ID AY303787; SV 1; linear; genomic RNA; STD; VRL; 7935 BP. XX AC AY303787; XX DT 11-NOV-2003 (Rel. 77, Created) DT 11-NOV-2003 (Rel. 77, Last updated, Version 1) XX DE Raspberry ringspot virus segment RNA1 complete sequence. XX KW . XX OS Raspberry ringspot virus OC Viruses; Riboviria; Picornavirales; Secoviridae; Comovirinae; Nepovirus. XX RN [1] RP 1-7935 RX DOI; 10.1016/j.virusres.2003.08.001. RX PUBMED; 14602206. RA Ebel R., Schnabel A., Reustle G.M., Krczal G., Wetzel T.; RT "Complete nucleotide sequence of an isolate of the nepovirus raspberry RT ringspot virus from grapevine"; RL Virus Res. 97(2):141-144(2003). XX RN [2] RP 1-7935 RA Ebel R., Schnabel A., Reustle G.M., Krczal G., Wetzel T.; RT ; RL Submitted (20-MAY-2003) to the INSDC. RL Staatliche Lehr- und Forschungsanstalt, Centrum Gruene Gentechnik, RL Breitenweg 71, Neustadt an der Weinstrasse D-67435, Germany XX DR MD5; de2fd844cde4b1dccd2e3bbc60b1d80a. DR EuropePMC; PMC2861173; 20229114. DR EuropePMC; PMC3314827; 22218961. DR EuropePMC; PMC4729743; 26843704. XX FH Key Location/Qualifiers FH FT source 1..7935 FT /organism="Raspberry ringspot virus" FT /segment="RNA1" FT /host="grapevine" FT /strain="cherry" FT /mol_type="genomic RNA" FT /db_xref="taxon:12809" FT CDS 137..7240 FT /codon_start=1 FT /product="polyprotein 1" FT /db_xref="GOA:Q6W8W4" FT /db_xref="InterPro:IPR000605" FT /db_xref="InterPro:IPR001205" FT /db_xref="InterPro:IPR004004" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR014759" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/Swiss-Prot:Q6W8W4" FT /protein_id="AAQ73822.1" FT /translation="MGWTCPVQGCMYSRSTWSNRGLKEDGLSSTMRCPGAMCGAMLVRS FT EPVQAPKATVVPQTPVTAVRPKRTVVSATPLRKQDCVVVVEVGFPALLSLEYPALAGRA FT RHTGEFDSALLARKPSNGGTARAPTGWFKPRVVRTQPAKKALPSWVSEARRLIKGALEG FT SNAFGPRYCREKFPKARLVWVLGMLSKSSPPSVAIGRQLKKSFLALQARIARALAKKQS FT ARAARRQEACRKIRLALQQARGIAALERQQARQLSGAGLYSVRLCTKRALSPIVEVPKR FT HKKKAISLPSPVSVQEFPEGLVGPNFWETSGLLNCVASPQRREDLVFPVYGIDSCRTDP FT EYFVVGPKSPSKIMGDTKPRLPTCPAEALNLLWASNLFEDWELDIIGQMVSDGLLTSQA FT FLDGCTLVSYYGQEQMVDSFHCLLQDPVPAEVAEALAVDVQALDFDAVFGCGISDFLRG FT TRDAMKGWIMDPVIAKSTTWCNTIIDKVRALFDQYFAPFHKIIDGMSYVNSLWAKCKEW FT AQSVLKNGSQLFSVMWETHCVSFVIIITCACTLLVENVLKELRLISRVGTLTSCVISGA FT LGILGCGYILAKCEDLAVVSASIRAFLGVLLCPPTMEAVDLNQSLIPEEIQATSWTGVD FT RVLGALNAVGSGLTGFNTDTIIYWGRFAQSFDGMRRGKDAVCALAACLFEKLGTVYNRV FT TGKEAAFFHELSSLVSIDVQGWLNSSRRVMAESIAFAKSDAVAFATVERLINDGETIQL FT TAASAPKSHSMQFGQILAERLRELRTLRNDMAHAGSFEGRRCVPFWLYIYGPPGVGKTT FT TMHEFSQALLTAFEFPSDSLTSKSATDKYWSLYRRQALVQIDDLGAISESGMEQEMMNI FT VSSATYNPTMAVANEKTTLFDSKFIVSTSNNYSAGTDAKIHDRKAFNRRRRVVIKTRGK FT AGVAFNPHDSTAAAEFCVVERDDRAETPIWVQSGEAPDDKELYWMDFRTTVAYVIEQAR FT IHHNAEDIEQAQYSMKHSRTRQLYQVCENYIGEVKMSVANFVPGDMLGAWNLEPKGRFF