ID AY303788; SV 1; linear; genomic RNA; STD; VRL; 3914 BP. XX AC AY303788; XX DT 11-NOV-2003 (Rel. 77, Created) DT 11-NOV-2003 (Rel. 77, Last updated, Version 1) XX DE Raspberry ringspot virus segment RNA2 complete sequence. XX KW . XX OS Raspberry ringspot virus OC Viruses; Riboviria; Picornavirales; Secoviridae; Comovirinae; Nepovirus. XX RN [1] RP 1-3914 RX DOI; 10.1016/j.virusres.2003.08.001. RX PUBMED; 14602206. RA Ebel R., Schnabel A., Reustle G.M., Krczal G., Wetzel T.; RT "Complete nucleotide sequence of an isolate of the nepovirus raspberry RT ringspot virus from grapevine"; RL Virus Res. 97(2):141-144(2003). XX RN [2] RP 1-3914 RA Ebel R., Schnabel A., Reustle G.M., Krczal G., Wetzel T.; RT ; RL Submitted (20-MAY-2003) to the INSDC. RL Staatliche Lehr- und Forschungsanstalt, Centrum Gruene Gentechnik, RL Breitenweg 71, Neustadt an der Weinstrasse D-67435, Germany XX DR MD5; 34d0ae83b51e92141fd24a3d31ad1f68. DR EuropePMC; PMC3314827; 22218961. XX FH Key Location/Qualifiers FH FT source 1..3914 FT /organism="Raspberry ringspot virus" FT /segment="RNA2" FT /host="grapevine" FT /strain="cherry" FT /mol_type="genomic RNA" FT /db_xref="taxon:12809" FT CDS 204..3524 FT /codon_start=1 FT /product="polyprotein 2" FT /db_xref="GOA:Q6W8W3" FT /db_xref="InterPro:IPR005054" FT /db_xref="InterPro:IPR005305" FT /db_xref="InterPro:IPR005306" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/Swiss-Prot:Q6W8W3" FT /protein_id="AAQ73823.1" FT /translation="MSQFWGEFPEAVINTFQRLQIALIGDIKKCPLSSPLFPELSKLDA FT HSQHHLLASFELPRFGGVTPGVMEQLHDAESELAEARARLLRERLHAVANKENIPYLGD FT CMYYDAPGINQEELLQAAFLEAPTPEWESGRIRPLWPKDDWFRDAKQGPYPEDYGDIPL FT GDFDNLYRAFDALVEEHWMSVYSTTLNPFALLRCGSEFVEECVVSAGSLIPACMMTDHH FT LQPTGDRQADKEERQDYADSQDSIQSMGDFWKEFYSKDSGKKIPDSHKSRLANDPNKVG FT FTKSALFHKQPLAHSLAQTWANFRGTQDKADLVKVTMDMNIEKYTVRLPDAVRTTAGPL FT YIEWINLPRMSENSARKLAEAGWNNADICGVDLAVKSHIAVGTPVRVIISLVDGACSDM FT PTATMCAFEVNLAAQNNRSLNLPLLSLPFSRLLADLHDFQHRVKIACQFRDPEGFNVGT FT PMLSFSSLEFSELKQTAFERNSLLRDSWSEIEKRACHGGGRCVASQGIVQTWEKEVNPP FT LKEYAPLVLPPVPQPKRNFIDQQSGEVVRPLIQKSRSMRFKSPSDLWSRPSVDGGSTFT FT LSPSRGSLRCDNVPGCAYEVDPLHLLYYELVNVPKDTLGGTLLTRIDVRAKAATFDSAV FT WRQWVRDGCLKPKIKMRITAATSCFSGIVLGACLDAYRRIPATTKTDFTASLVTGLPNI FT VWATRDTSEIEWDIDLAAVCGHTFFALEDTFGYMDFLVYVLRGNEVTAVADWSIYVSFH FT VDWTQESMSATLIPTFVWPPEPADISYFKEVWGPYHFTLDGTEAKESFSLMPGMAIPRG FT AQTVRTFPRVLAAHFRSWTGKVRMSIQEVSSIFLTGTYMVGVSWNATADLTDITTRKHW FT IVKSGEVFELDLYCPYGENPTFTGLVNGIPYIIVHRLGGIIGPKDSVGTFGFMIHLHGL