ID AY225449; SV 1; linear; genomic RNA; STD; VRL; 6956 BP. XX AC AY225449; XX DT 31-DEC-2003 (Rel. 78, Created) DT 31-DEC-2003 (Rel. 78, Last updated, Version 1) XX DE Narcissus mosaic virus strain New Zealand, complete sequence. XX KW . XX OS Narcissus mosaic virus strain New Zealand OC Viruses; Riboviria; Tymovirales; Alphaflexiviridae; Potexvirus. XX RN [1] RP 1-6956 RA Zhang G.G., Thrush A., Forster R.L.; RT "The complete nucleotide sequence of the narcissus mosaic virus New Zealand RT strain"; RL Unpublished. XX RN [2] RP 1-6956 RA Zhang G.G., Thrush A., Forster R.L.; RT ; RL Submitted (27-JAN-2003) to the INSDC. RL Genesis Research & Development Corporation Limited, One Fox Street, RL Parnell, Auckland 1001, New Zealand XX DR MD5; c4aac1a14874650fe3825e5c7dd27f71. DR EuropePMC; PMC3170305; 21854646. DR EuropePMC; PMC3728148; 23849589. XX FH Key Location/Qualifiers FH FT source 1..6956 FT /organism="Narcissus mosaic virus strain New Zealand" FT /strain="New Zealand" FT /mol_type="genomic RNA" FT /note="NMV-NZ excluding the 3' poly-A tail" FT /db_xref="taxon:231981" FT CDS 81..5012 FT /codon_start=1 FT /product="186K protein" FT /db_xref="GOA:Q6XLP3" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:Q6XLP3" FT /protein_id="AAP51012.1" FT /translation="MAKVRAALERIRDPSVQTALSEAAYTHVRPVLKESLVNCPYALSN FT DEADCLESFGITVNPYANQTHTHAACKVIENRMLEIVGMHLPKHSCTMLFLKRSKLRYM FT RRAAALKDVFLNKDVEPKDLFRYDRDTIRSRLQDIDTKIAYMSDTLHFMSRREIVQLFE FT DSPKLETLLATVVLPVEALHKRTSLYPSLYSINYSAKGFEYIPGNHGGGSYFHPYTTLE FT WLKVRMINAEDFHKLSTGFILTFQLVESLGANHLFIVQKAKLLTPQMRTFCRDSLVTLP FT QVFCPAAMNANRPLSKTKAMQMLLYCKSVKQVTERDIYAKIRQIIPTSELELYDPDEIV FT HLANYFFFVSNLDSTTCYEDLLSSDIWMRLTRPLRTAVRKFVEFFKGKQDFDKLLIALK FT WQPFSYSLEPVDFTAYFVSRRVRTLARMEDISWHQAAELARRLESEPDLLSWEDLCSKP FT IADPLASVSTPPLATLTSPAVSESRVTDTSSTKLTNISVESILHPTISNHTTIAESLNP FT KFCGWTRGDFHHMIVNQPSDRLKGCRSWFYTTSPDVDLMLENLLLTPIPWESRLSDILL FT TLNTPANACCIQILDCSAASAWVDWSVRPIKIFPVAFVGMGETTLTFEDDSTLLLKEGE FT FVVFPPEWLARHKYQIKTASNLHLCATFLVLDTTLLGETLANNCIEPEPLRPTTSRKSC FT QPTPSVDKSGADSLPEKQIVTPIVDAAVLSCRPKLQDVSKPTKVLMAAETSDSVADSLP FT WASWVNLLQKHGFKGNQQQIAQDGQLIIPISDIRKLPHIPFPEEVPETLRETLKNIKRF FT PVEITMQHKRAGSYASDIKNNRTGKLLPQMDNKWKAAFAYKLQQEDRKVCGTIIHGCGG FT SGKSFAIQEWMRSLKEDQSVVTVVTPTVLLRNDWQTKLPILPADVFKTFEKSVIQPCNP FT ILVFDDYTKLPPGLIESVVMHHQNVVFIILTGDNRQSVYHETNSEAYIAALPEATEIFS FT PYCEFYLNATHRNVKDLANKLGVYSEREGKLKVNFASHHLKASRIPMLVPSTMKRNAMF FT DMGHHSMTYAGCQGLTAPKIQILLDNHTQFCSERVLYTCLSRAVDTIHFINTGPTTGDY FT WAKLESTPYLKAFIDTYRDEKTEVYNSQPASAEPTEPEAPATHFPTAPKPLLEPLVEKL FT TDKEAREIFSPAFGYSNAIQTEDSVVQLFQHQQAKDETLYWATIDTRLAISTPEANLRE FT