ID AY310444; SV 1; linear; genomic RNA; STD; VRL; 7935 BP. XX AC AY310444; XX DT 12-MAR-2006 (Rel. 87, Created) DT 12-MAR-2006 (Rel. 87, Last updated, Version 1) XX DE Raspberry ringspot virus grapevine strain RNA 1 complete sequence. XX KW . XX OS Raspberry ringspot virus OC Viruses; Riboviria; Picornavirales; Secoviridae; Comovirinae; Nepovirus. XX RN [1] RP 1-7935 RX DOI; 10.1007/s00705-005-0665-z. RX PUBMED; 16328136. RA Wetzel T., Ebel R., Moury B., Le Gall O., Endisch S., Reustle G.M., RA Krczal G.; RT "Sequence analysis of grapevine isolates of Raspberry ringspot nepovirus"; RL Arch. Virol. 151(3):599-606(2006). XX RN [2] RP 1-7935 RA Ebel R., Schnabel A., Reustle G.M., Krczal G., Wetzel T.; RT ; RL Submitted (27-MAY-2003) to the INSDC. RL Staatliche Lehr- und Forschungsanstalt, Centrum Gruene Gentechnik, RL Breitenweg 71, Neustadt an der Weinstrasse D-67435, Germany XX DR MD5; 28fada4875543fe7df7f4003503cb4cd. DR EuropePMC; PMC3314827; 22218961. XX FH Key Location/Qualifiers FH FT source 1..7935 FT /organism="Raspberry ringspot virus" FT /segment="RNA 1" FT /strain="grapevine" FT /mol_type="genomic RNA" FT /db_xref="taxon:12809" FT CDS 146..7246 FT /codon_start=1 FT /product="polyprotein 1" FT /db_xref="GOA:Q24M90" FT /db_xref="InterPro:IPR000605" FT /db_xref="InterPro:IPR001205" FT /db_xref="InterPro:IPR004004" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR014759" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:Q24M90" FT /protein_id="AAQ77238.1" FT /translation="MGWTCPSGACMYSRSTWSNRELKEDGLSFTKRCPGAMCGALLVRS FT EPVHVPKATVVPQTPLPTVQPKRTVVASTPLRKQDCVVVVEVGSPALLSLEYPALAGRA FT RSSGEFDSALLARRPSNGGVTRAPAGWYKPRAVRSQPTKRAVPAWVSEARHLLKGALNG FT SNAFGPRYCRDRFPKARLVWALGMLAKRAPPSIAIGRQLKKSFLALKARIASALAKKQS FT ARAARRQEACRKIRLALWQARGVAALERQQARQTSGAGLYSVHLCTKRASSPVVEVPKR FT HKKKVVSSPSPVFVQEFPEDLVGPDFWETSGLLDCAAPLQRREIPIPNYGIDECQEQPG FT RFVLGPKSPSVSLGDNKPRLPTCPLEAVNLLWASNLFEDWELDIIGQMVSDGLLTSQAF FT LDGCTLVSYYGQEQMVDSFHCLLQDSVPVEVAEALAVDVQALDFDAVFGCGISDFLRGT FT RDAIKGWIMDPVIAKSTTWCNTIIDTVRALFDQYFAPFHKIIDGMSYVNSLWAKCKEWA FT QSVLKNGSQLFSVMWETHCVSFVIIITCACTLLVENVLKELRLISRVGTLTGCVVSGAL FT GILGCGMILTKCEDLAVVSASIRAFLGVLLCPPTMEKVDLNQSLIPEDVQAVSWTGVDR FT VLGALNAVGSGLTGFNSDTIIYWGRFAQSFDGMRRGKDAVCALAAYLFEKLGTVYNRVT FT GKEAAFFHELSSLVSIDVQGWLNSSRRVMAESIAFTKSDAVAFATVERLINDGETIQLT FT AASAPKSHSMQFGQILAERLRELRTLRNDMAHAGSFEGRRCVPFWLYIYGPPGVGKTTT FT MHEFSQALLTAFEFPSDSLTSKSATDKYWSLYRRQALVQIDDLGAISESGMEQEMMNIV FT SSATYNPTMAVANEKTTLFDSKFIVSTSNGYSAGTDAKIHDRKAFNRRRRVVIKTRGKA FT GVAFNPHDSTAAAEFCVIERDDRTETPIWVQSGEAPEDKEMYWMDFRTTVAYVIEQARI FT HHNAEDIEQAQYSMKHSRTRQLYQVCENYIGEVKMSVANFVPGDMLGAWNLEAKGRFLY FT SCVDGRVYSYDSEQKAYDEGPVDKTLDFEQICLEKLSYTLQADIQGGPKSATAGIFLRS FT