ID AY220739; SV 1; linear; genomic RNA; STD; VRL; 5685 BP. XX AC AY220739; XX DT 27-MAR-2003 (Rel. 75, Created) DT 27-MAR-2003 (Rel. 75, Last updated, Version 1) XX DE Barley yellow dwarf virus - GAV, complete genome. XX KW . XX OS Barley yellow dwarf virus GAV OC Viruses; Riboviria; Luteoviridae; Luteovirus; unclassified Luteovirus. XX RN [1] RP 1-5685 RA Jin Z., Wang X., Zhou G., Chang S.; RT "Nucleotide sequence analysis of the genome of the GAV of barley yellow RT dwarf virus in China"; RL Unpublished. XX RN [2] RP 1-5685 RA Jin Z., Wang X., Zhou G., Chang S.; RT ; RL Submitted (16-JAN-2003) to the INSDC. RL Plant Virology Group, Institute of Plant Protection, Chinese Acadamy of RL Agricultural Sciences, West Yuanmingyuan Road No. 2, Beijing 100094, China XX DR MD5; f19a343a542c10cd562afbc8b80231d3. DR EuropePMC; PMC2583970; 18937850. DR EuropePMC; PMC4422679; 25946037. DR RFAM; RF00434; BTE. DR RFAM; RF01508; BYDV_5_UTR. XX FH Key Location/Qualifiers FH FT source 1..5685 FT /organism="Barley yellow dwarf virus GAV" FT /mol_type="genomic RNA" FT /db_xref="taxon:224578" FT CDS join(143..1159,1147..2745) FT /codon_start=1 FT /product="RNA-dependent RNA polymerase P1-P2 fusion FT protein" FT /note="low-abundance product derived from C1 ribosomal FT frameshift" FT /db_xref="GOA:Q80J52" FT /db_xref="InterPro:IPR002166" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR013674" FT /db_xref="UniProtKB/TrEMBL:Q80J52" FT /protein_id="AAO65185.1" FT /translation="MFFEILIGASAKAVKDFISHCYSRLKSIYYSFKRWLMEISGQFKA FT HDAFVNMCFGHMADIEDFEAELAEEFAEREDEVEEARSLLKLLVAQKSKSGVTEAWNDF FT FLKSRGGVYAPLSCEPTKQELEVKSEKLERLLDEQHQFEVRAAKKYIKEKGRGFINCWN FT DLRSRLRLVKDVKDEAKDNAKVAAKIGAEMFAPVDVQDLYSFTEVKKVETGLTKEVVKE FT VNGEETKRLEPILEEVRSIKDTAEARDAASTWITETVKLKNSTLNADELSLATIARYVE FT NVGDKFKLDIASKTYLKQCATMSVPIPTTKDIKMKMVLQSPEARARRERMDVLDSVGFL FT CGFLEGLCTASGFESPFPILGLPEIAVTDGARLRKVSSNIRYLSQTHLGLVYKAPNASL FT HNALVAVERRVFTVGKGDEPIYPPRPEHDIFTDTMDYFGKSIIDEVGYCKTYPAQLLAN FT SYSAGKRAMYHKAIASLKTTPYQQRDANVQAFLKKEKHWMTKDIAPRLICPRSKRYNII FT LGTRLKFNEKKIMHAIDSVFGSPTVLSGYDNFKQGRIIAKKWQKFACPVAIGVDASRFD FT QHVSEQALKWEHGIYNGIFGDSELALALEHQISNNIKMFVEDKMLRFKVRGHRMSGDIN FT TSMGNKLIMCGTMHAYFKKLGVEAELCNNGDDCVIITDRANEKLFDGMYDHFLQYGFNM FT VTEKPVYELEQLEFCQSKPVSINGKYRMVRRPDSIGKDSTTLLSMLNQSDVKSYMSAVA FT QCGLVLNAGVPILESFYKCLYRSSGYKKVSDEFIKNVISYGTDKRLQGRRTFEDTPITN FT HSRMSYWESFGVDPKIQQIVERYYDNLTVSAQLQSVKVTTPHLQSILLSIPENHSQNDY FT " FT CDS 143..1162 FT /codon_start=1 FT /product="RNA-dependent RNA polymerase P1" FT /note="ORF1" FT /db_xref="GOA:Q80J51" FT /db_xref="InterPro:IPR013674" FT /db_xref="UniProtKB/TrEMBL:Q80J51" FT /protein_id="AAO65186.1" FT /translation="MFFEILIGASAKAVKDFISHCYSRLKSIYYSFKRWLMEISGQFKA FT HDAFVNMCFGHMADIEDFEAELAEEFAEREDEVEEARSLLKLLVAQKSKSGVTEAWNDF FT FLKSRGGVYAPLSCEPTKQELEVKSEKLERLLDEQHQFEVRAAKKYIKEKGRGFINCWN FT DLRSRLRLVKDVKDEAKDNAKVAAKIGAEMFAPVDVQDLYSFTEVKKVETGLTKEVVKE