FT YSCVDGRVYSYDPEQKAHDEGPVDKALDFEQICLEKLSYTLQADIQGGPKSATAGIFLR FT SMVSGECAVESVDKLNRSASREHLIFFKNLSLADRVYLRLVQKRILQLAMVGDPLGLRS FT YTVMMEGFQNSYNYVKENGGRLLLILCSCMLLGIACYTFFNALAILIGGTSVAAGAAAM FT VDIGACGSTSTYASEYGAKMGRRNMPHRSREIPAVWSEETGHDEKWQLCGLLETCRSDM FT PAVHVNLVPGNKFAITKHQAQAIPDGSSVGLSVAGRSFRTFQWRASALTEYAESEICTY FT FDSRIPSLGKQAMKMYSDSDLDALNVKYFSTRTLHFRLVDDQVEKRHWDADACVISTPK FT TIVSTINGVIYRQEIPTAITYRRESVKHDCGALVFTEVRGKPKAVGMLVGTLGGTTYVC FT KFPHIEVDAFACVPDIRGFNLEAGVSTLGYSKLGWLDRRHQPHNSEKTEFVPIPEKYHM FT DDVPCKIPAVLSAKDPRLADIPQCMGYDPYKQGMEKFAHPMQEIDEQLLATVCDEIAQE FT FHDVGVRGRMVSMDEAINGHHKYEIPSFYVEGASTRELNELRTSCSAEVWCCDPRSDIE FT FEYPRIIPGPVESKWKCESTCCGCTFKSGGTEAIISFVKARSPCCEEIFFDGLDLTTSE FT GYPLFLDRPAGAKGKERFFEGSENQKFLIPDCPLDVQLKKGIEETHLGTPQLIIKESAK FT DELLKEGKVLPSEGMPGTRLFSICPAWYNIVVRQHFVYIAESVRKRRRTLSSQVGIVVG FT SREWDDLAARLRSKKNDKMYCCDYSKFDGLMTPQIVHAITNIYERMFSGNDGMSQFRQN FT LLMGICNRISICGSQVYRVEAGMPSGFALTVDFNSIFNEILVRCAYRSLVPEIERPFFS FT NNVVLIVYGDDNVLGIHPNIESAFNGNAIKAYMKEELGIKITDGADKLSPVICARPLEQ FT CEFLKRTWRKDRQYGLYRAPLVETSIYSCLRYVRLQNYDWQAPLLQNVQGSLYEASLHG FT PDMHARIYKHFATHFPKWVEEHELYTYEQCRTRFIAAKNGDFNFHPASAQMGHVFSQQT FT EIQELSQSQNPKRCFQLHPKIHICGPGHNEQDCFYVDVRVKGKITKGKGFHHAPVFSAG FT SGQLGTVKWASSFRSSSACPMRDLAVDAFKRGECVYFRDNGELINAWLAAINFGMSINA FT DGLDGLLQVYRNQGPTHLDDLSFYFEGGVVGVPAPAHLMVYGTDTSILNRLCPKTVLES FT APPPGRSSNVSERSQVQTFLHMSPKPCFITLKGSGKVCHGLRCNNSCRGHISCTDVVRN FT SAANQRAAMLDVLRRGCYNIQ" XX SQ Sequence 7935 BP; 1902 A; 1715 C; 2076 G; 2242 T; 0 other; tttgtctttc atctcagtct cattgttgaa gctcacatat ctttatctct tctcgatatc 60 tcttcttcaa tctctctatt tgtcgtgaca aagcaaagtt tacagttttc ttataattgg 120 ttaaaaactg gttacaatgg ggtggacttg ccctgttcag gggtgtatgt attcccgctc 180 cacttggagc aatcgtggcc tcaaggagga tggtctatcc tccaccatgc gttgtcctgg 240 tgccatgtgt ggcgccatgc tcgtcaggtc ggagcccgtt caagctccaa aggctactgt 300 ggtgcctcaa accccggtta ctgctgtccg ccccaagagg acagtggtta gtgcgacacc 360 cctgcgtaag caggattgtg tcgtagtggt ggaggtgggg ttcccagccc tactctccct 420 ggaataccct gcacttgcag gaagagctcg ccacactggc gagtttgact ccgcgctgct 480 cgcgcgaaag ccctccaatg ggggcactgc tagagcacct accggttggt ttaaaccgag 540 ggttgtgcgc acacaacctg ccaagaaggc actcccttct tgggtttctg aggcccgccg 600 cctaataaag ggggccttgg aggggtcaaa tgcgtttggc ccacgctact gccgggagaa 660 attcccgaag gcccgccttg tgtgggtact gggtatgctc tcaaagagca gccctccttc 720 agttgccatt ggaaggcaac tgaagaagag tttcctggca ctacaagcta ggattgccag 780 ggcactggca aagaaacaaa gtgcccgtgc tgcacgcagg caagaggcct gcaggaagat 840 ccgccttgct ttacagcagg cgaggggtat tgccgcccta gaacggcaac aggcacgcca 900 gctctctgga gctggtctgt attccgtgcg tttgtgcacg aagagggctt taagccctat 960 tgtggaagtg cccaagaggc acaagaaaaa ggcaatatct ttgccttctc ctgtttctgt 1020 acaggagttt cctgagggcc ttgttggtcc taatttttgg