Dbfetch
ID AY244516; SV 1; linear; genomic RNA; STD; VRL; 7378 BP. XX AC AY244516; XX DT 13-AUG-2003 (Rel. 76, Created) DT 13-AUG-2003 (Rel. 76, Last updated, Version 1) XX DE Grapevine virus A, complete genome. XX KW . XX OS Grapevine virus A OC Viruses; Riboviria; Tymovirales; Betaflexiviridae; Trivirinae; Vitivirus. XX RN [1] RP 1-7378 RX DOI; 10.1016/S0042-6822(03)00239-3. RX PUBMED; 12919748. RA Galiakparov N., Goszczynski D.E., Che X., Batuman O., Bar-Joseph M., RA Mawassi M.; RT "Two classes of subgenomic RNA of grapevine virus A produced by internal RT controller elements"; RL Virology 312(2):434-448(2003). XX RN [2] RP 1-7378 RA Galiakparov N., Mawassi M., Ganfy R., Sela I., Tanne E.; RT ; RL Submitted (25-FEB-2003) to the INSDC. RL Virology, The Volcani Center, P.O.B. 6, Bet-Dagan 50250, Israel XX DR MD5; 6a82015438dce51fe51873e829804b6e. XX FH Key Location/Qualifiers FH FT source 1..7378 FT /organism="Grapevine virus A" FT /mol_type="genomic RNA" FT /note="infectious clone" FT /db_xref="taxon:35288" FT 5'UTR 1..86 FT CDS 87..5207 FT /codon_start=1 FT /product="replicase" FT /note="ORF1" FT /db_xref="GOA:Q7T466" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR005123" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="InterPro:IPR027450" FT /db_xref="InterPro:IPR037151" FT /db_xref="UniProtKB/TrEMBL:Q7T466" FT /protein_id="AAO84267.1" FT /translation="MSISVSSQRVAVSNLYTNGSEESVKAIKELKSKRLLETETRLDGL FT FDYYIPDTLREILSGYGMEFSVHSFQGHAHPVSKMIENHMLYRVAPNYFSNNTLVVSCK FT EGKIKRLRLKNAGNRNLNFTQYNRLVHAKDHHRYENAFRELTLASDNLINKESQSECIF FT IHDEVQYWSLDEMQRFLGSLSKVDRIVYSIIYPAEVEAGYSQSLFPEAYTFDLKEGRLI FT WYPDGKAEGAYTQPINPWLLRCSKTEDSKGRSWTITKLQTVGAHHLFSAIRGSYLTEES FT YKYDNFTIINPNDILRGRRGSKPLYLRARMIKPTLLYLLALKKSDSNSAVAKLRMLSSR FT EENMDEALFVAQLAKQIRDTALYDKMGNPSLRSILSESFYDVAGNLFTRLFNRPEYDAR FT CLEKFIRACETTEIHIGRRFMEGVLRGSSYQVQKVVDWVEDEEANALSEVNLVELTRNE FT REPQPYGSEQLQGSGARVRFPLSRLMRAHEMVHEAQFEVNFNHIRIVCSSKALVHLRQY FT LIRLGRFKFMEGRAIEDIQDIQEGLELGLITEEEAESRLLPPDNIAPSEEAQEEVQQSG FT PIEEVSEKFMGARKLVKENIYSEKLHNREVAFYSRYSKQYSYKGGSHHSLGWDKALDEL FT IQELGLDESYDHCLIQRYSEGGSINFHADDEPCYLPGGTVVTVNLNGEAIFELKENTSG FT KTESKRLKDGDVFTMGAGMQQTHKHKVTSLTNGRCSITLRNKTVDYEARTEAINSDYEE FT DVAALDEGIEYLQKNQGNMCSLKAFAEHMQLSIPSVISIVNGASPQTLREIEGGGISVA FT TLVNLSRALDFPIAIHGERGYAETPGTYRRLHLKITTGHVEPFDGVISKGGLKEALLLS FT DGVGIGLFRVDKNKADRLAQSFYNGNTGVLLGKYNKGKMHSEGIDEPKEVLTAFGFAGS FT GKSHWCQTILKHCSVEKALVISPRKVLKDDWTSKISKRHKVVTFEVAFMDDYGCKDVVI FT DEIGLLPPGYIDLVIAVHRPRTLVLLGDPLQSTYHSKRDNVVLEASQEDIFARIKGQLP FT YLCYSHRLPKNCRLFELECMGAESEKRVTYRSSRLKDEPVICATRAMKEEKGSGWYTVS FT ETQGLSFKSCLIHLDEHWAKKEDEDVMVALTRSRGEIGINVTNALKKTLIASAKSTLLR FT KVLKGETYRRSEIVAMARKHIPEVTVLFEESRLAENVDYEARLAGDPYLKSLLSLYDEI FT