FT TGVYKNPTLHSGDRSVGSAWFRVTNILDDNLVFNIPGRIEDMVAVAGKYEVTNYANPTS FT MLFSVTGLHGGFIRLHITWCPNTSLGESKGTLKYMQYLYHTTTENFFGDQATRGIIDQN FT GFTVDLACGDFFGATRVGLKGEVERLGIYSSNAKSIAEIRVSFEILSMKFYGSTIRVK" XX SQ Sequence 3914 BP; 901 A; 868 C; 961 G; 1184 T; 0 other; tttgtctcaa atctcaatct cattactgca gctctcatct ctctctgatt ctcattctct 60 gattctctct tgttgtggtt ttcaatatct cttgtggttt ggtacaaagt caagttttcc 120 ggaagtttcc ttttaattgt ttaataaact tccactttta tttctcctct tcttattctg 180 ttactgcgtt gtgccttggc acaatgtccc agttttgggg agaattcccc gaggctgtta 240 ttaacacctt tcagcgcctt caaatagcgc tgattggtga cataaagaaa tgtcccctct 300 cctcccctct cttccccgag ctttctaagc tcgatgctca ctcccagcat catttgctgg 360 cctccttcga actccccagg ttcggaggag ttactcctgg tgtcatggag caactccatg 420 atgcggagtc tgaactggct gaagccaggg ctagactcct tcgcgaacgg ctacacgcgg 480 tagccaataa ggagaacatc ccctatcttg gggattgtat gtattatgat gcgcctggca 540 tcaaccaaga ggagctgctt caggcagctt ttcttgaggc tcccacacct gagtgggaga 600 gtggtcgtat taggcctctc tggcctaaag atgattggtt tagggacgcc aagcaaggcc 660 cctacccaga ggattatggc gatattcctc tgggtgattt cgataatctg tatcgcgcgt 720 tcgatgctct tgtggaggag cattggatgt ctgtctactc caccacactc aatcctttcg 780 ctctactcag atgtggtagt gaatttgtgg aggagtgcgt tgtctctgcg ggtagtctga 840 ttcccgcttg tatgatgact gaccatcacc ttcagccaac gggtgatagg caagccgaca 900 aggaagagcg gcaggattat gcggacagtc aagactccat tcagagtatg ggtgatttct 960 ggaaagaatt ctattcgaag gattctggaa agaaaattcc cgactctcac aagtcgagat 1020 tggccaatga tcccaataaa gttggcttca caaagagtgc gctgttccat aaacagcccc 1080 tggcgcattc actggcccaa acgtgggcaa attttagggg cacacaagat aaggcggact 1140 tggtcaaggt gaccatggac atgaatattg agaaatatac agtccgcctt cctgacgcag 1200 tgcgtacgac agcgggtccg ttatatattg aatggatcaa cttaccacgc atgtccgaga 1260 attccgcacg taaactagct gaggctgggt ggaataatgc ggatatttgt ggcgtggatc 1320 tcgctgtcaa gtcacatata gctgttggca caccagtacg tgttatcatc tctctcgtag 1380 atggtgcgtg ttctgatatg cccacggcaa ctatgtgtgc ctttgaggtg aatttggcag 1440 cacagaacaa tcgatcactg aatcttccgc tgctgagttt acctttttcg cggctgctag 1500 ctgacttaca tgatttccaa catcgtgtta agattgcttg ccagtttcgg gaccctgagg 1560 gctttaacgt gggaactcct atgttgagct tttcttcgct tgaattttct gagctgaagc 1620 agaccgcatt tgagcggaat tctttgctca gggattcttg gtccgaaatt gaaaagcgtg 1680 cttgtcacgg tggtggccgt tgtgttgcgt cccagggtat cgtgcagacc tgggagaagg 1740 aggttaatcc tcccttgaaa gaatatgcac ccttggtctt gcctcctgtt ccccagccca 1800 aaagaaattt tatcgatcag caatctgggg aggttgtgcg gccattgatt cagaagtccc 