ID AY236971; SV 1; linear; genomic RNA; STD; VRL; 5899 BP. XX AC AY236971; XX DT 01-MAY-2003 (Rel. 75, Created) DT 16-APR-2005 (Rel. 83, Last updated, Version 3) XX DE Sugarcane yellow leaf virus, complete genome. XX KW . XX OS Sugarcane yellow leaf virus OC Viruses; Riboviria; Luteoviridae; Polerovirus. XX RN [1] RP 1-5899 RA Gaur R.K., Rao G.P., Singh M.; RT "Molecular characterization of sugarcane yellow leaf luteovirus of RT sugarcane of Indian isolate"; RL Unpublished. XX RN [2] RP 1-5899 RA Gaur R.K., Rao G.P., Singh M.; RT ; RL Submitted (14-FEB-2003) to the INSDC. RL Plant Pathology, Sugarcane Research Station, Kunraghat, Gorakhpur, UP RL 273008, India XX DR MD5; ab3c31104cd1657973ab43604ff346fb. XX FH Key Location/Qualifiers FH FT source 1..5899 FT /organism="Sugarcane yellow leaf virus" FT /mol_type="genomic RNA" FT /country="India" FT /db_xref="taxon:94290" FT 5'UTR 1..66 FT misc_feature 67..837 FT /note="nonfunctional ORF0 protein due to mutation" FT CDS 243..2195 FT /codon_start=1 FT /product="multifunctional protein" FT /note="ORF1" FT /db_xref="GOA:Q80FH9" FT /db_xref="InterPro:IPR000382" FT /db_xref="InterPro:IPR009003" FT /db_xref="InterPro:IPR018019" FT /db_xref="UniProtKB/TrEMBL:Q80FH9" FT /protein_id="AAP21786.1" FT /translation="MAPTLPFTTGWSTFALLLSLWCLFCSCQTQPLDGTSILRDSTSSL FT SFYGLPATNSTIELRDAVPSGMYSSKITSAPNFSELSYSSMLGWMFFKMWRDCKTFSRE FT ATTLSDRFLEYTFSNTKGLLVEFLNNLLWNLIKLYVYAFTIITRLIMTMTILAWKPILI FT ICLLVVLTSMVYHLMRKLFSFIQIWWVVAPILMLYRTVTYIHRRLFASRGDEKMVQGFK FT SFAVPMSPPGHSVLEIVHPDDSHMGYASCVRLKNGEEALMTSVHCISDSFKVRSFRNGI FT KIPLTQFQVLLPANAMDIVLLRGPPEWKSILGAKAAHFTPVNQLNKGAVSFFIFDKEWM FT MHNAKVTGTDGFYATVLSNTEKGYSGAPYWNGKSIVGVHKGHVYGDDSKNYNLMSPIPP FT VKGLTAPNFVYESPSLQGDVFSDADVSDIADYAEEVYEKTLAEPKVWKPASGKYWWEMA FT EEEDDFVVEAKSPPPDKPVENATAKEQTPASTVEKAMVADQPTPDQGNEPSGADHLKTP FT ESTPLKQDESTKELLNNIVSQLIQKIDLSSIATRVEEKLLRQAQNKQQQNGGKKSPRKR FT KTSNTSSKPHTNGKSPPVTSQGSGNAANSPRYTIPQNRRAHNGESASSQSTQKWRPKSP FT VSGGPPSAPKPKRQV" FT CDS <1736..3454 FT /codon_start=1 FT /product="RNA-dependent RNA polymerase" FT /note="ORF2; produced by predicted -1 translational FT frameshift of ORF1" FT /db_xref="GOA:Q80FH8" FT /db_xref="InterPro:IPR001795" FT /db_xref="InterPro:IPR007094" FT /db_xref="UniProtKB/TrEMBL:Q80FH8" FT /protein_id="AAP21787.1" FT /translation="SADSRPGKRAKWRRPLKNTGIHPAQARRIYKRVAQQHRLAVDSKD FT RPELHCNEGGGETAASGPEQTAAERREEVAQKTQDLEHFFQAAYKWEESTSDIPGFRKC