FNMKRDIGDILFMNYSKLMCLPPEPVPFEERLWKISADEVRNTYISKPIGNLVNAAARQ FT SPDFPKNKIALFLKSQWVKKTEKLGTLKVKPGQTIASFMQETVMLYGTMARYLRKMRRR FT FQPDNIFINCETTPEDLDKFIKSQWDFSRPAHTNDFTAFDQSQDGAMLQFEVIKAKFFN FT IPAEIIEGYIYIKLNAAIFLGTLGIMRLSGEGPTFDANTECSIAYNATRFHITDDTAQV FT YAGDDMALDRVSIEKDSFNRLEKQLKLTSKPMFPKQVKGDYAEFCGWVLTPAGIIKHSL FT KMHASIQLQKKINNIKESARSYALDLRYAYKLGDELQEHLNEVEADYHQQSVRDMHLLH FT QQDVLNKGNASPPHIFEKTADANTAGSSKTHKRNALKKKKQTRIAEILPSPDATGLSSL FT PFRFF" FT CDS 5014..5715 FT /codon_start=1 FT /product="26K protein" FT /db_xref="GOA:Q6XLP2" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:Q6XLP2" FT /protein_id="AAP51013.1" FT /translation="MDCKYLLELLDSYSFIRSSRSFSLPIIIHGVAGCGKSTLIQKIAL FT AFPELLIGSFTPGLLDPNSGRKQLAVTSDPLDILDEYLGGPNPVVRLAKFCDPLQYSCE FT QPEVPHFTSLLTWRFCVRTTALLNGIFGCQIKSRREDLCHLTHENPYTTDPKGVVVAHE FT QEVINLLLQHGCPVTPTQHLWGLTIPVVSVYITSIASLSTVDRANLFLSLTRHSKALHI FT FEFDAWSHATC" FT CDS 5690..6082 FT /codon_start=1 FT /product="14K protein" FT /db_xref="InterPro:IPR001896" FT /db_xref="UniProtKB/TrEMBL:Q6XLP1" FT /protein_id="AAP51014.1" FT /translation="MPGLTPPVNYEQVYKVLAIGFLLCASIYCLRSNHLPHVGDNIHSL FT PHGGNYADGTKRVQYFRPHSSTSTNHKYTALCAVLTLSLLIFAQTRLAAGNRSTSVSIC FT HHCSSQGSLSGGNHGRVSGHSELPTT" FT CDS 5841..6143 FT /codon_start=1 FT /product="11K protein" FT /db_xref="GOA:Q6XLP0" FT /db_xref="InterPro:IPR003411" FT /db_xref="UniProtKB/TrEMBL:Q6XLP0" FT /protein_id="AAP51015.1" FT /translation="MQTAPREYSTSGPTAVPARTTNIQHYAPYSLYRFLSSHKLDWLLG FT IAVLVFLYVITAAPKEVCQVVITGESVVIRNCQQPDRILANLNLSPWNGVKFPLL" FT CDS 6193..6876 FT /codon_start=1 FT /product="coat protein" FT /db_xref="GOA:Q6XLN9" FT /db_xref="InterPro:IPR000052" FT /db_xref="UniProtKB/TrEMBL:Q6XLN9" FT /protein_id="AAP51016.1" FT /translation="MATPSTQNTDPKPANADLSDPNRAPSLEDLKKIKYESTTTAVATP FT AEIQLLGDLFKKLGLDANSVAPAMWDLARAYADVQASRSAVLSGTTPSNPAITRQALAR FT QFYVINITPRQFCMYFAKVVWNLLLDSNVPPAGWAKLGLPDDCKFAGFDFFEGVLSPAA FT LDPADGLIRPPSPREIQAHSTAKYGALARQRLQNGNFVSTLAEVTHGRVGGVNAMYAIE FT APPEL" FT CDS 6296..6580 FT /codon_start=1 FT /product="10k protein" FT /db_xref="UniProtKB/TrEMBL:Q6XLN8" FT /protein_id="AAP51017.1" FT /translation="MNQPQLPSPPQLRFSCSVIFSRSLVLTLTQSHPLCGTSLEPTPMC FT KRVVQQCYPEPHHQTLRSPGKLSLDSFTSLISLRASSACTSPRWSGTCY" XX SQ Sequence 6956 BP; 1938 A; 1851 C; 1436 G; 1731 T; 0 other; gaaaacaaac caacacaaac acacgtatcc ttaaacggac catataaggt gaataatagc 60 aatacgcact atacacccat atggctaaag tacgtgccgc gttggagaga attagggacc 120 catcggtgca aaccgcttta tctgaagcag cttacacaca tgttcgcccc gttctcaaag 180 aatccttagt caactgcccc tatgcccttt ctaacgacga agctgactgc ttagaaagtt 240 ttggcattac tgtaaatcca tatgctaacc aaactcacac tcacgcagca tgtaaagtca 300 tagaaaatag aatgttagaa