EMDEVEIEEPVALEPVKTHLALSEKMNELAPFELKAKEYREQYTDAGRTEQIDEEGYSG FT EEANPMTHKALYLRHTSDDTATFMMSVRKRLRFRNYEANRRKYKACNGIGKQMFSVFKE FT TYQLKEIDSLPDLERCEMEFMKKRVEKSAGLIEQHAGRSDPDWPSNYLKIFLKQQTCTK FT MEKRGVDAKAGQTIACFAHSVLCRFGPILRQTERALRELLPENVMIYSQKNYMDLDKWA FT KTWVESMMGTDSDYEAFDRSQDEKVLDLEVEVLRFFLWPEDLIREYEELKLMMGCALGD FT LAVMRFSGEFGTFFFNTICNMVFSCMRYHMDRNTPICFAGDDMYSPGILRTKNDYEGTL FT DQLTLKAKVHISEEPLFCGWRMSPFGIVKEPNLILDRWKIAKRSGNLSLCLVNYAIEAS FT FGYRLSEYLYDVNIDVDAQQELIREIVEKKHLLPKKIADLFSEDECEAHSDGDEDFLSN FT DIAKLYRVG" FT CDS 5176..5709 FT /codon_start=1 FT /product="19 kDa protein" FT /note="ORF2" FT /db_xref="UniProtKB/TrEMBL:Q7T465" FT /protein_id="AAO84268.1" FT /translation="MTSQSCTELVEFLSQGGDRCSLDRTSLESLSYTQCLYLLSDLRGL FT GYHSIDSILHILECSEAERFEIYRIFRRHGIGIGEALQLGVRKSLCYSPRSTAEILDDL FT LSRISRGGAFLPSDLGAVKGELLVTFQPSRLSVDLYANNKKVCTRTCQGKGDAGYVARR FT FSGYKGLALRSQGN" FT CDS 5651..6487 FT /codon_start=1 FT /product="movement protein" FT /note="ORF3; 30 kDa" FT /db_xref="UniProtKB/TrEMBL:O39860" FT /protein_id="AAO84269.1" FT /translation="MSHGDSQATKGSLSDPKEIKIFNVKRNTKDLETLNKSLHRGDVYD FT TELIERVFPRRTKKCVVHKELVVQDGRVDCELDLMDGGLDDIDETEYPLYHVGCIVIAL FT MPHGKNLQGKVVVEVIDTRLKVGSGRISRSVMDMSKPLSACADFPGYFISTSDLLNGYT FT LHLSITTTDLQFVDGVHPFSVQLMNIGRLCGDDMKTRYAVGEASKILHQNILNSQGDGE FT MIPRGVQVQKVPDTLVMPEVYETIKRLGLKTNGTLRQEGGDKGDHRGTGAGESHAN" FT CDS 6411..7007 FT /codon_start=1 FT /product="coat protein" FT /note="ORF4; 21 kDa" FT /db_xref="GOA:Q7T464" FT /db_xref="InterPro:IPR008879" FT /db_xref="UniProtKB/TrEMBL:Q7T464" FT /protein_id="AAO84270.1" FT /translation="MAHYAKRVEIRAIIEELVLAKATPTEDASESGYDRNMYLNTLFGY FT IALVGTSKKAVHYGEVDIVGPKASKKTGIDPRGKMVVSELVGRMRTLSVAVSEGPVKGA FT TLRQMCEPFAQNAYDFLVLMAEMGTYSQLGHKDTRSGFKEPQVMFDFASGLDLKALTLQ FT KAPVIQAMHSRLFRTEGAKGVFNAQSSVGEQAVEI" FT CDS 7008..7280 FT /codon_start=1 FT /product="10 kDa protein" FT /note="ORF5" FT /db_xref="InterPro:IPR008891" FT /db_xref="UniProtKB/TrEMBL:Q8B3K5" FT /protein_id="AAO84271.1" FT /translation="MDDPSFLAGRSTFAKRRRARRMNVCKCGAIMHNNEDCKSSSISGH FT KLDRLRFVKEGRVTLTGETPVYRTWIRWVETEYHIYILETSDDEK" FT 3'UTR 7281..7348 XX SQ Sequence 7378 BP; 2197 A; 1555 C; 2027 G; 1599 T; 0 other; gaatatttaa cttgattccc attgattata agtgaacata cgttaccagc acccacgctc 60 tgcaaagtac ctgtattttc accgccatgt caatatcagt atcctcccaa cgtgtagcag 120 tttccaacct ctacactaac ggatctgaag aatcagttaa agccataaag gagttaaaga 180 gcaaacggtt attggaaacc gaaaccaggt tagatgggct ttttgattac tacatcccag 240 acaccttgag agaaatactc tctggttatg gtatggagtt ctcagtccac tctttccagg 300 ggcacgctca ccccgtaagt aaaatgattg agaatcatat gctgtataga gtagcgccga 360 actatttttc taacaatacc cttgtagtta gctgtaaaga aggaaaaatc aagcgcctaa 420 gattaaagaa cgcaggtaat aggaatttga acttcacaca atacaataga ttggtacacg 480 ccaaggatca