ID AY237419; SV 2; linear; mRNA; STD; VRL; 7490 BP. XX AC AY237419; XX DT 28-FEB-2004 (Rel. 79, Created) DT 31-AUG-2006 (Rel. 89, Last updated, Version 6) XX DE Sapovirus Mc2, complete genome. XX KW . XX OS Sapovirus Mc2 OC Viruses; Riboviria; Caliciviridae; Sapovirus. XX RN [1] RP 5110-5485 RX DOI; 10.1128/JCM.42.3.1305-1307.2004. RX PUBMED; 15004104. RA Hansman G.S., Katayama K., Maneekarn N., Peerakome S., Khamrin P., RA Tonusin S., Okitsu S., Nishio O., Takeda N., Ushijima H.; RT "Genetic diversity of norovirus and sapovirus in hospitalized infants with RT sporadic cases of acute gastroenteritis in Chiang Mai, Thailand"; RL J. Clin. Microbiol. 42(3):1305-1307(2004). XX RN [2] RP 1-7490 RX PUBMED; 16485479. RA Hansman G.S., Takeda N., Oka T., Oseto M., Hedlund K.O., Katayama K.; RT "Intergenogroup recombination in sapoviruses"; RL Emerg. Infect. Dis. 11(12):1916-1920(2005). XX RN [3] RP 5110-5485 RA Hansman G.S., Maneekarn N., Peerakome S., Khamrin P., Tonusin S., RA Okitsu S., Nishio O., Ushijima H.; RT ; RL Submitted (17-FEB-2003) to the INSDC. RL Developmental Medical Sciences, Tokyo University, 7-3-1 Hongo, Bunkyo-Ku, RL Tokyo 113-0033, Japan XX RN [4] RC Sequence update by submitter RP 1-7490 RA Hansman G.S.; RT ; RL Submitted (13-JUL-2005) to the INSDC. RL Virology II, National Institute of Infectious Diseases, Tokyo, Japan XX DR MD5; 74bada45a3c1439e78bd47aaa614e7f6. DR EuropePMC; PMC1865854; 17267629. DR EuropePMC; PMC1933329; 17459935. DR EuropePMC; PMC2600344; 18598655. DR EuropePMC; PMC2725984; 17553282. DR EuropePMC; PMC2744225; 19624925. DR EuropePMC; PMC2795755; 19961620. DR EuropePMC; PMC2851512; 18258001. DR EuropePMC; PMC3291391; 16494732. DR EuropePMC; PMC3323275; 15504283. DR EuropePMC; PMC3367643; 16485479. DR EuropePMC; PMC3433708; 22973264. DR EuropePMC; PMC4498750; 26161646. DR EuropePMC; PMC553994; 15727685. DR EuropePMC; PMC5864949; 29567738. DR EuropePMC; PMC5964442; 29795788. XX CC On Jan 5, 2006 this sequence version replaced gi:33359664. XX FH Key Location/Qualifiers FH FT source 1..7490 FT /organism="Sapovirus Mc2" FT /strain="Mc2" FT /mol_type="mRNA" FT /country="Thailand" FT /note="SaV/Mc2/TH/2002" FT /db_xref="taxon:234600" FT CDS 14..6856 FT /codon_start=1 FT /product="polyprotein" FT /note="ORF1" FT /db_xref="GOA:Q6XDK9" FT /db_xref="InterPro:IPR000317" FT /db_xref="InterPro:IPR000605" FT /db_xref="InterPro:IPR001205" FT /db_xref="InterPro:IPR004004" FT /db_xref="InterPro:IPR004005" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR009003" FT /db_xref="InterPro:IPR014759" FT /db_xref="InterPro:IPR027417" FT /db_xref="InterPro:IPR029053" FT /db_xref="InterPro:IPR033703" FT /db_xref="UniProtKB/TrEMBL:Q6XDK9" FT /protein_id="AAQ17057.2" FT /translation="MASKPFYPIEFNRKVETTVLFSAHLRVSGREEIFETKQDMYAHVC FT QVVAWVRREIMRRTPVVSPAFSAEGLLDAFASKPPVDINPDTTFRELFGIDPHEQFPLS FT ITDLAKLQGELVDAAHNPGHILRRHYSTDSLTKLINKITKYVPVQATLTEMQARRAHER FT ERADLFKELPLVDPEVTQQQKSYFYAMWRQVVKKGKEFFIPLVKCTSWRKKFSEPAEIV FT RQLLVHFCEGMRTQFNTNANYINLSLLAKLRPTVLTMIFQQHKNTYRGWLATITALVEV FT YSNLFQDMRETAVSAVSAITLLFESLKQFVEGVIDLVRGTFQAQGPTNCGWAAIAAGVI FT LILLKISGCPSVMGYWQRLLKVCAGVTTIAAAARAFTWVRDIIVEAERKARLKKYMART FT AALLELAASRDVTGTEELKRLLECFTQLIEEGTELIQEFGTSPMAGLARSYVSELETAA FT NGIRSTILLDTPRKVPVAIILTGPPGIGKTHLAQHLAAGFGKTSNFSVTLDHHDSYTGN FT DVAIWDEFDVDAQGKFVETMIGVVNTAPYPLNCDRVENKGKVFTSNYIICTSNYPTSVL FT PENPRAGAFYRRVTTVDVSSPVIDDWKKKNPGKKPPLDLYKKDFSHLRLSVRPYLGYNP FT EGDTLEGVRVKPILTSVDGLSRLMETKFKEQGNELRNLWITCPRDLVTPAASGLKSYMA FT ANRALAQVFAEPSSNEIAETCTSRIFVSANNPPPTFVGRHVKITAINPWDASLANSMLS FT MFETNTHIPAVTQREIMYRVWTPLIHMQTREPNTQMLPYINRVVPVTSSFDFVRGLRHH FT LGLCSIKGMWKAYQGWHSSATILEFLSKHMEDVTFPSNPECTVFRAADGDVIFYTFGSY FT ACFVSPARVPFVGDPPKTVHSNITRNMTWIETLRLLVETITESLAHFGPLLLMVHNVAY FT LTTRSQRDEEAKGKTKHGRGARHARRGGVSLSDDEYDEWRDLVRDWRQDMTVGEFVELR FT ERYALGMDSEDVQRYRAWLQLRAMRLGAGAYQHATIIGRGRVEDTIIRTQPMRAPRAPR FT STGYDEEAPTPIVTFTSNGDHVGYGCHIGNGVVVTVTHVAAAADAVEGLEFSVRKTEGE FT TTWVNTPLGHLPHYQLGDGAPVYYSTRLHPVTTIAEGTYETPNITVHGFHLRIINGYPT FT KRGDCGTPYFDSCRRLVGLHAATSTNGETKLAQKVSRVSKVENAFAWKGLPVLRGPDCG FT GMPTGTRYHRSPAWPEQLSSETHAPAPFGAGDPRYNFSQVEMLVTGLKPYSEPTPGIPP FT ALLQRAATHTRTYLESIVGTHRSPNLTYNEACALLDRSTSCGPFIAGQKGDYWDEDRQC FT YIGVLAEHLGKAWDAANRGIAPQNAYKLALKDELRPIEKNQQGKRRLLWGCDAGATLVA FT TAAFKGIATRLQAVAPMTPVGVGINMDSYQVEVLNESLKGGVVYCLDYSKWDSTQHPAV FT TAASLAILERLSEATPITTSAVELLSSPARGHLNDIIFVTKSGLPSGMPFTSVVNSLNH FT MTYFAAAVLKAYEQHGAPYTGNVFQVETVHTYGDDCIYSLCPATASIFETVLANLSAFG FT LRPTAADKTDKIAPTHTPVFLKRTLTCTPRGIRGLLDITSIRRQFFWIKANRTTDISSP FT PAYDREARSVQLENALAYASQHGHAIFEEIAEIAKRTAQSEGLVLTNVNYDQALATYEA FT WFIGGTGTGQDSPSEETTKLVFEMEGLGQPQSQRDQQVMEQVVTPQDTIGPTSALLLPT FT QVETPNASAQRVELAMATGAVTSNVPNCIRECFAAVTTIPWTTRQAANTFLGAIHLGPR FT INPYTAHLSAMFAGWGGGFQVRVTISGSGLFAGRAITAILPPGVNPAAVQNPGVFPHAF FT IDARTTDPILINLPDIRPIDFHRVDGDDATASVGLWVAQPLINPFQTGSVSTCWLSFET FT