1860 gctccatgcg atttaaatcg ccgtctgatt tatggagtag gccctctgtg gatgggggat 1920 caacattcac actgtcgccg tcaagaggct ctttacggtg cgataatgtg cctggttgtg 1980 cctatgaggt agatccattg cacttgttgt attatgaatt ggtcaatgta ccaaaagaca 2040 ctcttggcgg cactttgctg actcggatag atgtccgggc taaggctgca acctttgata 2100 gtgctgtatg gcgacaatgg gtgagagatg gttgtctcaa acccaaaatc aaaatgcgca 2160 ttaccgcagc tacttcgtgt ttctctggta ttgtgttagg tgcgtgtctt gacgcatatc 2220 ggagaattcc tgcaaccacg aagactgatt tcactgcgtc ccttgtgacg ggcctaccta 2280 acattgtgtg ggcgacacgc gatacttcag agatagaatg ggatatcgat cttgcggcag 2340 tgtgcggaca tacttttttt gcactggaag atacctttgg gtatatggac tttctagttt 2400 atgtgctcag gggtaatgag gttactgccg ttgctgattg gtcgatatat gtttccttcc 2460 atgttgattg gacacaggaa agtatgtcgg ccacacttat cccaaccttt gtatggcccc 2520 cagaaccagc tgatatttct tatttcaaag aagtatgggg gccttaccat ttcacacttg 2580 atggtaccga ggcaaaagaa agcttcagtt taatgcccgg tatggccatc ccccgcggtg 2640 cgcaaactgt gcgtaccttc ccccgcgttt tagctgcaca tttccgatcg tggactggga 2700 aagtcaggat gtctatccag gaggtttcct ccattttcct gaccggaaca tacatggttg 2760 gtgtgtcttg gaacgccact gctgatctca ccgacattac tactcggaaa cattggattg 2820 ttaaatccgg tgaggttttc gagttggatc tttactgtcc ttatggtgag aatccaactt 2880 ttacaggcct ggttaatgga ataccatata tcattgtaca caggcttgga ggaatcattg 2940 gtcccaagga ttctgttgga acgtttggtt ttatgataca cctacatggt ttaactggtg 3000 tatataaaaa tcctacgttg cacagtggag accgttctgt ggggagtgcc tggttccgtg 3060 ttactaatat ccttgatgat aacttggtgt ttaacatacc gggtagaatt gaagatatgg 3120 ttgcggttgc tgggaaatat gaagtcacga attatgctaa tcctaccagt atgctctttt 3180 ccgttactgg tttgcatggt ggcttcatac gtcttcatat aacatggtgt ccaaacacaa 3240 gtctcggtga gtcaaagggt actctcaaat atatgcaata tttgtaccat acgaccactg 3300 agaatttctt tggtgatcaa gcaacccgtg gcatcattga ccaaaatggt ttcacggttg 3360 accttgcctg tggcgatttc tttggtgcca cgagagttgg tctgaaaggg gaagttgaga 3420 gacttggcat atacagttca aatgccaagt ctattgctga aattcgtgtt tcctttgaga 3480 tactgtctat gaaattttat ggcagtacca tcagagtgaa gtgaactggc acagccctgt 3540 ggctccgggt taattgagcc aactaaagct gtgccatgtg agtttgtgtt ttacacatgg 3600 cccctgtgag tcttgacaac ttgcaggttc agcggtactg ttaaatgtct ttcttctggt 3660 ggtgacgtcc cagaacagta tgacgagttt tccaatttat cagtaaattg gagccgattg 3720 cagagtcggt ggtgtaaaag tgtgctacgg cttgttccgt aggcataata agccaagatt 3780 atctgtttta atgctttgag tcgtagttag ttttctttct gttgctccct ctttgaggtt 3840 gtgcctttag caagcacaca aaaatatgca ttttattttg ttcttaagct tccgtagtgt 3900 cgttctgtcc gaac 3914 //