gagacatctg gtctcctaaa 1080 ctgcgtcgcc tccccgcagc gaagggagga tttggtcttt cccgtttatg ggattgacag 1140 ctgccggaca gatccggaat actttgtggt cgggcctaaa agcccttcca aaatcatggg 1200 ggacactaaa ccccgcctgc ccacatgccc tgcagaggca ttgaatttat tgtgggcttc 1260 caaccttttt gaggactggg agctcgacat tatcgggcag atggtctcgg atggcttgtt 1320 gacctcacaa gccttccttg atggctgtac cctggtctca tattacggcc aggaacagat 1380 ggtggactct ttccactgtc ttttgcagga tcctgttcct gctgaggttg ctgaggcgct 1440 agctgttgat gtgcaggcgc tggattttga tgctgtcttt ggttgtggca tttcagattt 1500 ccttcgggga actcgtgatg ccatgaaagg atggatcatg gatccagtta ttgccaagtc 1560 aacaacttgg tgtaacacca tcattgataa ggtgcgtgct ttatttgatc aatatttcgc 1620 accatttcat aaaatcattg atggtatgtc atacgtaaat tcactgtggg ccaaatgtaa 1680 agagtgggcc cagtccgtgc tgaagaatgg ttcacaactg ttctctgtca tgtgggaaac 1740 acattgcgtg agttttgtca tcatcattac ttgtgcgtgt accctgctgg tagaaaatgt 1800 gttgaaggaa ctccggttga tatcacgtgt tggtaccctt accagctgtg ttatatccgg 1860 tgctcttggg atactaggct gcggttatat ccttgctaag tgtgaggatc ttgctgtggt 1920 atctgctagt attcgagcct ttctcggcgt gttgctgtgt cctccaacca tggaggcagt 1980 ggatctgaac cagtccttga ttcctgagga aatccaagct acgagctgga ctggtgtcga 2040 cagagtgctg ggggcactga atgccgttgg ttccgggttg acaggattca acacggatac 2100 cataatatat tggggcagat ttgcccaatc ttttgacggc atgagacggg ggaaggatgc 2160 tgtgtgcgct ctcgcagcat gtctttttga aaaactgggc acggtatata atcgtgtaac 2220 aggtaaggaa gcagcttttt tccatgagct ctcctcgctt gtttccattg atgtccaggg 2280 atggttgaac tcttcacgca gagtgatggc agaatctata gcttttgcta aatctgacgc 2340 tgtcgctttt gccactgtgg agagactgat aaatgatggt gagaccatcc aattgaccgc 2400 tgcttctgct ccaaagtccc actctatgca gtttggtcag atacttgctg agcgcttgag 2460 ggaactccgt actctgcgga atgatatggc gcatgctggt tcctttgagg ggcgtaggtg 2520 tgtacctttc tggttgtaca tctatggacc tccgggggtg ggtaaaacca ctaccatgca 2580 tgagttttca caggctttgt tgacggcctt cgagtttccc tcagactccc taacatccaa 2640 aagtgccact gataagtact ggtcactcta tcggcgccaa gctttggtgc aaatagatga 2700 cctgggtgct atctctgaga gtggtatgga acaggaaatg atgaatatcg tttcctccgc 2760 cacatacaat cctaccatgg cggttgctaa tgaaaagacg acgcttttcg atagcaagtt 2820 cattgtctca acgtcgaaca attactctgc aggcactgac gccaagatac acgaccggaa 2880 agcttttaac cggcgtcgca gagtggttat caaaacccgt gggaaggcgg gagtggcctt 2940 caatccccat gatagcactg cagcagcgga gttctgtgtg gtggagaggg atgatcgggc 3000 agagacacct atatgggtgc aaagtggtga ggcccctgat gataaggaac tatattggat 3060 ggattttcgc acaactgtgg cttatgtcat agagcaagct agaatccatc acaatgcaga 3120 ggacattgag caagcccaat attcaatgaa acacagccgg acaagacaat tgtaccaggt 3180 gtgcgagaat tacattgggg aagtgaaaat gtccgtggcg aattttgtcc ctggggatat 3240 gttgggagct tggaatctgg agcccaaagg caggttcttt tattcatgtg ttgatggtcg 3300 ggtttattct tatgatcccg agcagaaagc ccatgatgaa ggaccggttg