MVSGECAVEGVDKLNKSASREHLVFFKNLSLADRVYLRLVQKRILQLAMVGDPLGVRSY FT AVMMEGFQSSYNYVKENGGRLLLILCSCMLLGVACYAFFNALAILIGGTSVAAGAAAMV FT DIGACGSTSTYASDYGAKMGRRNMPHRSREIPAVWSEEAGYDEKWQLCGLLETSRSDMP FT SVHVNLVPGNKIAITKHQALAIPEGSSVGLSVAGRSFRTFLWRASAITEYAESEICTYF FT DSRIPSLGKQAMKMYSDSDLDALNVKYFATRTLHFRLVEDRVEKRHWDADACVLSTPKG FT IVSTVNGVKYRQEIPTSITYKRESVKHDCGALVFTEVRGKPKAVGMLVGTLGGITYVCK FT LPPIEVDAFACVPDIRGFNLEAGVSTLGYSKLGWLDRRHQPHNSERTEFVPIPEKYHMD FT DVPCKIPAVLSSKDPRLADVPHCEGYEPYKQGMEKFAHPMQEIDEQLLATVCDEIAQEF FT HEVGVRGRMVSMDEAINGHRKYDIPSFYVEGASTRELNELRTSCGTEVWHCDPGSDIEF FT EYPRIVPGPKESKWKCESTCVGCTVRGSGTEAIANFVKTRSPCCEEIFFDGLDLTTSEG FT YPLFLDRPAGAKGKERFFEGSENQKFLIPECPLDVQLRKGIEETHLGTPQLIVKESAKD FT ELLKEGKVLPSEGMPGTRLFSICPAWYNIVVRQHFVYVAESVRKRRRTLSSQVGIVVGS FT REWDDLAARLRSKKNDKMYCCDYSKFDGLMTPQIVHAITGIYERMFSGKDGMSQFRQNL FT LMGICNRISICGSQVYRVEAGMPSGFALTVDFNSIFNEILVRCAYRSLVPDIERPFFSN FT NVVLIVYGDDNVLGIHPNIESVFNGNTIKAYMKEELGIKITDGADKLSPVIDARPLEQC FT EFLKRTWRKDRQYGLYRAPLVETSIFSCLRYVRLQNYDWQAPLLQNVQGSLYEASLHGP FT EMHDRIYKHFAMHFPKWVEEHELYTYEQCRTRFIAAKNGDFNFHPASAQMGHVFSQQTE FT IQELSQPQNPMRCFKLHEKIHVCGPGHNESDCFYVDVRVKGKITKGKGFHCEPVYSAGS FT GQLGTVKWASSFRSSLACPLRDSAVEAFKRGECIYFRDNGELINAWLAAINFGMSINAD FT GLDGLLQVYRNQGPTHLDDLSFYFEGGVVGVPAPAHLMVYGTDIPMLNRLCPKTILESA FT PPPGRSDNVSERGQVQTFLHMSPKPCFITIKGSRKVCFGLRCKETCRGHISCIDVVRNS FT VTNHKAAMLDVLRKGCFNIQ" XX SQ Sequence 7935 BP; 1874 A; 1659 C; 2119 G; 2283 T; 0 other; tttgtcttta atctcagtct tattattgta gctctcctat ctctacttga atcttactct 60 tttgtgatat ttcttcaatc tttctgtgat tcgcgacaaa gtaaagtttg tcagttttct 120 tttaattgtt caaaaactgg taacaatggg ttggacctgc ccctctgggg cttgtatgta 180 ctcccgctcc acttggagca atcgggagtt gaaggaagat ggcctgtcct tcactaagcg 240 ctgtcctggt gccatgtgtg gtgccttact tgtcaggtcg gaacccgttc acgttccaaa 300 ggctactgtg gtgcctcaaa ccccacttcc tactgtccaa cccaagagga cagtggtagc 360 ctcgacaccc ctgcgaaagc aggattgtgt cgttgtagta gaggtagggt ccccagccct 420 cctctcgctc gaataccctg ctcttgcagg aagggctcgc tctagtggcg agtttgattc 480 cgcgctgctc gcgcgaaggc cctctaacgg aggcgttact agagcacccg ccggctggta 540 taagccgagg gctgtgcgct cacagcctac caagcgggca gttcccgctt gggtttctga 600 ggcccgccac cttctaaagg gggccttgaa tggatcaaat gcgtttggtc cacgctactg 660 ccgggataga ttcccgaagg cccgccttgt gtgggcactt ggcatgctgg ctaagcgtgc 720 ccctccttca attgccattg gaaggcaatt gaagaagagt ttcctggcac taaaagccag 780 gattgccagt gcactggcaa agaaacaaag tgcacgtgct gcacgcaggc aagaagcctg 840 cagaaaaatc cgcctagctt tatggcaggc gaggggtgtt gctgcccttg aacggcaaca 900 agcgcgccag acctctgggg ctggtttgta ttccgtgcac ttgtgtacga agagggcttc 960 gagccctgtt gtggaagtgc ccaagaggca caagaaaaag gtggtttctt caccttctcc 1020 tgtattcgta caggagtttc ctgaggacct tgttggtcct gatttctggg agacatctgg 1080 tcttctagac tgtgctgctc ccctacagcg