atagttggca tgcacttacc taaacactca tgcaccatgc 360 ttttcctgaa aagaagcaaa ttgcgataca tgcggagggc agctgcactt aaagacgtct 420 ttctcaataa agacgttgaa cccaaagacc tgttccgtta cgatcgtgac acaataagaa 480 gtagactgca ggatatagac accaaaattg catatatgtc tgacactctg catttcatgt 540 ctcgcaggga aatagtgcag ctatttgagg attcaccgaa actcgagaca ctactcgcta 600 ctgttgtgct accagtcgaa gctcttcaca agagaacatc gctctacccg agcttgtact 660 cgatcaacta ctcagccaaa ggcttcgaat acataccagg caaccatggc gggggttctt 720 atttccatcc ctacacaacc ctcgaatggc tcaaagtgcg tatgatcaac gccgaagact 780 tccataaact ctcaactggg tttattttaa ccttccaact tgtggaaagc ttaggcgcta 840 atcacctttt catagtgcag aaagctaaac tcctaacgcc acagatgcgc actttctgtc 900 gtgacagctt agtcacactc ccacaagttt tttgtccggc agctatgaac gctaatagac 960 ctctctccaa aactaaagct atgcaaatgc tattatattg caaatcggtc aagcaagtta 1020 ccgagagaga tatctacgca aaaattaggc aaatcattcc cacaagcgag ctcgagctgt 1080 acgatcccga tgagattgtg catttggcta attacttttt ctttgtttct aacttagact 1140 caacaacttg ctacgaagat cttctctcat cggacatctg gatgagactc actaggccac 1200 tcaggacagc ggttcggaag tttgtcgaat tctttaaagg caaacaagac tttgataaat 1260 tattgatcgc tcttaaatgg caacccttct cctactcatt agagccagtt gacttcacgg 1320 catacttcgt aagccgtcga gtacgcacac tggctaggat ggaggacata tcatggcatc 1380 aagctgctga actggcccgt cgtctcgaaa gtgaacccga cctcctctct tgggaagatc 1440 tttgttccaa gcccattgct gatcccctcg ccagcgtctc caccccacct ctcgctacgc 1500 tcacctcgcc tgccgtctct gaaagcaggg ttactgacac ctcttccacc aaactaacta 1560 acatttcagt cgaatccatc ctccacccaa ccatctctaa ccacaccacc atagctgaat 1620 ccctaaatcc aaaattctgt ggatggacta ggggggactt ccatcacatg atcgttaatc 1680 aacccagtga cagactcaaa ggttgccgat catggtttta caccacttca cccgacgtgg 1740 acttgatgtt ggaaaatctt cttctaactc ccatcccctg ggaatcaaga ttgtctgaca 1800 ttttgctcac gcttaacacc cctgctaacg cttgctgcat ccaaatttta gactgctcag 1860 cagcgagtgc ctgggtcgat tggtcagtcc gaccaatcaa gattttccct gttgcttttg 1920 tggggatggg tgaaaccaca ttaactttcg aagacgactc gaccctacta ctgaaagagg 1980 gcgagtttgt ggttttccca cccgagtggt tggcccggca taaatatcag atcaaaactg 2040 cgtcgaatct ccacctgtgc gcaacttttc ttgtgttaga cacaactcta cttggtgaaa 2100 ccctggctaa caattgtatt gaaccagaac cactcaggcc taccacctca cgcaaatcat 2160 gtcaacccac tccatcggta gacaagagcg gagctgactc actacctgag aaacaaattg 2220 tcacacccat cgttgacgcg gccgtgttaa gttgtcgacc taagctgcag gatgtgtcca 2280 aacccaccaa agttctaatg gccgctgaaa cctctgattc agtggctgac tcgctaccgt 2340 gggctagctg ggtgaacttg ttacagaaac acggtttcaa agggaatcaa caacagattg 2400 cacaggatgg acaacttatc attcctatca gtgatatccg caagctacca catatcccct 2460 tcccagagga agtaccggaa acactgcgag agactctcaa aaacatcaaa cgtttcccag 2520 tcgaaataac aatgcaacat