ID AY222839; SV 1; linear; genomic RNA; STD; VRL; 3202 BP. XX AC AY222839; XX DT 31-AUG-2003 (Rel. 77, Created) DT 24-MAR-2005 (Rel. 83, Last updated, Version 2) XX DE Macrobrachium rosenbergii nodavirus segment RNA-1, complete sequence. XX KW . XX OS Macrobrachium rosenbergii nodavirus OC Viruses; Riboviria; Nodaviridae; unclassified Nodaviridae. XX RN [1] RP 1-3202 RX DOI; 10.1046/j.1365-2761.2003.00493.x. RX PUBMED; 14653316. RA Sri Widada J., Durand S., Cambournac I., Qian D., Shi Z., Dejonghe E., RA Richard V., Bonami J.R.; RT "Genome-based detection methods of Macrobrachium rosenbergii nodavirus, a RT pathogen of the giant freshwater prawn, Macrobrachium rosenbergii dot-blot, RT in situ hybridization and RT-PCR"; RL J. Fish Dis. 26(10):583-590(2003). XX RN [2] RP 1-3202 RA Bonami J.-R., Sri Widada J., Richard V.R., Vincent A., Durand S.P.; RT "Nucleotide sequence of the MrNV-RNA-1 of Macrobrachium rosenbergii"; RL Unpublished. XX RN [3] RP 1-3202 RA Bonami J.-R., Sri Widada J., Richard V.R., Vincent A., Durand S.P.; RT ; RL Submitted (22-JAN-2003) to the INSDC. RL DRIM (CNRS), Universite Montpellier, Place E. Bataillon, Montpellier 34095, RL France XX DR MD5; 83f1af0a24a5c3132e5597a018878c98. XX FH Key Location/Qualifiers FH FT source 1..3202 FT /organism="Macrobrachium rosenbergii nodavirus" FT /segment="RNA-1" FT /host="Macrobrachium rosenbergii" FT /mol_type="genomic RNA" FT /note="nodavirus of crustacean origin" FT /db_xref="taxon:222557" FT CDS 24..3161 FT /codon_start=1 FT /product="RNA-dependent RNA polymerase" FT /note="A protein" FT /db_xref="GOA:Q6XNL5" FT /db_xref="InterPro:IPR001205" FT /db_xref="InterPro:IPR020237" FT /db_xref="UniProtKB/Swiss-Prot:Q6XNL5" FT /protein_id="AAO60068.1" FT /translation="MKCNNLLYGVELPMCLQSSMGMVVVTGLAIVYLVIYILIYSFTHG FT PRLSRRLASYVVIGPYEAIAKSRPAMALQRAMVDLTRRDVRTDWYPLNNLLMNKPHRLS FT ENGHKTSGAVRDAARNLITSAITSLGMDKYEISPGGHTVDEQLASHRHYAVNDLHRASA FT DDAVKENAVIVAIDTDYYLRDPSIYFSNNNPFILHTFQPITVAGKDGDVRFTISDNQVD FT YRVDGGGRWQHKVWNWCDYGEFLYLKNILGILSINWWLSFFGIRKVIYQKIQHARPWVD FT CPNRALVWGLPQFTRYMITWLPIEMNARELSRVNYQCASRPGWNCLVDHTSTKLVASIG FT REGNDCHVELAKEDLDVVLGLSTMQSVTSRLLQMGYKQPQTLATVCQFYNSAAYDILSC FT SIVARPSQPPVHWPLASEIDQPTTSFRNYSNNIVTCGNLCPQLKRWEVLSNSLEHRVTM FT VANNKVPTPRIARFAEEYVRLVVPEANVGVPYSLEDARKELDKPTQVNAVNQIWETVDM FT EVRRLIEAFVKNEPTNKSGRIISSFADSRFLLKFSTYTLAFRDEVLHAEHNRHWFCPGL