tcacagatac gagaatgcgt tcagagagct gacgttggca tctgacaatc 540 tcataaacaa ggaatcccaa agcgagtgca tcttcattca tgacgaagtt caatattgga 600 gcctagacga aatgcagaga ttcttaggta gcttgtctaa ggtagataga atagtgtaca 660 gcatcatata cccagcggag gtagaagcgg ggtattcaca gagcctgttc cccgaggcat 720 atacttttga tttaaaagag gggaggctca tatggtaccc tgatggtaag gccgagggcg 780 cctacactca gccaatcaac ccttggctat taaggtgctc aaaaaccgag gactccaaag 840 gcaggtcatg gactataacc aaattgcaaa ctgttggggc tcaccacctc tttagtgcaa 900 taaggggaag ttatctgacg gaggaatcat acaaatatga taacttcacg ataatcaacc 960 ccaatgatat cctgagaggg aggagaggga gcaagccgct atacttgaga gcccgtatga 1020 taaagcccac actgctatat ctcctggcac taaagaagag tgactcgaac tctgcggtgg 1080 ccaagctgcg aatgctgagc agccgcgaag agaacatgga cgaggcacta ttcgtggctc 1140 aactggcgaa gcaaatcagg gacacagcgc tctatgacaa gatgggcaat ccaagtctgc 1200 ggagcatact gtccgaatca ttctacgatg tggccggaaa tctgttcact agattgttca 1260 acaggccaga atacgatgcc aggtgcttgg agaagttcat cagggcctgc gaaaccacag 1320 agatacacat cggcagaagg ttcatggagg gggtgctacg gggctccagt tatcaggttc 1380 agaaagtagt agattgggtt gaggacgaag aggccaacgc gctgagtgag gtcaatcttg 1440 ttgaactcac gagaaatgaa agagagccac agccatacgg atcagagcaa ttgcaagggt 1500 caggtgctag ggtgaggttc cctttgagtc ggctaatgag ggcgcacgaa atggtgcatg 1560 aggctcagtt cgaggtcaac tttaatcaca tcagaatagt gtgctcctct aaagccctgg 1620 tgcacttaag gcaatacctg atcagactgg gcaggttcaa attcatggaa ggcagagcaa 1680 tagaggacat acaagacatt caagaggggc ttgaactggg cctgatcaca gaagaagagg 1740 ctgaatcacg cctgctacca ccggacaaca tcgcacccag cgaagaagcc caagaagagg 1800 tgcagcaaag cggtcccatt gaagaggtga gtgaaaagtt catgggggca cgcaaattgg 1860 ttaaggagaa catttactct gaaaaactgc acaacagaga ggtggccttc tacagccggt 1920 acagcaagca gtacagttac aaagggggct cacaccactc actcggatgg gataaagctt 1980 tggatgagct catacaagag ttgggcctag atgagagcta tgaccactgt ctcattcaac 2040 ggtactctga gggtggcagt atcaatttcc acgccgatga tgagccctgc tatctaccag 2100 gaggaaccgt ggtgacggtg aatttgaatg gggaagcaat ctttgagttg aaggagaaca 2160 catcaggcaa aaccgagtca aaaagattaa aggatggtga tgtgttcaca atgggcgcag 2220 gaatgcagca aacccataaa cacaaggtca cctcactcac taacgggcga tgtagtatca 2280 ctctgaggaa caagacagtg gactacgagg caaggacgga ggcaatcaat tccgattacg 2340 aggaggatgt agcagcactg gacgagggaa ttgagtacct ccaaaagaat caagggaata 2400 tgtgctccct gaaggctttt gctgaacaca tgcaattgag cataccaagc gtgatctcaa 2460 tagtaaatgg cgcatcgcca caaacactga gagaaataga aggtggtggg atcagtgtcg 2520 cgacgcttgt gaatctctcg agggcgctgg acttcccgat cgccattcac ggagagagag 2580 gatatgctga aacgcctgga acatatagaa gactgcacct caagatcaca acagggcacg 2640 tggaaccatt cgatggagtc ataagtaagg gcggtcttaa ggaggccctg ttgctgagcg 2700 atggcgttgg aataggtcta ttcagagtgg acaaaaataa ggctgaccgc cttgcccaaa 2760 gtttctacaa cgggaacaca ggggtgcttc