FT VNGEETKRLEPILEEVRSIKDTAEARDAASTWITETVKLKNSTLNADELSLATIARYVE FT NVGDKFKLDIASKTYLKQCATMSVPIPTTKDIKMKMVLQSPEARARRERMDVLDSVGF" FT CDS 2859..4835 FT /codon_start=1 FT /transl_except=(pos:3456..3458,aa:OTHER) FT /product="aphid transmission protein P5" FT /note="translated from subgenomic RNA1 as a fusion protein FT via read-through of the coat protein (P3) stop codon" FT /db_xref="GOA:Q80J50" FT /db_xref="InterPro:IPR001517" FT /db_xref="InterPro:IPR002929" FT /db_xref="UniProtKB/TrEMBL:Q80J50" FT /protein_id="AAO65187.1" FT /translation="MNSVGRRNNRRRNGPRRARRAGAVRRMVVVQPNRAGPKRRTRRRT FT RGGGANLISGPAGRTEVFVFSVNDLKANSSGTIKFGPDLSQCPALSGGILKSYHRYKIT FT NVKVEFKSHASASTVGAMFIELDTSCSQSTLGSYINSFTLSKSATKNFTAQQIDGKEFR FT ESSVNQFYMLYKANGSTSDTAGQFIITIRVANMTPKXVDSSTPEPTPQPQPEPKPDPQP FT TPEPQHKRFFEYVGTPYVIIQTRESSDSIAVKSMNDQSFQYIENETSEQRTVQAWRTSN FT NGVQAQAAFVFPIPAGEYSVNISCEGLQSVDHIGGNRDGYWIGLIAYQNQSGDYWGVGN FT YAGCDITNLLGTNTWRPGHEDLELDGCKFTNGQIVERDAVISFHVKAQGADPKFYLMAP FT KTMKSDKYNYVVSYGGYTDKRMEFGSISVTVDESDVEAQRYNRHTSTVGKAENRDYGWM FT SVLPPYDPNQVPEQEEEQPMVDKEMDSRPPVEPPSPTSDTEAERAFDLREEELTRARLE FT YEAATESIPDAAPDVLPSKSEMSSRPIDHDGRSLPKPQSKEVLGTYQGQNITPDDVPPV FT IAEKLREVNRAPSTLLYDRQPKTPKSFLSRFVETNKTSLASPGSQSSTSGMTREQASEY FT TRIRKSMGLTAAKEYKASLADTW" FT CDS 2859..3458 FT /codon_start=1 FT /product="coat protein P3" FT /note="ORF3; translated from subgenomic RNA1; occasional FT read-through of stop codon produces P3-P5 fusion protein" FT /db_xref="GOA:Q80J49" FT /db_xref="InterPro:IPR001517" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:Q80J49" FT /protein_id="AAO65188.1" FT /translation="MNSVGRRNNRRRNGPRRARRAGAVRRMVVVQPNRAGPKRRTRRRT FT RGGGANLISGPAGRTEVFVFSVNDLKANSSGTIKFGPDLSQCPALSGGILKSYHRYKIT FT NVKVEFKSHASASTVGAMFIELDTSCSQSTLGSYINSFTLSKSATKNFTAQQIDGKEFR FT ESSVNQFYMLYKANGSTSDTAGQFIITIRVANMTPK" FT CDS 2896..3360 FT /codon_start=1 FT /product="movement protein P4" FT /note="ORF4; translated via leaky scanning on subgenomic FT RNA1" FT /db_xref="InterPro:IPR001964" FT /db_xref="UniProtKB/TrEMBL:Q80J48" FT /protein_id="AAO65189.1" FT /translation="MAQGEQGALAQFGEWLWSNPIEPDQNEELVDAQEEEGQILYLDQQ FT AGLRYSYSQSTTLRPTPQGQSSSVPTFRNAQRFQVEYSSPTTVTRSQTSRLSLSHTRPP FT LQSAQCLLNSTLRAHNQPWVATLTHSPSQNQQPKTSPPNRLTGRNSGRAR" FT CDS 4942..5073 FT /codon_start=1 FT /product="P6 protein" FT /note="ORF6; highly variable sequence among BYDV isolates" FT /db_xref="GOA:Q80J47" FT /db_xref="InterPro:IPR009426" FT /db_xref="UniProtKB/TrEMBL:Q80J47" FT /protein_id="AAO65190.1" FT /translation="MDDLHVIAVCVLSTTVFAAAVLTISAIASICGSACATANIQRV" XX SQ Sequence 5685 BP; 1707 A; 1378 C; 1353 G; 1247 T; 0 other; tagtgaagat tgaccatctc acaaaagctg ttacgtgctt gtaacacact acacactcgt 60 tttgtaatcg agaagtagtt gcaagaacgg tcctctcatt gcctgactag ctgagagcca 120 tccttctatc cccaccgcca ccatgttctt cgaaattctt ataggagcta gtgccaaggc 180 ggtcaaagat ttcatcagcc actgctactc tagactgaaa tctatatatt attctttcaa 240 