FT GKLPALYHPPKPKSTQWGERIISEHPEMASKVAGFGWPSFGAQAEETSLRLQAARWLKR FT AESAEKPTEKQRKLVIDRVVKAYEPCRTNAPHTSSSGSLIWSDFLKDFNEAVNSLELDA FT GIGLPYKLLHKDTHRQMVEDPKFLPLLTRLTWNRLQKMSQVDFQEMTPEQLVREGLCDP FT IRLFVKGEPHKQAKLDEGRYRLIMSVSLVDQLVARVLFQAQNKREIALWRAIPSKPGFG FT LSTDREAREFIESLSKTVGCSPAEVIHGWRDKIVPTDCSGFDWSVADWMLEDDMEVRNX FT LTINNNELTRRLRACWLKCITNSVICTSGGVLYAQTHPGVQKSGSYNTSSSNSRIRVMA FT AFHCGADWAIAMGDDALESPNSNINAYQKLGFKVEVASQLEFCSHVFEQEDLARPLNVN FT KMLYRLIFGYNPACGNAEVLCNYLQAVASVLNELRHDPQLVATLHEWLVPGAATK" FT CDS 3649..5679 FT /codon_start=1 FT /transl_except=(pos:4237..4239,aa:OTHER) FT /product="putative aphid transmission factor" FT /note="ORF5; produced by translational readthrough of TAG FT stop codon of ORF3" FT /db_xref="GOA:Q80FH7" FT /db_xref="InterPro:IPR001517" FT /db_xref="InterPro:IPR002929" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:Q80FH7" FT /protein_id="AAP21790.1" FT /translation="MNTGANRSRRNVRRRANRRRQTRPVVVVRAPPGPRRVRRRRARVG FT GNAVRGPGGRSNRDVLTFTVDDLKANSTGILKFGPNLSQYAAFNNGLLKAYHEYKITSL FT TIQYNSCSSDATPGAIALEVDTSCSQTTTGSKITSFPVKRNAKKVFPAPFIRGKDFMTT FT SADQFWLLYKGNGDSSLAGQFVCRFECLFQNPKXVGDAPPTPTPTPTPPAPTPAPAPKY FT FGYQGVPNNIVKTRGNSEYLDVGPLENVTMYLWKDESWSIEQLSAGYRVNNRERAIPFV FT LFPVDKGKYSVFIQCEGFKAVKAKGGTNDGKMSGFLCDNANLAGWRAYAYSGCTISNYR FT TSDSNVPGHPDMKVNGGSFTDQLVERDFSCSFHLEVPQQGYFGLEAPPIEKSDHFNFVV FT SYANFTDKILEWGSISVAIDEVNDGAYSRSKWDKTTAMSARLPTQVSAPSEVYTPEAPE FT QPTNEGTESMPPAPNPALGPDNPATKEPTPKIVDNPDPKVLNWLNNQRDKPVVEEVLRE FT SPIYAPPPPPSLVPTHADTLRQADKVRRALMANASRSASPPPTNTEVPVLGATDTASLS FT GSLRGGSLRGNLGSRPSLPRVADSPPRSVSPARSETSTLQGGSLSGGSLRGGNLQALPE FT ATREQRREYERLKNSQGKTVAKAHAKEHGYKPPKSSSSLFG" FT CDS 3649..4239 FT /codon_start=1 FT /product="capsid protein" FT /note="ORF3" FT /db_xref="GOA:Q9QQN7" FT /db_xref="InterPro:IPR001517" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:Q9QQN7" FT /protein_id="AAP21788.1" FT /translation="MNTGANRSRRNVRRRANRRRQTRPVVVVRAPPGPRRVRRRRARVG FT GNAVRGPGGRSNRDVLTFTVDDLKANSTGILKFGPNLSQYAAFNNGLLKAYHEYKITSL FT TIQYNSCSSDATPGAIALEVDTSCSQTTTGSKITSFPVKRNAKKVFPAPFIRGKDFMTT FT SADQFWLLYKGNGDSSLAGQFVCRFECLFQNPK" FT CDS 3680..4132 FT /codon_start=1 FT /product="putative movement protein p17" FT /note="ORF4" FT /db_xref="InterPro:IPR001964" FT /db_xref="UniProtKB/TrEMBL:Q9WI47" FT /protein_id="AAP21789.1" FT /translation="MSEDALTVVDRLGQWSWSGLPQDLDEYDDVEHVLEETLCEDREEE FT