RPGPDFDFCLLKAPEQEMDNGISPANLLPRRLGRSRGNRLGGRVVGLVVVAAAEQVNHH FT FGANSTTLGWSTLPIEPIAGAVSWYDDNNEHTKIRGLLSAQGKGIIFPNIVNHWTDVSL FT SAKTSGQTTIPIAADNLNNSPGAAGPVVMFENNGDVNESTANHGILTAASHDFTSLSQT FT FDAAGLWVWMPWTRNKPDGRTNTNVYITPTWINGNPARPIHEKCTNMVGTNFQFGGTGT FT NNIMLWQEQHFTSFPGAAEVYCSQLESTAEMFQNNVVNIPANQMAVFNVETAGNTFQIG FT ILPNGYSVTNAAIGTHQLLDYETSFRFVGLFPQSTSLQGPNGNAGRAVRFLE" FT CDS 6856..7401 FT /codon_start=1 FT /product="ORF2" FT /db_xref="InterPro:IPR008437" FT /db_xref="UniProtKB/TrEMBL:Q2NNR3" FT /protein_id="ABC58768.1" FT /translation="MSWFTGAALAAGSVVDMAGTISSIVAQHRQLDLMAQANRIQQDWV FT NRQEALITRGQDISRDLAVNGTAQRVDSLVKAGFTPVDARRLAGGTESVQYGLLDRPIL FT QRSVLSGISETRHLQSVQGALSAFKHGSSYGSSSRPRGPRQPKLSGFTTKVNTRPQTPS FT DKCVVMIRFPKIIKFPFI" XX SQ Sequence 7490 BP; 1856 A; 2045 C; 1876 G; 1713 T; 0 other; gtgattggtt ggtatggctt ctaagccatt ctacccaatt gagttcaacc gtaaggttga 60 aacaacagtc ctcttctctg cccacctcag ggtgagcggg agagaggaaa tttttgaaac 120 caaacaggac atgtacgccc atgtttgcca agtggtcgcc tgggtgcggc gcgagataat 180 gcgtcgcacc ccggtggtca gccccgcttt cagtgcggag gggctcctag atgcctttgc 240 atccaaaccc ccagtggaca ttaaccctga caccacattt cgtgagttgt ttggaataga 300 tccacatgaa caattcccat tgtccatcac tgatttggcc aagctacagg gtgagctagt 360 ggatgcagcg cacaacccag gtcacatcct gcgtcgtcac tactccaccg attcgctcac 420 caaactaata aacaaaatca ccaagtacgt ccccgttcaa gctactttaa ctgagatgca 480 agcacgaagg gcgcacgaga gggaacgagc ggacctattt aaggaactgc cgttggtcga 540 tcctgaagtg acccagcaac agaagtccta cttttacgcc atgtggcgac aagtggtaaa 600 gaagggcaag gagtttttca tacccctggt aaagtgtaca tcatggagga aaaagttctc 660 agaaccagct gagattgtgc gccaactcct tgtgcacttt tgtgaaggca tgcgcacaca 720 atttaacaca aatgccaatt acatcaatct gtccctcctg gcaaaattgc gacccacggt 780 tttgacaatg attttccaac agcacaaaaa cacttaccgt ggttggctcg ccaccatcac 840 agcccttgtt gaggtctatt caaatttgtt ccaggacatg cgtgaaaccg cagtgtccgc 900 ggtgtccgca atcacgctcc tttttgagtc attgaagcag tttgtggaag gagtcattga 960 tcttgtcaga ggcactttcc aggcacaggg ccccacgaac tgtgggtggg ccgccattgc 1020 cgctggtgtt attctaatcc tcctcaagat ctccggctgc cctagtgtta tggggtattg 1080 gcagcgcttg ttaaaagtgt gtgccggtgt cacgaccata gctgcagctg cgagagcgtt 1140 cacctgggtt cgtgacatca ttgtggaggc ggaaagaaag gctcgcctca agaaatacat 1200 ggcccgcacc gctgccttgt tggaacttgc tgcatcgcga gatgtcactg gcacggaaga 1260 actgaaacgg ttgctagaat gttttaccca gctcattgag gagggcacgg agctgattca 1320 ggagtttggg acatcaccaa tggcagggct tgcacgatct tatgtcagtg agcttgaaac 1380 tgccgccaat