tgggaaagta caataaaggc aagatgcact 2820 cagagggcat agatgaacca aaggaggtgc tcaccgcttt cggatttgca ggttcaggga 2880 aaagtcactg gtgtcaaacc atacttaaac actgttccgt agagaaagcc ctcgttatca 2940 gcccacggaa ggtactcaaa gacgactgga cctcaaagat ctcaaagagg cacaaagtgg 3000 tgacattcga ggtggctttc atggatgatt atggctgcaa ggatgtggtt atcgacgaga 3060 tcgggttgct acctcctggg tacatcgatt tagtcattgc tgtgcataga ccacgtacac 3120 tggtgctcct gggggatcca ctgcaaagca cctaccacag caagcgtgac aacgtagtct 3180 tggaggccag tcaagaggac atctttgcca ggatcaaagg gcagctacca tacctctgct 3240 actcccaccg gctcccaaag aattgcagat tattcgagct agagtgcatg ggagcggaga 3300 gcgaaaagag ggtaacctat cgctcgagtc gcctcaagga cgagccggtc atctgcgcga 3360 ccagggccat gaaggaggaa aaagggtcag gctggtacac agtgagcgag acccaagggc 3420 taagcttcaa atcgtgtctc attcaccttg atgagcattg ggcgaagaaa gaggatgagg 3480 atgtgatggt ggccctgaca agatcaagag gggaaatagg cataaacgtc accaatgcac 3540 tcaagaagac gttgatcgcg agcgcaaaaa gtacgctgct caggaaggta ctcaaggggg 3600 agacatatag gcgttctgaa atcgttgcca tggcccgcaa gcatatacca gaagtcaccg 3660 ttctcttcga ggagagtagg ctagcagaaa atgtggatta tgaagctagg ttagctggtg 3720 atccatactt gaagtcactg ctctcactct atgatgagat tgaaatggac gaggtggaaa 3780 ttgaagaacc ggtcgctctg gaaccggtta aaacccatct cgcattgagt gagaagatga 3840 acgaactggc ccctttcgaa ttgaaggcca aagagtacag agagcagtac acggatgctg 3900 gaaggactga gcagatagac gaggaggggt atagcgggga agaggccaat ccgatgaccc 3960 acaaggcttt gtacctaaga cacacctctg atgacactgc cacgtttatg atgtctgtaa 4020 ggaagcgatt gcgcttcaga aactatgagg caaacagaag gaagtacaag gcatgtaatg 4080 gcatcggaaa gcagatgttc tcggtcttca aggagacata ccagttgaag gagatcgatt 4140 ccctacccga tctggagagg tgcgaaatgg aattcatgaa gaaacgcgtg gagaagagcg 4200 cgggtctaat agagcagcat gccgggcgta gtgacccaga ctggccaagc aactacctga 4260 agatctttct gaaacagcag acctgtacaa aaatggagaa acgcggcgtg gacgcaaagg 4320 cgggtcaaac catagcctgc ttcgcccact ccgtgctttg tagattcggc cctatactca 4380 gacagacaga aagggcactc agggaattgt taccggagaa tgtaatgata tactctcaga 4440 agaactacat ggacctggac aaatgggcca agacctgggt cgagagcatg atggggacgg 4500 attccgatta tgaggccttt gatcgatctc aagatgagaa agtgctagat ctagaggtag 4560 aagtgcttcg cttcttccta tggccggagg atttaatcag ggagtacgag gagcttaaac 4620 tgatgatggg gtgcgcactg ggtgatctag ccgtcatgcg gttttcgggc gagttcggga 4680 cattcttctt caacaccata tgcaacatgg tatttagctg catgcgctat catatggatc 4740 gcaacacccc aatatgtttc gctggggatg acatgtattc acctgggatc ctgaggacaa 4800 agaatgatta tgaggggact ctagaccaac tgactctgaa agcgaaagtg catatatctg 4860 aagagccatt gttctgtggt tggaggatga gccccttcgg gatagtgaag gagcccaatc 4920 taatcctgga tcgctggaag atcgcgaaaa gaagtggaaa tctgtcactc tgtctcgtca 4980 actacgcgat tgaggctagt tttgggtaca ggttaagcga gtacctgtat gatgttaata 5040 tagacgtcga tgctcagcaa gaactgataa gggagattgt ggaaaagaag