ID AY291208; SV 1; linear; genomic RNA; STD; VRL; 3753 BP. XX AC AY291208; XX DT 01-JUN-2004 (Rel. 80, Created) DT 10-MAY-2005 (Rel. 83, Last updated, Version 2) XX DE Grapevine deformation virus subgroup A segment RNA2, complete sequence. XX KW . XX OS Grapevine deformation virus OC Viruses; Riboviria; Picornavirales; Secoviridae; Comovirinae; Nepovirus. XX RN [1] RP 1-3753 RX DOI; 10.1007/s11262-005-6776-5. RX PUBMED; 15830151. RA Ghanem-Sabanadzovic N.A., Sabanadzovic S., Digiaro M., Martelli G.P.; RT "Complete nucleotide sequence of the RNA-2 of grapevine deformation and RT Grapevine Anatolian ringspot viruses"; RL Virus Genes 30(3):335-340(2005). XX RN [2] RP 1-3753 RA Abou Ghanem-Sabanadzovic N., Sabanadzovic S., Digiaro M., Martelli G.P.; RT ; RL Submitted (06-MAY-2003) to the INSDC. RL Istituto Agronomico Mediterraneo, Via Ceglie 9, Valenzano, BA 70010, Italy XX DR MD5; 1d44f8b2c6b0812939860540c0c28b47. DR EuropePMC; PMC3314827; 22218961. XX FH Key Location/Qualifiers FH FT source 1..3753 FT /organism="Grapevine deformation virus" FT /segment="RNA2" FT /mol_type="genomic RNA" FT /note="subgroup: A" FT /db_xref="taxon:233784" FT CDS 237..3560 FT /codon_start=1 FT /product="p2 protein" FT /note="polyprotein" FT /db_xref="GOA:Q6JX05" FT /db_xref="InterPro:IPR005054" FT /db_xref="InterPro:IPR005305" FT /db_xref="InterPro:IPR005306" FT /db_xref="InterPro:IPR021081" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:Q6JX05" FT /protein_id="AAQ56597.1" FT /translation="MGKFYFSDRRLAAYCLGTDGRGTFEQWLQCMEDPSFRKEVKERVQ FT FDRAVPSVSRIFEYPVGRGPVEGPAGIAWHYIVHGHSLGLVPPTQPAKADEVVVPQPKK FT VVIPLPPPAPKPYFRPVGAFAPTRSGFIRATVERLSREREESRAAALFAELPLEFPQGA FT PLRLSLAVKFAMLKHTTWRKWYDTSDERLLEAHPGGPCLPPPPLIQNPPSFCERVREFC FT RMKSCARAFALETSLGLNKAWVGYVDIPSISVCCADGRTTGGQTIAQEADPLQHRVSSN FT TAPGRAQWISERRQALRRREQANSLQGLAAQTDMTFEQARNAYLGAADMIEQGLPLLPP FT LRSAYAPRGLWRGPSTRANYTLDFRLNGIPTGTNTLEILYNPVSEEEMEEFRDRGMSAV FT VIDALEIAINPFGMPGNPTDLTVVATYGHERDMTRAFIGSASTFLGNGLARAIFFPGLQ FT YSQEEPRRESLIPLHVASTNATVDTDSLLAAINVGTLRQHVGSMHYRTVASAEHQAQVQ FT GTTLRATMMGNTVVVSPERSLFTGTPNAHVEIGGGSSINMVGPLQWESVEEPGQTFSIP FT SRSRSVRIDRNADVGEALPRMSSTTRGLAGRGSVQVPKDCRKDAFLKTLDMRSMTAGFA FT GIQYEKWITSGLCMPKFEVVIRYPPNAFTGLTWVMSFDAYNRITTSITTTASPVYTLSV FT PHWLLFHAKGTTTCELDYGELCGHAMWFESTTFESPKLHFTCITGNNKELAADWEFVVE FT LYAEMEPVSSFLGRPNFVHTANPTLGSFKFFTLQPQYYALNTASAIKNVALDLGSTLRS FT