ggtatcagaa gtacaatcct cttagacacc ccaaggaagg tcccagtggc 1440 aataatctta actggtccac cgggtatagg gaaaacacac cttgcacagc acttagccgc 1500 tggttttggc aaaacatcaa acttctctgt cacacttgat caccatgact cctacacagg 1560 caatgacgtg gccatctggg acgagtttga tgtggacgcc cagggtaagt ttgtggagac 1620 aatgattggt gtggtgaaca ccgcaccata ccccttaaat tgtgacagag tggaaaataa 1680 aggcaaagtc tttacatcta attacattat atgtactagc aattacccca cctctgttct 1740 gccagaaaac ccgagggctg gagcctttta ccgccgcgtc acgacggtgg atgtgtcatc 1800 ccctgttatt gatgattgga aaaagaaaaa ccctggtaag aaacctccat tggacttata 1860 caagaaagat ttctcacatt tgcgcctttc cgtccggcca taccttggtt acaatcccga 1920 gggggacact ctggagggcg ttcgtgtgaa acctatccta accagtgtgg acggcctgtc 1980 ccggctcatg gaaactaagt ttaaggaaca gggcaatgag ttgcgcaacc tttggatcac 2040 gtgcccccgt gacctagtga cacctgcagc atctgggctg aaatcataca tggctgctaa 2100 cagggcgctg gcacaagttt tcgcagaacc ctcttccaac gaaattgcgg aaacgtgcac 2160 gtctagaatt ttcgtgtctg ccaataaccc tccccccacc tttgtgggca gacacgtgaa 2220 aataacagcc atcaacccct gggacgcatc ccttgctaac tcaatgttgt caatgtttga 2280 gaccaacact cacataccag cagttaccca aagggagatc atgtaccgtg tctggacgcc 2340 cctaatacac atgcaaacac gggaaccaaa tacccagatg ctcccctaca tcaatcgggt 2400 ggtgccagtc acctcttcat ttgactttgt tcgtgggttg cgccaccacc ttggattgtg 2460 ttctatcaaa ggcatgtgga aggcgtacca gggatggcat agctccgcga caatcctgga 2520 gttcctgtcc aagcacatgg aggatgttac attcccctcc aatccggaat gtactgtgtt 2580 tcgagctgcg gatggagatg tcatctttta tacatttggg tcctatgcct gctttgtctc 2640 cccagcacgg gttccatttg tcggggaccc accaaaaacc gtccactcca acatcacacg 2700 caacatgacg tggattgaaa ccttgcgtct gcttgttgaa acaatcacgg agagtttggc 2760 ccactttggc ccgctgctgt tgatggttca taacgtggca tacttgacaa ctaggtcaca 2820 acgtgacgag gaggccaaag gcaaaactaa acatggtagg ggagccagac acgcacgacg 2880 cggtggagtg agcttgtcgg atgacgagta tgatgagtgg cgtgaccttg tgcgtgactg 2940 gagacaggac atgactgttg gggagtttgt tgagttgcgc gagcgctacg cccttgggat 3000 ggactcagag gacgtgcaac ggtaccgggc atggctgcaa cttcgtgcca tgcggctagg 3060 tgcaggtgcc taccagcatg caaccatcat tgggcgcgga cgtgttgagg ataccatcat 3120 ccgcacacag cccatgcgtg ccccacgtgc tcctcgttcc accggatatg atgaggaagc 3180 cccaacaccg attgtcactt ttaccagcaa cggggaccat gtgggttacg gttgccacat 3240 tggcaacggt gtggtggtga cagtaactca tgtggctgcc gctgcggacg ccgtggaggg 3300 tctggaattc tcggttagga aaaccgaggg tgaaaccaca tgggtgaaca ccccccttgg 3360 ccacctgcca cactaccaac tgggtgatgg ggcaccagtt tactactcaa ctcgattgca 3420 