aagggagatt ccaattccaa attatgggat 1140 tgatgaatgc caggagcagc ctggtaggtt tgtcttggga cccaagagtc cctccgtgtc 1200 acttggcgac aacaagccaa gactgcccac atgccctctg gaggcagtga atttgctttg 1260 ggcttctaat ctttttgagg attgggaact cgatattatt gggcagatgg tatcggatgg 1320 tttgttgacc tcacaagcct tcctagatgg ttgtaccctg gtctcttatt atggccagga 1380 gcagatggtg gattcttttc actgtctttt gcaggattct gttcctgttg aggttgctga 1440 ggcgctggct gttgatgtgc aagcgctgga ttttgacgcc gtcttcggat gtggtatttc 1500 ggatttcctt cggggaacac gcgatgctat aaaagggtgg attatggatc cagtgattgc 1560 caagtcgaca acttggtgta acaccatcat tgatacggtg cgtgctttgt ttgatcagta 1620 ttttgcaccg ttccacaaaa tcattgatgg catgtcctat gttaattcac tgtgggccaa 1680 atgtaaagag tgggctcaat cagtgctaaa gaatggttcc caactgttct ctgtcatgtg 1740 ggaaacgcat tgtgtgagtt ttgttattat cattacttgc gcatgcaccc tgttggtaga 1800 aaatgtgttg aaggagttgc gactgatatc acgcgttggt actcttaccg gctgtgttgt 1860 atctggcgct cttgggatat taggttgtgg catgattctc actaagtgtg aggaccttgc 1920 tgtagtgtct gctagtatcc gagcctttct tggtgtgctg ttatgtcctc caactatgga 1980 gaaagtggat ttgaaccagt ccctgatccc tgaagatgtt caggccgtga gttggactgg 2040 tgttgatagg gtgcttggag cactaaatgc cgttggttca gggttgacag gcttcaactc 2100 agacaccata atatattggg gtagatttgc ccaatctttt gacggtatga gacgagggaa 2160 ggatgctgtg tgcgctctcg cagcatatct ttttgaaaag ctgggcacgg tttacaatcg 2220 tgtgacaggt aaggaggcgg cttttttcca tgagctatcc tcacttgttt ccattgatgt 2280 ccagggatgg ttgaattcct cacgtagagt gatggcggag tctatagctt ttactaagtc 2340 tgatgctgtt gcttttgcca ctgtcgagag gttgataaat gatggtgaga ccattcaact 2400 gaccgctgct tctgctccaa aatctcactc tatgcagttt ggtcagatac tcgctgagcg 2460 cttgagggaa ctccgtactt tgcggaatga tatggctcat gctggttctt tcgaagggcg 2520 taggtgtgta cctttttggt tatatatcta cggacctccg ggagtgggga aaaccaccac 2580 tatgcatgag ttttcacagg ctttgctgac agcctttgag ttcccttctg attccttaac 2640 atccaaaagt gccactgata aatactggtc gctctatcga cgccaagccc tggtgcaaat 2700 agacgatctt ggtgctattt cagaaagtgg tatggaacag gagatgatga atatcgtttc 2760 ctccgctaca tataatccta ctatggcggt tgctaatgag aagacgacgc ttttcgatag 2820 caagttcatt gtttctacgt cgaatggtta ctctgcgggc actgatgcta aaatacatga 2880 tcggaaggca tttaatcggc gccgcagagt ggttataaaa acccgtggaa aggcgggagt 2940 agcctttaat ccccatgata gcaccgcagc tgctgagttc tgcgtgattg agagggatga 3000 taggactgag acacccattt gggtgcagag tggtgaggcc ccggaagaca aggagatgta 3060 ttggatggac ttccgcacaa cagtggccta tgtcatagaa caggcgcgaa tccatcacaa 3120 tgctgaggac attgagcaag cccaatattc gatgaaacac agtcgtacaa ggcaattgta 3180 ccaagtgtgt gagaactaca ttggggaagt gaagatgtct gttgctaatt ttgtgcctgg 3240 ggatatgttg ggagcttgga atttggaagc taaaggcagg ttcttgtatt catgtgttga 3300 tggtcgggtt tattcttatg attccgagca gaaggcttat gatgaggggc cggtcgataa 3360 aactctagat tttgagcaga tttgtttgga