cacctactgc 5100 cgaaaaagat agcagatctt ttcagtgagg acgagtgcga ggcgcacagc gatggcgacg 5160 aggacttttt gagtaatgac atcgcaaagt tgtacagagt tggttgagtt cttgagtcag 5220 ggtggtgata ggtgcagttt agatagaacg tcacttgagt ccttgtcgta tacacagtgt 5280 ctgtacttat tgtctgatct tagaggccta ggatatcaca gtatagatag catattacat 5340 atactggagt gtagcgaggc ggaacgtttc gaaatctatc gaatcttccg gaggcacgga 5400 atcgggattg gagaggcttt gcagctaggc gtgaggaaaa gtttgtgtta cagtccgaga 5460 agcaccgcag agatactgga cgacctcctg tccaggataa gcaggggagg tgccttccta 5520 ccaagtgacc tgggtgcagt gaaaggagaa cttttggtta cattccaacc gtccagatta 5580 agtgtagacc tctacgctaa taacaagaag gtgtgtacca ggacgtgtca aggcaaaggc 5640 gacgcaggtt atgtcgcacg gagattctca ggctacaaag ggctcgctct cagatcccaa 5700 ggaaattaag atattcaatg tcaagagaaa cacaaaggat ctcgagacac tgaacaagag 5760 cctccacagg ggagatgtgt acgacacgga gctaatagag cgtgtgtttc caagacgcac 5820 aaagaaatgc gtcgtgcaca aggagctagt cgttcaagat ggccgagtgg attgcgagct 5880 ggatctgatg gacgggggtt tggatgatat agatgagaca gaatacccgc tctaccacgt 5940 ggggtgtatc gtcatcgctt taatgccaca tggtaagaat ctccagggca aggtggttgt 6000 cgaggtgata gatacccggc tcaaggttgg gtcagggcgg atctctagga gcgtgatgga 6060 tatgtcgaaa cccttaagcg catgtgccga cttcccgggg tacttcatta gtacttccga 6120 tctgttgaac ggatacacgc tgcacctctc cataaccaca actgatctgc agtttgtgga 6180 cggcgtgcac ccattcagcg tacaactcat gaatatcggg cgtctctgcg gggatgacat 6240 gaagacaagg tatgcggtag gagaggcctc gaagatcctg catcagaaca tcctaaactc 6300 acaaggcgat ggcgagatga taccgcgtgg tgtgcaagtg caaaaagtac cagataccct 6360 agttatgcca gaagtttatg agacaataaa gagacttggg ttgaagacaa atggcacact 6420 acgccaagag ggtggagata agggcgatca tagaggaact ggtgctggcg aaagccacgc 6480 caactgagga cgcatccgaa agtggctacg accgaaatat gtacctgaat actctcttcg 6540 ggtacatcgc cttggtcggg acaagcaaga aggcggttca ttatggggag gtagatatag 6600 taggacctaa agctagcaag aaaacgggga tcgaccctcg cggaaagatg gttgtatcgg 6660 agctggtcgg cagaatgcgc actctgagcg tggcggttag tgagggacct gtaaaaggtg 6720 caaccttgag gcagatgtgt gagcctttcg cacagaacgc ctatgacttc ctcgtgctta 6780 tggcggagat gggcacctat tcacagctag gccacaaaga tacgaggtca ggctttaagg 6840 aaccacaggt tatgttcgac tttgcgtcgg gcttagattt gaaagcactg accctacaaa 6900 aagcccctgt gatacaggct atgcactcac gtctctttcg gacagaaggt gcaaaggggg 6960 tattcaacgc tcaatcatct gtcggtgagc aggctgtcga gatatagatg gatgacccat 7020 cgtttctcgc gggtaggtcc acgtttgcta aacgtaggcg cgctaggcgc atgaatgtgt 7080 gtaagtgtgg tgctataatg cacaataatg aggactgcaa gtccagtagt atttccggtc 7140 ataaactcga tagattgcgg ttcgtcaaag agggaagagt aactctaacg ggtgagactc 7200 ctgtttaccg gacttggatc agatgggttg agactgaata tcacatatat atattagaaa 7260 cctcagacga tgagaaatga tcgtctatcc tagctaataa gtgaataaca acataatggt 7320 aatgcgagct aggttgtcat actatgccaa aaaaaaaaaa aaaaaaaaaa aaaaaaaa 7378 //