ccccgttacc acaattgcag aaggtacata tgaaactcct aacatcacag ttcatgggtt 3480 ccatcttcgc atcatcaatg gttaccccac aaagcgtgga gactgcggca cgccatactt 3540 cgactcatgt cgaaggctgg tgggcctaca tgccgccacg tcaaccaatg gggagaccaa 3600 gttggcacag aaagtgagtc gagtttcaaa ggtggaaaat gcttttgcct ggaagggctt 3660 gcctgtctta cgaggccctg attgtggtgg tatgcccaca ggaacaaggt atcatcggtc 3720 cccagcctgg ccagaacaac tctccagtga aacccatgcc ccagccccat ttggtgccgg 3780 tgacccccgt tacaatttct cccaagtaga aatgttggtc acagggttga aaccttattc 3840 agaacccacc cctgggatac cccctgccct cctgcagcgg gcagccacac acacccgtac 3900 atacctggag tcaatagtcg gcacacaccg atcccctaat ttaacttaca acgaagcatg 3960 tgccttgttg gaccgcagca catcttgtgg tccgttcatt gcaggccaaa agggggatta 4020 ctgggatgaa gatcgccaat gttatatagg agtgttggct gagcacctcg gtaaggcctg 4080 ggatgccgcc aaccgaggca ttgctccaca aaatgcctac aaactggccc tcaaagatga 4140 gcttcgacca attgaaaaga accaacaagg caagcgccga ctgttgtggg gttgtgacgc 4200 tggggcaact ttggttgcca cagcagcttt caaagggata gctacgcgcc tgcaggcagt 4260 tgcacctatg acacctgttg gcgttggcat caacatggac agttaccagg tggaggtgct 4320 caatgaatcc cttaagggcg gtgtcgtata ctgcctagac tacagcaagt gggattccac 4380 tcaacacccg gccgtcacag ctgcgtcctt ggcaatcctt gagcggctgt ctgaagcaac 4440 accaataaca acatcggccg tagagttgct ctcatcaccg gcacgtggcc atttgaatga 4500 catcatcttt gtgacaaagt ctggactccc ctcgggcatg ccatttacca gtgttgtcaa 4560 ctctcttaac catatgacat actttgctgc tgcagtgttg aaggcctatg aacaacatgg 4620 ggcgccttac actggcaatg tgtttcaggt ggaaactgtt cacacatatg gtgatgattg 4680 catttactcc ttgtgcccgg caaccgcttc catctttgaa actgttttgg ccaacctcag 4740 tgcctttggt ctacggccca ccgctgccga taaaacagac aaaatagccc ccacccacac 4800 accagtcttt ttaaagcgaa ctcttacctg tacaccaaga ggtatccgtg ggctactcga 4860 catcacgtca atcaggcggc aattcttctg gattaaggct aaccgcacca cagacatatc 4920 atccccaccc gcctacgaca gggaagcccg gagtgtgcag cttgaaaatg ccctggctta 4980 cgcttcacaa catggccacg caatctttga ggagattgcc gaaattgcca agaggacggc 5040 acagtcagaa gggctggtgc tcaccaatgt gaactatgac caggctctcg ccacctacga 5100 agcatggttt ataggtggta caggcaccgg tcaagatagc cccagtgaag agactaccaa 5160 attagtgttt gaaatggagg gcttgggcca gccacagtcc caaagggacc aacaggttat 5220 ggaacaggtt gtcacccccc aggacaccat tggaccaacg agtgcacttc tattgcccac 5280 tcaagttgag acaccaaatg ctagtgctca gcgtgtggaa cttgcaatgg ctacaggggc 5340 agtgaccagc aatgtgccca actgcatccg ggagtgtttt gctgcggtca ccacaatacc 5400 atggaccacc cggcaagcag caaacacctt tctcggtgcc atacatctgg gcccacgcat 