ataaggctct 3360 agattttgag cagatatgtt tggaaaagct ctcctacacc ctgcaggctg atattcaggg 3420 tgggccaaaa tctgcgactg ctggtatttt tttgcggtca atggtttcag gagagtgtgc 3480 tgtggaaagt gtggacaagt taaataggag tgcatctcgt gagcacctta ttttctttaa 3540 aaacttgtcc ctggctgata gggtgtatct ccgcctcgta caaaagcgca ttttacagct 3600 tgcgatggta ggagatcccc tgggattgag aagttacaca gtaatgatgg agggattcca 3660 aaattcttat aactatgtta aagagaatgg agggagactt ctgttgatat tgtgtagctg 3720 catgctgttg ggtattgcct gctatacttt tttcaatgca ttggcaatac tcattggtgg 3780 gacttcagtg gctgctggcg cagctgctat ggttgacatt ggagcgtgtg gtagtacttc 3840 tacctatgca tcggaatacg gcgccaagat gggccgtagg aatatgccac atcgttccag 3900 ggagattcct gcagtctggt ctgaagagac tggacatgat gagaaatggc agctgtgtgg 3960 tcttctggag acctgcagaa gtgacatgcc cgcagtacat gtgaatcttg taccgggtaa 4020 taaatttgcc ataactaaac accaagccca agccatccca gatggttctt ctgtgggtct 4080 gagtgtggca ggaaggagtt tcaggacgtt ccagtggcgt gcttctgcac ttacggagta 4140 tgctgagagc gagatctgta cgtactttga tagccgaatt ccctctttgg gaaaacaggc 4200 catgaaaatg tactcagatt ccgatcttga tgccttaaac gtcaagtact tttcgactcg 4260 tacactgcat tttaggttgg tggatgatca agtcgaaaag cgccactggg acgcggatgc 4320 gtgtgttata tcaaccccaa aaaccattgt ttctactatc aatggggtga tatatcggca 4380 agaaataccc acagctatca cgtatagacg tgagagtgtg aaacacgact gcggcgcgct 4440 cgtttttacg gaagtgcgtg gcaaaccgaa agctgtgggt atgttggttg gaactttagg 4500 gggaacgaca tatgtgtgca aatttcctca cattgaggtt gatgcttttg catgtgttcc 4560 cgacatccga ggattcaatc ttgaagcagg agtttctact cttggctatt ctaaacttgg 4620 gtggttggat aggcggcatc agccgcataa cagtgagaag actgagttcg tgcccatacc 4680 ggagaaatat cacatggatg atgttccatg taagataccg gcagtgctca gtgctaaaga 4740 cccacggttg gcagacatac cccaatgtat gggatacgat ccctacaaac aaggtatgga 4800 aaagtttgct catcccatgc aagaaattga tgagcaactc cttgccaccg tgtgtgatga 4860 aatcgcccaa gagtttcatg atgtgggcgt gcgagggagg atggtctcca tggatgaggc 4920 catcaacgga catcataaat atgagatccc ctcgttttat gttgaaggtg ccagtaccag 4980 agagctcaat gagttgcgta cttcttgctc tgctgaagtc tggtgctgtg atcccaggag 5040 tgatattgaa tttgaatatc ctcgcatcat ccctggtccc gttgaatcca aatggaagtg 5100 tgagagtaca tgttgtggtt gtactttcaa aagtggtggt actgaggcca tcataagttt 5160 tgtcaaggcg cgatctccat gctgcgaaga aattttcttt gacggccttg acttaaccac 5220 ttcagagggc taccctcttt tcctggaccg cccagctggg gcaaaaggaa aggaaagatt 5280 ttttgagggt agtgaaaatc aaaagttcct cataccggat tgtccgcttg atgtacagtt 5340 gaagaaaggt attgaggaga ctcatcttgg cacgccacag ctcattatta aagagagtgc 5400 taaggatgag ttactgaaag aagggaaggt tttaccttcc gaggggatgc cgggaacacg 5460 attgttctcc atttgtcctg catggtacaa catcgttgtg cgccaacact ttgtatatat 5520 tgctgaaagt gtgcgcaaac gaagacgtac tttgtctagt caggtgggaa ttgttgtggg 5580 ttctcgtgag tgggatgatc ttgcagctcg actcaggtcg aaaaaaaatg ataagatgta 5640 ctgctgcgat