gaagctctcc tacaccctac aagctgatat 3420 ccagggtggt cctaagtccg caactgctgg tatattcctg cggtcaatgg tctcgggaga 3480 gtgcgctgtc gagggagtgg ataagttaaa caagagtgct tctcgtgagc atcttgtttt 3540 ttttaaaaac ttgtctctgg ctgatagagt gtatctccgc ctcgtgcaga agcgaatttt 3600 gcagcttgcg atggttggtg atcctctggg agtgaggagt tatgcggtaa tgatggaagg 3660 attccaaagt tcttacaact atgttaagga gaatggaggg agacttttat tgatattgtg 3720 tagctgtatg ttgttgggtg ttgcctgcta tgcttttttc aatgctttag caatactcat 3780 cggagggact tcagtggctg ctggggcagc tgccatggtt gatattgggg cttgcggtag 3840 tacttctacc tatgcatcag attacggcgc caagatgggc cgtaggaaca tgccgcatcg 3900 ctccagagag attcctgcag tctggtctga agaggcggga tacgatgaga aatggcaact 3960 gtgcggtctt ctggagacca gcagaagtga tatgccctcc gtacatgtga atcttgtacc 4020 gggtaataaa attgccataa ctaaacatca ggccctggcc attccagaag gctcttctgt 4080 gggcttgagt gtggcaggaa gaagttttag aacattccta tggcgagctt ctgcgataac 4140 ggaatatgct gagagtgaaa tctgtaccta ctttgatagt cgaatccctt cattggggaa 4200 acaagctatg aagatgtatt cagattctga tcttgatgcg ttgaacgtta aatattttgc 4260 gacccggaca ctacatttta gactggtgga ggatcgggtc gaaaagcgcc attgggatgc 4320 ggatgcatgc gttctttcaa ccccgaaggg cattgtttct actgttaacg gggtgaagta 4380 tcggcaagag atacccacat ctatcacgta caagcgtgag agtgtgaagc acgactgcgg 4440 tgcactggtt tttacagaag tgcgcggcaa gccaaaagct gtgggtatgt tggtgggcac 4500 tctaggggga ataacatatg tgtgtaaatt gcctcccatt gaggttgatg cttttgcatg 4560 tgttcccgac atccgaggtt ttaatcttga agcgggagtt tcgactcttg gctattctaa 4620 actcgggtgg ctagataggc ggcatcagcc gcacaacagc gagagaactg agtttgtgcc 4680 cataccagaa aaataccaca tggacgatgt tccatgtaaa ataccggcag tgctcagttc 4740 taaggatcca cggttggcag acgtaccgca ttgtgagggt tacgaacctt acaaacaggg 4800 catggaaaag ttcgctcatc ctatgcaaga gatagatgag caattgttgg ccaccgtttg 4860 cgatgaaatc gcccaggaat tccatgaggt gggtgtacga gggaggatgg tctctatgga 4920 tgaggctatc aatggtcacc gcaagtatga tatcccctcg ttttacgttg aaggagccag 4980 taccagagaa cttaatgagt tgcggacctc ttgtggtact gaagtttggc actgtgatcc 5040 ggggagtgac atcgaatttg aatatccgcg cattgtccct ggtcccaaag aatccaaatg 5100 gaagtgtgag agtacatgcg ttggttgtac tgtcagaggc agtggtactg aggccattgc 5160 aaattttgtc aagacgcgtt ctccatgttg tgaagagatt ttctttgatg gtcttgattt 5220 aaccacttcc gagggctacc cccttttctt ggatcgtccg gcaggggcga aaggaaaaga 5280 aaggtttttc gagggtagcg aaaatcaaaa gttcctcata ccagagtgcc cgcttgatgt 5340 gcagctgcga aagggtattg aggagactca tcttggcaca ccacagctca tcgtcaagga 5400 gagtgccaag gatgagttac ttaaggaagg gaaggttcta ccttctgagg ggatgccggg 5460 aacacggttg ttctccatct gtccggcctg gtataatatc gttgtgcgtc aacactttgt 5520 atatgttgct gagagtgtgc gcaaacgaag acgtactttg tctagtcagg tgggaatcgt 5580 tgttggttct cgagagtggg atgatcttgc agcacgactt aggtccaaga agaatgataa 5640 gatgtactgc tgcgattatt