5460 taacccctac actgcacacc tgagtgcaat gtttgctggt tggggggggg gctttcaggt 5520 gcgggtcaca atctcaggtt ccgggctctt tgctggccgg gccattactg ctatcctgcc 5580 accaggtgtc aacccggctg ccgtccagaa cccgggtgtc ttcccccatg cgttcattga 5640 cgctcgcaca accgacccca tactgatcaa tttgcccgat atccggccca ttgattttca 5700 ccgtgtagat ggggacgacg cgacagcgtc tgtggggtta tgggtcgcgc agcccttgat 5760 caacccgttc caaactggct ccgtttccac atgttggctc agtttcgaaa cacggcctgg 5820 ccctgacttt gacttttgtc tcctcaaggc ccccgagcag gaaatggaca atgggatatc 5880 acctgccaac ctgttgccac gccgcctcgg gcgttcccgg ggcaaccgcc tcggcggtcg 5940 tgtcgtgggg ctggttgtgg tggctgcggc cgagcaagtc aatcaccact ttggcgcaaa 6000 ctccaccaca cttggttggt caacactgcc tattgagcca attgcgggag cagtttcttg 6060 gtacgatgac aacaacgaac ataccaaaat acgggggctc ttgagcgcac aaggaaaagg 6120 tatcatcttc ccaaacattg tcaatcactg gacagatgtg tcattgtccg ccaagacctc 6180 ggggcagacc accatcccca tagctgctga caacctcaac aacagccctg gggcagcagg 6240 cccggtggtt atgtttgaaa acaatgggga tgtcaatgag tccactgcaa accatggcat 6300 actaaccgct gcgtcgcatg acttcacatc tctgtcccaa actttcgatg cagcagggct 6360 gtgggtttgg atgccatgga cccgaaacaa accagacggg cgcacgaaca caaatgtcta 6420 catcactcca acttggatta atggcaaccc tgcccgcccc atacacgaga aatgcaccaa 6480 catggtcggg accaatttcc aattcggtgg tactgggaca aacaacatca tgttatggca 6540 ggagcaacac tttacatctt ttccaggtgc tgcagaggtg tactgttcac aactggagag 6600 cacagcagaa atgtttcaaa ataatgtggt caacatcccc gcaaaccaaa tggcagtctt 6660 caatgtggaa actgcaggta acacatttca gattgggatc ttgccaaatg gctattcagt 6720 caccaacgcg gcaattggca cacaccaact ccttgactac gagaccagtt ttagatttgt 6780 tggacttttc ccccaaagca cttcacttca ggggcccaat gggaacgctg gacgggccgt 6840 caggttctta gaataatgtc ttggtttact ggagcagcct tagccgccgg ctctgtcgtg 6900 gacatggccg gcacaatatc ttcaattgtt gcacaacaca gacaacttga tttgatggca 6960 caggcaaatc gcatacaaca ggattgggta aacagacaag aggcactcat cacacgagga 7020 caggacatct cccgcgacct tgctgtcaat ggaacggcgc aacgcgtcga ctcgctggtc 7080 aaggcggggt tcacccctgt tgatgctcgc agactggcgg gcggcacgga aagcgtgcag 7140 tacggcctgc tggacagacc tatactgcaa cgttcagtgt tgtcgggcat ctcagagact 7200 cggcacttac aatctgtaca aggtgccttg agtgctttca aacatggatc cagctacggg 7260 agctcctccc gcccccgcgg gcctcgtcaa cccaaattat caggcttcac caccaaagtt 7320 aacactaggc cccagacccc cagtgacaaa tgtgtagtga tgattaggtt tcctaagata 7380 atcaaatttc catttattta gtttcctttg cttttctttt cttttcccat ggtaccacac 7440 gcgttcgggt ggataattgt ggttaagcga ccacagccat gaccctctgg 7490 //