GTNLVYSYNNALLSYFLGFGGIIKGKIHFCGPITYGAVIRIVSEWAGNTATWNNVFKYP FT GVNVDSSGEFEIEIRSPYHRTPLRLMDTQVGTNMSTLSLYAISGPIAPSGETADMPIIL FT EIDEIKLPDLSVPTFPNDYFLWVDFSAFTVDEEEYVIGSRFFDISSSTSTVALGNNPFA FT HMIACHGLHCGTLELKFMWSLGTTTYGGSSGSVIFTKLCGDKATGLDGGSEVIALQELS FT HTTSMYIGNFAGVNPNTALSLYSRWFAIKLDKARSMKILRVLCRPIGDFNFYGRTSFRV FT " XX SQ Sequence 3753 BP; 912 A; 774 C; 913 G; 1154 T; 0 other; atgaaaaatt tctgcaagtt cctacgttac cgtgaattca gctttttctt gtgaagagtt 60 taagaaactc aaagttgaat ttccttgcga agagtttaag aaactcacaa agcgaagagt 120 ttaagaaact catcattgct ttttccatct tttatttcgc gttttatttg tttagtgttt 180 tacttagttg gtctttaaag ctttattttg ttttcttttt agcttatctt gcccgtatgg 240 gcaagtttta ttttagtgac cggcggcttg ccgcctactg cctcggcact gatggccgag 300 gcacctttga acaatggctc cagtgtatgg aggatccttc ctttaggaag gaggtcaaag 360 agagggtaca gttcgaccga gctgtacctt ctgtcagcag gatatttgag tatcctgttg 420 gccggggccc tgtagagggc cctgctggaa tcgcctggca ctatatagtg cacgggcatt 480 cattgggatt agtcccgccg acccagccgg ctaaagctga tgaggttgtg gtgccacaac 540 cgaagaaggt ggtgattccc ttacctcctc ctgcccccaa gccttacttt aggcctgttg 600 gggcttttgc accgacccgg tccgggttta tccgggccac tgtggaaagg ctctcccggg 660 aacgggaaga gtcgagagct gcggcactct ttgccgaatt gccattggag ttccctcaag 720 gggctccttt gaggttgagc ttggcagtga aatttgccat gctcaagcat accacttgga 780 ggaagtggta tgacactagt gatgaacgcc tcctagaggc tcatcctggt ggtccttgtc 840 ttcctcctcc tcccctaatc caaaatcctc cctctttctg tgagagggtt agggaatttt 900 gcaggatgaa gtcctgcgcc agggcttttg ccctggaaac ctccctgggc ctcaataagg 960 cttgggtggg ttacgtggac atccccagca tttctgtatg ctgtgcggat ggtagaacta 1020 ccggggggca aactattgct caagaggctg accctttaca acatagggtt agctcaaata 1080 cggcccctgg tagggcacaa tggatctcag agcgtagaca agctctgaga aggagggagc 1140 aggcaaatag cctgcaagga cttgctgctc agacagatat gacatttgag caggccagga 1200 atgcttatct tggcgctgcc gacatgattg agcaaggctt accactgctt cctcccttac 1260 gtagtgcata tgcccctagg ggtttatgga gagggccttc taccagagcc aattacacgt 1320 tggactttag gctcaatggt ataccgactg ggactaacac attggaaata ttgtataatc 1380 ccgtgtcgga agaagagatg gaagagtttc gggatagagg catgtcagct gtagtgatag 1440 atgcgctaga aatagcaatt aatccctttg gcatgcctgg aaatcccaca gacttgaccg 1500 tcgtggcaac atatggacat gagcgtgata tgacgcgcgc ttttattggt tcagcttcaa 1560 cgtttctagg aaatgggtta gcaagagcta tcttctttcc tggattacaa tatagtcaag 1620 aagagccaag gcgtgaatct ttaattcccc tgcatgttgc ttctactaat gccactgtag 1680 acactgattc actcttagca gccattaatg ttggtactct acgccaacat gttggttcta 