ATGMFSLSRLTISKPTQPGSSNSDRTYLSTQRSTMAYSKPTMSIKSQVSLFSITHAPPT FT QLQVQSHLKWIHPAPKQQQAPRLLASPSRGTPRKSSRPPSSGGKIS" FT 3'UTR 5680..5899 XX SQ Sequence 5899 BP; 1575 A; 1539 C; 1416 G; 1360 T; 9 other; acaaaatata tcgggaggga aacccctgat atatttggac caagcctctg acttgtaaac 60 tgctctatgc ttttcaacga attctctgtt gagggaatta taattcagag cacacgaaag 120 cacttcaccc gtctttcgtg gggaggtttc caggtgtttg acctactaca gagtcttcgc 180 ctgcaagtgg gttgagttga cctatcaaga tccactcaca cgccatttag tacaaaatta 240 ctatggcccc aacactcccg tttacaactg gctggagcac attcgcctta ttgttgtcac 300 tatggtgcct attctgctcc tgccagacac aaccattgga cggcacatcc atattaagag 360 acagtacctc cagtctgtcc ttttatggct tgcccgcaac aaactctact atagagttaa 420 gagatgccgt tccaagcggt atgtactcga gcaagatcac atcggccccg aacttttccg 480 aactcagcta ctccagtatg ctgggttgga tgtttttcaa gatgtggcgc gattgcaaga 540 ctttctcgag agaggctacg acactttccg atcggttctt ggagtacacc ttctcgaaca 600 cgaaaggttt gttagtcgaa ttcttgaaca acctgttatg gaacctgatc aagctgtacg 660 tttatgcttt cactatcata acgcgcttga tcatgacgat gacgattctg gcctggaaac 720 cgattttgat aatctgtctc ttggtcgtcc ttacatcaat ggtctaccac ctaatgagaa 780 aattattttc attcattcaa atttggtggg tcgtagcacc tattctcatg ttatatagga 840 ccgtcacgta cattcacaga aggttgttcg cttcacgtgg ggacgagaaa atggtccaag 900 gtttcaaaag ctttgccgtc cccatgtcac caccaggaca ctcagtgctt gagatagtac 960 accccgatga ttctcacatg ggatatgcat cctgtgttcg attgaaaaac ggggaagagg 1020 ctctcatgac atccgttcac tgcataagcg attctttcaa ggttcgctcg ttcaggaatg 1080 gtatcaagat ccctctaacg caattccaag tgctgttgcc cgccaatgcg atggacattg 1140 ttcttcttcg aggcccacct gagtggaagt ccatccttgg agccaaagca gcccacttca 1200 ctccagtcaa ccagctcaac aaaggggctg tgtctttctt cattttcgac aaggagtgga 1260 tgatgcacaa cgcaaaagtt acaggaactg atggttttta tgccacagtt cttagtaaca 1320 ctgagaaggg ctacagtggc gccccctact ggaatgggaa atctatagta ggggtgcata 1380 aagggcacgt gtacggagac gattccaaga attacaatct tatgtcgccg attccccctg 1440 tcaaggggtt aacggcgcct aattttgtgt atgagtctcc gtctctgcaa ggagatgtct 1500 ttagcgacgc cgacgtttca gacattgctg attacgccga ggaggtgtat gagaaaaccc 1560 ttgcagagcc taaagtgtgg aaacctgcca gcggcaaata ctggtgggaa atggctgaag 1620 aagaggatga ttttgtcgtt gaggcaaagt cacctccccc tgataaacct gttgagaacg 1680 ctacagcaaa agagcagact ccagcttcga ctgtcgagaa agctatggtt gctgatcagc 1740 cgactccaga ccagggaaac gagccaagtg gcgccgacca cttaaaaaca ccggaatcca 1800 ccccgctcaa gcaagacgaa tctacaaaag agttgctcaa caacatcgtc tcgcagttga 1860 ttcaaaagat cgacctgagc