tattccaagt ttgatgggct gatgactccc cagattgtcc atgctatcac 5700 aaacatttat gagagaatgt ttagtggtaa tgacgggatg agtcagttcc ggcagaacct 5760 gctgatgggt atctgtaatc gtatctctat ctgtggatca caagtttata gggttgaagc 5820 tggcatgcct tctgggtttg ccttgactgt tgacttcaac tctattttta atgagatact 5880 ggtcaggtgt gcttatcgct ctcttgtacc tgagattgag agaccttttt tttccaataa 5940 tgtggtcctg attgtgtatg gcgatgataa tgttttgggt atccacccaa acattgagtc 6000 tgcctttaat ggcaatgcaa ttaaggccta catgaaggag gaattgggga ttaaaatcac 6060 tgatggtgcc gataagctca gccccgttat ttgtgctcgt cctctcgagc agtgtgagtt 6120 tttgaagcgt acctggagga aagaccgaca gtatggacta taccgggctc cacttgtgga 6180 gactagtata tactcatgct tacgttacgt acggcttcaa aactatgact ggcaagctcc 6240 cctcttgcag aatgtacagg ggagccttta tgaggctagt ctacatggtc cagatatgca 6300 tgcgcgtatt tataaacatt ttgcgacgca tttcccgaag tgggtggaag agcatgaatt 6360 gtacacttat gaacagtgtc gcacacgatt cattgctgct aagaatggag attttaattt 6420 ccatcctgct tcggcacaaa tgggccatgt tttctcccaa cagactgaga ttcaggagtt 6480 gtctcagtct caaaatccaa aaagatgctt tcaactccac ccaaaaatcc acatctgtgg 6540 tcctggacat aatgaacaag actgttttta tgttgatgtc cgggtgaaag gaaagattac 6600 caagggtaag ggcttccatc atgcacctgt tttttccgca ggttctggcc aacttggtac 6660 tgttaaatgg gcatcatcgt tccgctcatc atcagcgtgt cccatgaggg atttagctgt 6720 cgatgctttt aaacggggcg aatgtgttta cttcagagac aatggtgagt taatcaatgc 6780 ttggttagcc gctattaact ttgggatgtc cattaatgcc gatgggttgg atggccttct 6840 tcaggtctat cgcaaccagg ggccaacaca cctcgatgat ttaagtttct attttgaagg 6900 tggtgttgtt ggtgttccag ctcctgcaca cttgatggtt tatgggactg acacatcaat 6960 tctcaatcgc ttgtgtccca aaactgtttt agaaagtgcc cctcctccag gacgttcaag 7020 caacgtgagt gagcgcagcc aggtgcaaac attcttgcat atgagtccaa aaccttgttt 7080 tataacactc aagggctcag gtaaggtttg ccacggtctg cgctgcaata actcatgtcg 7140 cggccacatt tcttgtactg atgtggttcg caattctgca gccaatcaac gagctgcaat 7200 gctggatgtt ctgaggaggg ggtgctacaa tatccagtag gagctggatc ttttcaggca 7260 agccggcaga cttcgtgtgc tgctaccacg gaattacgtg gttttagctg acaccttact 7320 gtcgttttat tattttgttt tagaataata atcggctagt ttcgccgaga aggaaacgtg 7380 ctggagccac accaaaattc tgatactata tgttccgtga aatcggtaat cagataagtg 7440 ccaaactcta cgacgctttg ggggcgtatg aagtagatac cctgttaata aagggttccg 7500 tgaaatcggt atgtggcaac tctctgaaac tcagtctcta aggtgtggga gcaacccctc 7560 ggctccgggt taattgagcc aactaaagct gtgccatgtg agtttgtgtt ttacacatgg 7620 cccctgtgag tcttgacaac ttgcaggttc agcggtactg ttaaatgtct ttcttctggt 7680 ggtgacgtcc cagaacagta tgacgagttt tccaatttat cagtaaattg gagccgattg 7740 cagagtcggt ggtgtaaaag tgtgctacgg cttgttccgt aggcataata agccaagatt 7800 atctgtttta atgctttgag tcatagttag ttttctttct gttgctccct ctttgaggtt 7860 gtgcctttag caagcacaca aaaatatgca ttttattttg ttcttaagct tccgtagtgt 7920 ccgttctgtc cgaac 7935 //