aaaagggctg gctcctacgc atctgatatc aagaacaatc 2580 ggaccggcaa gttgctgcct cagatggaca acaaatggaa agccgctttt gcatataagc 2640 tgcaacagga ggacaggaaa gtttgcggca caatcattca cggctgcgga ggctccggca 2700 aatcctttgc cattcaagag tggatgcgct ctttgaagga agaccagtca gtggtcacag 2760 tcgtcacacc aacggttttg ctgagaaacg actggcaaac gaagttaccc atcctgccgg 2820 cagatgtttt caaaactttc gagaaatcgg tgatccaacc ctgcaatcca attctggtgt 2880 ttgatgacta cacaaaattg ccacctggat taatagagag tgtagtcatg catcaccaga 2940 acgttgtttt catcattctc actggagaca atcgacagtc agtttaccac gagaccaact 3000 cggaagcgta catcgcagcg ttacctgaag cgacagagat tttcagcccc tactgtgagt 3060 tctacctcaa tgccacccac cgaaacgtta aagacctagc caacaagctg ggtgtttact 3120 ctgaaaggga gggcaagttg aaagtaaact tcgcttcaca tcaccttaaa gcttctcgaa 3180 tcccaatgtt ggtgccttca actatgaaac gcaatgctat gttcgatatg ggccaccaca 3240 gcatgacgta tgccggctgc caaggtctta ccgccccaaa aatccaaatc ctgctcgaca 3300 accacactca attttgttca gagcgggttc tctacacttg cttgtctcgt gccgtcgaca 3360 caattcattt catcaacaca ggacccacga caggagacta ttgggcgaaa ttggaaagca 3420 ctccctatct caaggctttc atagacactt acagggacga gaaaacagaa gtctacaatt 3480 cccaacctgc gagtgccgaa ccaaccgagc ctgaagcacc cgccacgcat tttcccacag 3540 caccgaaacc ccttcttgag ccgctagtgg aaaaattgac ggataaagag gcgagagaaa 3600 tcttttcacc tgctttcggc tactcaaacg ccattcaaac agaagattct gttgttcagc 3660 tgttccaaca ccagcaagcg aaagacgaga ctctttattg ggccaccatc gacacaagat 3720 tggctatctc cacgcctgaa gcaaatttaa gggagttcaa catgaaacgt gacattggtg 3780 acattctgtt catgaattac tccaaactga tgtgcttgcc cccagagcca gttcccttcg 3840 aagagaggct gtggaaaatc tcagctgatg aggtccgcaa tacttatatt agcaaaccta 3900 ttggcaatct ggtaaatgct gctgctcgtc aaagccccga ctttccaaag aataagatcg 3960 ctctgtttct gaagtcacaa tgggtgaaga agacagaaaa actgggaacc ttgaaagtca 4020 agccaggaca gaccatcgct tctttcatgc aagaaactgt catgctctat ggcaccatgg 4080 cacgctactt acgcaagatg cggagaagat tccagcctga caacattttc atcaactgcg 4140 aaactacccc agaagacctg gataagttta ttaagagtca gtgggatttc tctagaccag 4200 cgcacaccaa tgacttcact gctttcgatc agtcacaaga tggcgccatg ctgcagtttg 4260 aagtgattaa ggcaaaattt ttcaacatac ctgctgagat catcgagggc tacatctaca 4320 tcaaactcaa cgcagccatt ttcttgggca ccttgggcat catgcggctc agtggagaag 4380 gaccaacatt tgacgccaat actgaatgtt caatcgccta caacgccaca aggttccata 4440 tcactgatga cacagctcaa gtctacgcag gcgatgacat ggcgttggac cgggtgagca 4500 ttgagaaaga cagcttcaat cgattagaaa aacagctgaa gctcacgtcg aaaccgatgt 4560 tccctaaaca agtcaaaggg gattacgcag aattttgtgg ttgggtcctg actcccgctg 4620 gcatcatcaa acattctttg aaaatgcatg cttccatcca gctgcagaag aagatcaaca 4680 acatcaaaga gagtgctaga tcctacgcac ttgatctgcg ttacgcgtac aaactgggag 4740 acgagctgca