FT TPNEIADKVCDYVRGVATPAEGDFSNFDGRVSAWCQENVMNAVYHRWFNRKFSKELQKY FT TSMLVSCPARAKRFGFQYEPGVGVKSGSPTTCDLNSVLNNFTQYAAVRLTKPDLSPQEA FT FEQTGLSFGDDSLFDKQYQLRWNYVVEQLGMELKVEPFDPSNGVTFLARVFPDPYSTNT FT SFQDPLRTWRKLNMTSRTCVPVESAALDRVSGYLVTDKYSPVTSEYCHMIERCYMNTAE FT SVTRRRQRKDCDREKPYWLVSGGAWPQREGDYELMMRVTAARTGFEESKLINLISQFQS FT VHDPWDIKPLDYQEPSPYKDTLDIDGQPVDAVDERQYQNERNTVNLRAGAAISQMPVPS FT VPGGEDCNRQSADMPGPKSSEGSEQLQGLPEQDGSNRLQCHRQPTFKAKGGSNTKGRSR FT KSRNGGRSISSKTANPTTHEVGGGNGKTRVTIAKRSGPKRPHNVVSNAWETLNDNR" FT CDS 2725..3126 FT /codon_start=1 FT /product="B2 protein" FT /db_xref="InterPro:IPR024377" FT /db_xref="InterPro:IPR037209" FT /db_xref="UniProtKB/TrEMBL:Q6XNL4" FT /protein_id="AAO60069.1" FT /translation="MQWTNVNIKMSATQSTYELVQQFPRCLSQVCQAVKTAIDSLPTCQ FT DPKVAKDLSSYKACLSKMEATAFNATDNLLSKPRVVATLKGEAVNPGTEDVLSAAKQQI FT QQLTRLVEAMERPELPLLSEADLSDLITW" XX SQ Sequence 3202 BP; 927 A; 679 C; 736 G; 859 T; 1 other; gttaaacgtt ttgttttcta gcaatgaagt gcaataatct tctctacggt gtggaactcc 60 ccatgtgctt gcaatcgagc atgggcatgg tggttgttac cggactcgcc atagtgtatt 120 tggtaattta catcctcatt tactcattta cacatggacc acgactcagc cgcagattag 180 cttcctatgt ggtaatcgga ccttatgaag ctattgctaa aagccgaccc gcgatggccc 240 tacaaagggc catggttgat ttgacacgac gggacgtgcg tactgactgg tacccattga 300 ataatttgtt gatgaacaaa cctcaccgct tatctgaaaa tggacacaaa acttctggag 360 cggttcgaga tgcagctaga aatttaatta ctagcgctat aacatcactg ggtatggata 420 agtatgaaat atcaccaggt ggccacactg tcgacgagca attggcatct catcgacatt 480 atgctgttaa tgacttacat cgagcatcag cagatgacgc agttaaagaa aacgctgtca 540 ttgtggctat tgatacggac tactatctac gtgatccatc aatctacttt tcaaataata 600 atccatttat tctgcatact tttcaaccaa taactgttgc aggtaaagat ggagatgtga 660 ggttcactat tagtgacaac caagtggact atagggtaga tggtggtggt aggtggcaac 720 ataaagtttg gaattggtgt gattatggtg aattcctata tttaaagaac atcctaggta 780 ttcttagcat taattggtgg ctaagtttct ttggtatcag aaaggttata taccaaaaga 840 tccaacacgc acgtccctgg gtggattgtc cgaaccgggc cttagtttgg ggattacctc 900 aattcactag gtatatgatw acttggttgc caattgagat gaacgcacgt gaattgagta 960 gagtcaacta tcagtgtgct agcagacctg gctggaattg tttagttgac cacactagca 1020 ccaaacttgt agccagcata ggtcgagagg gtaatgactg tcatgttgaa cttgctaagg 1080 aggacttaga tgttgttcta ggcttaagta ccatgcagtc agttacttca agacttttac 1140 aaatgggtta caagcaacca caaactttgg ctacggtttg tcagttctac aacagtgccg 1200 cttatgatat actaagctgt