tccattgcaa cgagggtgga ggagaaactg ctgcgtcagg 1920 cccagaacaa acagcagcag aacggaggga agaagtcgcc cagaaaacgc aagacctcga 1980 acacttcttc caagccgcat acaaatggga agagtccacc agtgacatcc cagggttcag 2040 gaaatgcggc aaactccccg cgctatacca tcccccaaaa ccgaagagca cacaatgggg 2100 agagcgcatc atctcagagc acccagaaat ggcgtccaaa gtcgccggtt tcgggtggcc 2160 ctccttcggc gcccaagccg aagagacaag tctgagactc caagcggcac gctggcttaa 2220 acgagctgag tcagcggara agccgacaga aaaacaacgc aagctcgtca ttgatcgtgt 2280 ggtyaaggca tatgaaccgt gtagaacyaa tgccccacac accagctcct ctggcagcct 2340 catctggtcc gacttcttga aagatttcaa cgaggctgtc aactcactag aactcgacgc 2400 aggaataggt ctcccataca aacttcttca caaagacacc catcgtcaga tggttgaaga 2460 ccccaaattc ctgccgctcc tgacgcgatt gacctggaac cgtttacaga agatgtccca 2520 ggttgatttc caggagatga ctcctgaaca actagtgagg gaaggattgt gcgatccgat 2580 tcgtttgttc gtcaaaggag aaccgcacaa gcaggcgaag cttgatgaag ggcgctaccg 2640 cctcatcatg tcagtctcgc tggtagatca actggtagcc cgggttttgt ttcaagcaca 2700 aaacaaaaga gagatagctt tgtggagagc tatcccttca aagcccggtt tyggcttatc 2760 cacagacagg gaagcacgcg aattcatyga atccctgtcc aagacagtag ggtgttcccc 2820 agcagaagtc attcatggct ggagggacaa gatcgtaccc accgactgtt ccggttttga 2880 ctggtcagtc gccgactgga tgctcgaaga cgacatggaa gtgagaaaty ttctcacwat 2940 caayaacaac gagctaaccc gccgcctcag ggcgtgctgg ttgaagtgca tcacaaactc 3000 tgtgatttgc acrtccggcg gtgtcttgta cgcccaaact catcctggag tgcaaaaatc 3060 tggatcttac aacacgagtt catccaattc caggattcga gtaatggccg cttttcattg 3120 cggcgcagat tgggcgatag ccatgggaga cgatgcactt gagtctccaa actccaacat 3180 caacgcgtat caaaagttgg ggtttaaagt cgaggttgcc tcacagctag aattttgctc 3240 acacgtcttt gagcaggagg acctcgccag gccgttgaac gtaaacaaaa tgctttatcg 3300 tttgatcttt ggatacaatc cggcctgtgg caacgcggag gtattgtgca attacctcca 3360 agctgtggct tctgttctca acgagcttcg ccatgatcca cagctagttg ctaccctcca 3420 tgagtggctg gtccctggcg ccgccacaaa ataaatacgg tggggcatcc cgagccacca 3480 tataggttgc aagagtggaa cgggaagtcc tatagataag ccgcgcgatt ctggattaca 3540 aacttctagc gggagttctc atcggtgttc tcatcgcaat tcccctagtg atcatagcgg 3600 cttacctgat attcctcaaa atcagtgcac acatccgagc gatagtgaat gaatacgggc 3660 gctaaccgct cacgaaggaa tgtcagaaga cgcgctaacc gtcgtagaca gactcggcca 3720 gtggtcgtgg tccgggctcc cccaggacct agacgagtac gacgacgtag agcacgtgtt 3780 ggaggaaacg ctgtgcgagg accgggagga agaagcaacc gggatgttct cactttcacg 3840 gttgacgatc tcaaagccaa ctcaaccggg atcctcaaat tcggaccgaa