1740 tgcattatcg gacagtggca agtgccgagc accaagccca ggtgcagggt accactctca 1800 gggctaccat gatgggtaat actgttgtgg tttctcctga aagaagccta tttactggaa 1860 ctcctaatgc acatgtggaa ataggaggtg gttccagtat caacatggtg gggcccttac 1920 agtgggaaag tgtggaggaa cctggacaaa ctttctccat tcctagtcgt tctcggtctg 1980 ttaggatcga taggaatgcc gacgttggag aagctttgcc caggatgagc tctactacca 2040 ggggtcttgc tggaagaggg tcggtccagg tacctaagga ttgtagaaaa gatgctttcc 2100 ttaagactct ggacatgcgg agcatgactg ctgggtttgc tggaatccag tatgagaagt 2160 ggataacttc ggggttgtgt atgccaaaat ttgaagttgt tattcgctat ccaccaaatg 2220 cttttacagg tttgacgtgg gttatgagtt ttgatgcata taatagaatt actacaagca 2280 tcactactac tgccagcccc gtttatacat tgtctgtgcc ccattggttg cttttccatg 2340 ccaagggcac tacgacttgt gaacttgatt atggggaatt gtgtggccac gctatgtggt 2400 ttgagtcaac cacatttgaa tcccctaaat tacatttcac atgtataacg ggaaataata 2460 aagaacttgc ggcagactgg gaattcgtcg ttgaactata tgcagagatg gagccagtaa 2520 gttcttttct tggaaggccc aattttgtgc atactgccaa tcctacattg ggttctttta 2580 agttttttac attgcagcct cagtattatg ctttaaatac tgcttcggcc attaaaaatg 2640 tggcacttga tttgggttcc actcttagga gtggtaccaa tctggtgtat tcctataata 2700 atgctctctt aagctatttt cttggctttg gaggtattat taaagggaaa attcattttt 2760 gtggtcctat aacatacggg gctgttataa gaattgtcag tgagtgggct ggcaacactg 2820 cgacgtggaa caatgttttt aaatatcctg gtgtaaacgt cgacagtagt ggagagtttg 2880 aaattgaaat tcgctctcct taccaccgta ctcccttgcg cttaatggac actcaagtag 2940 gtactaatat gtctacattg agtttatatg ctatttctgg accaatagca ccatcagggg 3000 agactgctga catgccaatt atccttgaaa ttgatgagat caagttacct gatctctcag 3060 ttcccacttt tccaaatgat tattttttgt gggtggattt ttcggctttt acagtggatg 3120 aagaggaata cgtcattgga tctcgtttct ttgatatttc ttcttcaact tctactgttg 3180 cgttaggtaa caaccccttt gctcatatga ttgcttgcca tggacttcat tgtggaacac 3240 ttgaattgaa attcatgtgg agtctgggca caaccactta tgggggtagt tctggcagtg 3300 tcatcttcac taagttatgt ggagataaag ccaccggttt ggatggaggg tcagaggtta 3360 tagccctaca agaattgtcg cacacaactt caatgtacat tggcaatttt gctggggtga 3420 atccaaatac tgctctttca ttgtatagca ggtggtttgc cattaaactc gataaggcta 3480 ggagtatgaa aatactcaga gtactttgcc gtcctattgg agattttaat ttctatgggc 3540 gtactagttt cagagtttaa tgtgccagaa tagtcttggg aatctgacta taaaagaccc 3600 atttgtatta taatttgttt taacttgttt actgcttttg tgtgtttaat ttcatgcttt 3660 aagtggcgac agtgtgttgt ttgtcctttg gacacacttg ctatgttgga cgcaaaaaga 3720 tttttatttc tttttactgt tttacatttt tat 3753 //