaggattct actggatctt ttggtttttt cctgcatatc catggcatga caggaattta 3000 caagaatccc actcttcaca gtccggagcg gggtcaaatg catgcatggt ttcgtatgaa 3060 taatatccag gtggacaatt tgtcctttag catacctggt aggattgagg atatgagtgc 3120 gctggcaggg agttatgaca tcacgaatta cgtaaaccct gccagccttt tgttttccgt 3180 cactggccta catggtggta ctatcaggtt gcatgtcacc tggtgtccca agaccaattt 3240 gggtgaatcc aaaggtactc ttaagtacat gcagtatttg tatcacacga atactgttag 3300 ttactatgga gatcaagcca cacgtggact catagatcct gatggattca aatgtgagtt 3360 acgctgtggc gatttctttg gtgcaaccaa tatagccatg gtaggtgatg ttgaacgatt 3420 ggctatccac tccgccaatg ccacttttat ttctgaaata cgtgtttcct ttgaaattct 3480 tgagatgagt ttctatggga aaactattaa ggtctcatga ggtggtactg attaccctat 3540 ggctccgggt taattgagcc aactaaagct gtgccatgtg agtttgtgtt ttacacatgg 3600 cccctacaag tctagacaac ttgtaggttc agcggtactg ttaagtgtct ttcttctggt 3660 ggtgacgttc cagagcagta tgacgagttt tccaatttat cagtaaattg gagccgattg 3720 cagagtcggt ggtgaaaggt gtgctacggc tagttccgta ggcataataa gccaaactat 3780 ctgttttaat gcttcgagtc atagttagat ttctttctgt agctccctct ttgaggttgt 3840 gcctttagca agcacacaaa aatatgcatt tgtttttgtt cttaagcttc cttagtgttg 3900 ttctgtccga ac 3912 //