ccaagtttga tgggctgatg actccccaga ttgttcatgc 5700 tatcactggc atttatgaaa gaatgttcag tggtaaagat gggatgagtc aattccggca 5760 gaacctattg atgggtattt gcaatcgtat ctccatctgt ggttcacaag tctatagagt 5820 tgaagctggt atgccctctg ggtttgcctt gactgttgat ttcaactcta tcttcaatga 5880 gatattggtt aggtgtgctt atcgttccct tgtgcctgac attgaaaggc ccttcttttc 5940 caacaatgtg gtcttaattg tgtatggcga tgataatgtt ttgggtattc acccaaacat 6000 tgagtctgtt tttaatggca acacaattaa ggcatacatg aaggaggagt tggggattaa 6060 aattactgat ggtgccgata agctcagccc tgtgatagat gctcgtcccc tcgagcaatg 6120 cgaatttctg aagcgtacct ggaggaaaga tcgacagtat ggcttatatc gggctccact 6180 tgtggagacc agtatatttt catgcttgcg ttatgtacgc cttcaaaatt atgactggca 6240 ggctcctctg ttgcagaatg tgcagggaag tctttatgag gccagtttac atggtccgga 6300 aatgcacgat cgtatttaca aacattttgc aatgcatttc ccaaaatggg tggaggagca 6360 tgaattgtac acttatgaac agtgtcgcac acgattcatt gctgctaaga atggagattt 6420 caatttccac ccggcctcag cgcagatggg ccacgtcttc tcccagcaga ctgagattca 6480 ggagttgtct cagcctcaaa atccaatgag gtgctttaaa ctccatgaga aaatccacgt 6540 ttgtggtccc gggcacaatg aatcagattg cttttatgtc gatgttcggg taaaagggaa 6600 aattaccaag ggaaagggct tccactgtga acctgtgtat tccgcaggct ctggccaact 6660 tggtactgtt aagtgggcat cctctttccg ctcctcacta gcatgtcctt tgagggactc 6720 tgctgttgag gcctttaagc ggggagagtg tatatacttc agagacaatg gtgagttaat 6780 caatgcttgg ttagccgcta ttaactttgg tatgtccatt aatgcagatg ggttggatgg 6840 ccttctccag gtctatcgca accaagggcc aacacatctt gatgatttga gtttttactt 6900 tgaaggtggt gttgttggcg ttccagctcc tgcacatcta atggtctatg gcaccgatat 6960 cccgatgctc aatcgtttgt gtcccaagac tattcttgag agtgctcccc ctcctggacg 7020 ttcagacaac gtgagtgaac gtggccaagt ccagacattc ttgcacatga gtccaaaacc 7080 ttgttttata actatcaagg gctcgcgtaa ggtgtgcttt ggtttgcgtt gcaaagaaac 7140 atgtcggggt cacatttcgt gcattgatgt agtgcgcaat tctgtgacca accataaagc 7200 ggcgatgctg gacgtgctga ggaaaggctg ttttaatatc cagtaggggc tggattcaac 7260 taggcaagcc ggcagacttc gtgtgctgct accacggaat tacgtggttt tagctgacac 7320 cttactgtcg ttttattatt ttgttttaga ataataatcg gctagtttcg ccgagaagga 7380 aacgtgctgg agccacacca aaattctgat actatatgtt ccgtgaaatc ggtaatcaga 7440 taagtgccaa actctacgac gctttggggg cgtatgaagt agataccctg ttaataaagg 7500 gttccgtgaa atcggtatgt ggcaactctc tgaaactcag tctctaaggt gtgggagcaa 7560 cccctcggct ccgggttaac tgagccaact aaagctgtgc catgtgagtt tgtgttttac 7620 acatggcccc tacaagtcta gacaacttgt aggttcagcg gtactgttaa gtgtctttct 7680 tctggtggtg acgttccaga gcagtatgac gagttttcca atttatcagt aaattggagc 7740 cgattgcaga gtcggtggtg aaaggtgtgc tacggctagt tccgtaggca taataagcca 7800 aactatctgt tttaatgctt cgagtcatag ttagatttct ttctgtagct ccctctttga 7860 ggttgtgcct ttagcaagca cacaaaaata tgcatttgtt tttgttctta aacttcctta 7920 gtgttgttct gtcag 7935 //