agcatagttg ctagaccttc acaaccacct gtccactggc 1260 cattggcgtc tgaaattgat cagcctacaa cttcttttcg taattactcc aacaatattg 1320 tgacctgtgg taatctttgc ccccaactta aacgttggga ggttttaagt aattctttag 1380 aacatcgtgt taccatggtg gccaataata aggttccaac acctcgcata gccaggtttg 1440 ctgaagaata cgtccgcctg gtagttcccg aagcgaatgt aggtgtacct tatagtttgg 1500 aagatgcgcg taaagaactt gataaaccca cgcaagtcaa tgcggtaaac caaatttggg 1560 aaacagtcga catggaagtc cgccgattaa ttgaagcatt tgtgaagaat gaaccgacca 1620 ataaatctgg tcgcataata tcatcctttg cggactcaag attcttgttg aaattttcca 1680 catatacgct tgcctttcga gatgaagtat tacatgctga acataatcga cattggtttt 1740 gtcctggatt gacacctaat gagatagcag ataaagtctg cgactatgtt cgtggtgttg 1800 cgacacctgc agaaggtgat tttagcaact ttgacggaag agtatctgct tggtgtcaag 1860 agaacgtgat gaatgcggtt taccatagat ggtttaaccg taagttttcc aaggaattgc 1920 agaagtatac atcaatgttg gttagttgcc cagctcgagc taagcgtttt ggtttccaat 1980 atgaaccggg agtgggggtt aagagtggta gtccaaccac ctgtgacctt aattcagttc 2040 taaataactt cactcaatac gcagcagtta ggctgactaa accagacctc tcaccacaag 2100 aagcctttga acaaactggc ttaagtttcg gcgacgattc actatttgac aagcaatatc 2160 aactcagatg gaattacgtc gtcgaacaac ttggtatgga actcaaggtt gaaccctttg 2220 accccagtaa tggtgtgact tttcttgctc gtgtttttcc tgatccttat agtacaaaca 2280 ctagttttca ggatccacta agaacgtgga gaaagttgaa catgacttca cgcacgtgtg 2340 tacctgtcga gtcagcagct cttgatcgtg tcagtggata tttagtaact gacaagtact 2400 ctccagtaac aagtgagtac tgtcacatga ttgagaggtg ttatatgaac actgccgaaa 2460 gtgtaactcg aaggagacaa cgcaaggatt gtgaccgtga gaaaccatac tggttagtga 2520 gtggtggcgc ctggccccag agggaggggg actatgaatt gatgatgagg gttaccgcag 2580 cccgtactgg atttgaggag tcaaaactta ttaatttgat tagccagttc caatcagttc 2640 atgatccttg ggacatcaaa ccgctagact atcaggaacc atcaccttat aaagacacac 2700 tagacataga tggccagccg gtagatgcag tggacgaacg tcaatatcaa aatgagcgca 2760 acacagtcaa cttacgagct ggtgcagcaa tttcccagat gcctgtccca agtgtgccag 2820 gcggtgaaga ctgcaatcga cagtctgccg acatgccagg acccaaaagt agcgaaggat 2880 ctgagcagct acaaggcttg cctgagcaag atggaagcaa ccgccttcaa tgccaccgac 2940 aacctacttt caaagccaag ggtggtagca acactaaagg gagaagccgt aaatcccgga 3000 acggaggacg ttctatcagc agcaaaacag caaatccaac aactcacgag gttggtggag 3060 gcaatggaaa gaccagagtt accattgcta agcgaagcgg acctaagcga cctcataacg 3120 tggtaagcaa tgcctgggaa actctgaatg acaaccgata aactctctct ttctctctct 3180 ccaagtctcc ttcactcttt cg 3202 //