cttatctcag 3900 tacgcagcgt tcaacaatgg cttactcaaa gcctaccatg agtataaaat cacaagtctc 3960 actattcagt ataactcatg ctcctccgac gcaactccag gtgcaatcgc acttgaagtg 4020 gatacatcct gctcccaaac aacaacaggc tccaagatta ctagcttccc cgtcaagagg 4080 aacgccaaga aagtcttccc ggcccccttc atcaggggga aagatttcat gactacgtca 4140 gctgaccagt tttggttgct gtacaaaggg aatggagact cgagcctagc aggacaattc 4200 gtctgccgat ttgaatgcct tttccagaat cccaaatagg taggcgacgc tcccccaaca 4260 cccaccccaa caccaacccc acccgctccg accccggcac cggctcccaa gtattttgga 4320 taccaaggag tgccgaacaa catcgtgaaa acaagaggaa actctgaata tctagatgtg 4380 ggtccgctcg aaaatgtgac catgtatctt tggaaagacg aatcgtggag cattgagcaa 4440 ctgtcagccg gatatcgcgt taacaatcga gaacgtgcca taccctttgt cctctttcca 4500 gtggataaag gtaaatactc cgtgtttata caatgtgagg gctttaaggc agttaaagcc 4560 aaaggaggca cgaacgacgg caagatgagc gggtttcttt gtgacaatgc aaatctcgcg 4620 ggttggcgag catacgcata tagtgggtgt acaatctcta attatagaac atcggactct 4680 aatgttcctg gtcatccgga catgaaagtc aatggtggat cttttaccga ccaattggtc 4740 gagagagatt tttcttgttc atttcacctt gaggtgcctc aacaaggcta ttttggctta 4800 gaggccccac ccattgaaaa gagtgatcat ttcaattttg tggtgtctta cgctaacttc 4860 actgataaaa tcctggaatg gggttcaatc tctgtagcga tagacgaggt gaatgacgga 4920 gcgtatagta gatcaaaatg ggataagact actgcaatga gtgctcgttt gccgactcag 4980 gtgagcgccc cctctgaggt ttacaccccg gaagcacctg aacaaccgac taacgaaggg 5040 acggagagta tgcctccagc cccgaacccg gcactgggac cggacaaccc agcaaccaaa 5100 gaacccacgc ccaaaatcgt ggataatccg gacccaaagg tactcaactg gcttaacaac 5160 cagcgagata aacctgtggt ggaagaggtt ttgcgtgaat ctccgattta tgctcctcca 5220 ccccccccgt ctctagtccc gactcatgcc gacactttaa gacaggcgga taaggtccgg 5280 agagctctca tggctaacgc ttcacgttca gcctcacctc cccccacgaa caccgaagtt 5340 cctgttcttg gagccactga caccgcttct cttagtggat cattacgcgg tggctccctc 5400 aggggtaatt tgggttctcg cccctctctt ccgagggtcg ctgacagccc tccccgttct 5460 gtaagtccgg ctcgttccga gaccagcact ttacagggcg gttccctgag cggtggttct 5520 ttgagaggtg gtaacctcca ggctttgcct gaggccacaa gagagcaaag gagggaatat 5580 gaacgtctca agaattcaca agggaagacg gtagcaaaag cccatgctaa agaacacggt 5640 tacaagccac cgaaatcttc ctcctccttg tttggttgag tgtcgagcca ctataacgct 5700 ccccgccccg ggacacggga ctccaatcat gagtttaaac tgagctcttt ccacgagcct 5760 aaactggaga actccgcaaa gttctaaaac tatgcagatg ggctagcgac ccagctcttc 5820 cattgatttt caggatcttt ggaagcccaa gctaaagggg tggaatacag ggaggcactg 5880 cctcccgtat atcctagta 5899 //