agaacatttg aatgaggtag aagcggacta ccaccagcaa tctgttcgcg 4800 acatgcactt gcttcatcag caagatgtgt tgaacaaagg taatgccagt ccgccacata 4860 ttttcgagaa aacggctgac gccaacactg cgggaagctc gaagactcac aagcgaaacg 4920 cgctgaagaa gaaaaaacag actcgaatcg cagaaattct tccgagtcct gacgctaccg 4980 ggttaagttc attgcctttt cgtttttttt gaaatggact gtaagtattt attagagtta 5040 ttagattcgt atagtttcat acgttcttct aggtcgtttt cattacccat tattatccac 5100 ggtgttgctg gctgcggtaa atctacactc attcagaaga tagctcttgc tttccctgaa 5160 cttttaatcg gcagcttcac accaggtttg cttgacccca attccggccg gaaacaattg 5220 gcagttacct ccgacccgct agacatcttg gacgagtact tgggcggccc taaccccgtc 5280 gttaggcttg caaaattttg cgatcctttg caatattctt gtgagcagcc tgaggttcca 5340 cactttactt ccttactcac ttggaggttt tgtgttcgta ctactgctct tttaaacgga 5400 atttttggct gccaaatcaa gtctcgtcgt gaggatctgt gtcatctcac ccacgagaat 5460 ccttacacca ccgatcctaa aggagtagtc gtggcccacg aacaagaagt catcaacttg 5520 ctgttgcaac acggttgccc cgtgactccc actcaacacc tttggggcct gaccattcca 5580 gttgtgagcg tctacattac ctccatcgcc tctttgtcta ctgtcgaccg agctaatctc 5640 ttcctgagtc tcactagaca ctcaaaagcg ctccacattt tcgaattcga tgcctggtct 5700 cacgccacct gttaactacg agcaggtgta caaagttttg gctattgggt tcctgctctg 5760 cgcttctatc tattgtctga ggtctaatca cttaccacac gtgggagata acattcattc 5820 ccttccccac ggaggcaatt atgcagacgg caccaagaga gtacagtact tccggcccca 5880 cagcagtacc agcacgaacc acaaatatac agcattatgc gccgtactca ctttatcgct 5940 tcttatcttc gcacaaactc gactggctgc tgggaatcgc agtactagtg tttctatatg 6000 tcatcactgc agctcccaag gaagtttgtc aggtggtaat cacgggagag tcagtggtca 6060 ttcggaactg ccaacaacct gatcgcattt tggccaatct caatctatca ccgtggaacg 6120 gggttaagtt tcctttatta tagtttgaaa ttattagact ttgtgtgtat tatatagaat 6180 aaatactctt caatggctac tcccagcact cagaacaccg accctaagcc cgccaacgct 6240 gatctctctg acccgaatag agctccatca ctggaggact tgaagaagat caagtatgaa 6300 tcaaccacaa ctgccgtcgc caccccagct gagattcagc tgctcggtga tcttttcaag 6360 aagcttggtc ttgacgctaa ctcagtcgca cccgctatgt gggacctcgc tcgagcctac 6420 gccgatgtgc aagcgagtcg ttcagcagtg ctatccggaa ccacaccatc aaaccctgcg 6480 atcacccggc aagctctcgc tcgacagttt tacgtcatta atatcactcc gcgccagttc 6540 tgcatgtact tcgccaaggt ggtctggaac ttgctactag actcaaacgt cccacctgct 6600 ggatgggcaa aactgggact gcctgacgat tgcaagttcg ccggcttcga cttctttgaa 6660 ggcgtgcttt cacctgccgc acttgaccca gcagacggcc tcattcgacc tccctctccg 6720 cgtgagattc aagcacactc cacggcgaaa tatggcgctc tcgccaggca acgcctacag 6780 aatggaaact ttgtttccac cttggctgaa gtcactcacg gtagggtcgg cggtgtcaac 6840 gccatgtacg ccattgaagc acctccagaa ttgtaataga aacactagca aacttaaatt 6900 agtgtgtggt ttataaagtt ttacttccac tatcaataaa ataaactatt gatatt 6956 //