acgatggctg atggaaatat ctgggcaatt taaggcccat gacgcctttg tcaatatgtg 300 ctttgggcac atggctgaca ttgaagactt cgaggctgaa ctcgctgaag agttcgccga 360 gagggaggat gaggtggaag aggccaggag cctcttgaaa ctgctggtcg cccaaaaatc 420 taaatccggg gtgaccgagg cttggaacga cttcttcttg aagtcgaggg gcggtgttta 480 cgcaccgctc tcttgtgagc ccaccaagca ggaactagaa gtcaagagcg agaagctcga 540 gaggcttcta gacgaacagc accaattcga ggtgcgagcg gccaagaaat acattaaaga 600 aaagggccgc ggcttcatca actgctggaa cgacttgcgt agccgtctca gattggtgaa 660 ggatgtcaag gatgaggcga aggacaatgc caaagtcgct gcaaagattg gagcggagat 720 gttcgccccc gttgacgtgc aggacctcta cagctttaca gaggtcaaga aggtggagac 780 cggcctcaca aaggaggtcg taaaagaagt gaacggtgaa gaaacgaaac gcctcgaacc 840 catcttggaa gaggtgcgat ccatcaagga caccgccgaa gctagggacg ccgcctccac 900 ttggataaca gagacagtca aattgaaaaa ttcaaccctt aacgctgatg aactgtctct 960 cgccaccatc gcccgctacg ttgaaaatgt aggggacaaa tttaaactcg acattgccag 1020 caagacatat ctaaagcaat gcgcaacgat gtctgtacca attccaacca ccaaggacat 1080 caaaatgaag atggtgttgc agagtcctga agcacgtgcc aggcgggaac gcatggacgt 1140 gcttgactct gtgggttttt agaggggctc tgtaccgcct ctggttttga gagcccattt 1200 ccaattctcg ggctgccaga gattgcggtc acagacggag cccggctccg taaggttagt 1260 agcaatatta gataccttag ccaaacccac ttaggtttag tatataaggc accaaatgcc 1320 tccctgcaca acgcgcttgt ggcagtggag agaagagttt ttacagtagg aaagggggac 1380 gaacctattt accccccccg ccctgagcac gacattttca ctgatacaat ggactacttt 1440 ggtaagtcca taatcgacga ggtgggatac tgtaaaacat acccagcgca actcctggct 1500 aacagctata gcgcaggaaa aagggccatg tatcacaaag ccattgcatc cctgaaaaca 1560 accccctatc agcagaggga tgccaatgtg caagctttcc tcaagaagga aaaacattgg 1620 atgaccaagg acatcgctcc ccgattgata tgcccccgca gcaagcggta caacattatc 1680 ctaggaactc gtttgaaatt caacgagaag aagatcatgc acgccatcga tagtgtgttt 1740 ggatccccca ctgtgctttc tggttatgat aacttcaagc aaggaagaat catagccaag 1800 aagtggcaaa agtttgcatg ccccgtcgct atcggcgtgg atgctagccg ctttgaccaa 1860 cacgtgtcag agcaggcgct taagtgggaa cacgggatat acaatggaat cttcggtgat 1920 agcgaattgg ctcttgcact tgaacaccaa atatccaaca acatcaaaat gttcgtagag 1980 gacaaaatgc ttaggttcaa ggttagaggc catagaatgt ccggtgacat taacaccagc 2040 atgggaaaca agctaataat gtgcggcacg atgcacgcat atttcaagaa gctgggtgtt 2100 gaagcagaac tatgcaacaa tggagacgac tgtgtcatca tcactgacag agccaatgag 2160 aagctctttg atggcatgta cgatcacttt ctccagtatg gtttcaacat ggtgaccgaa 2220 aaaccagttt acgaactgga acaattggag ttttgccagt caaaaccggt ctctattaat 2280 ggaaaataca gaatggtcag aaggcccgat agcataggca aagacagcac aacactactg 2340 agcatgctca accaatccga cgtcaaaagt tacatgtcgg ctgtggctca gtgtggtttg 2400 gtgcttaacg ctggagtacc catactcgaa agtttctata aatgcctata tagaagctct 2460 gggtacaaga aagtgagtga tgaattcatc aaaaacgtca tttcgtatgg aacagataag 2520 agactacaag gtagacgtac ctttgaagac acacctatca ccaatcatag caggatgtcc 2580 tactgggaat cattcggagt tgaccctaag atacaacaaa ttgtcgagcg gtactacgac 2640 aatcttacgg tgagtgccca actccagagc gtgaaggtga ctactccaca tctgcaatca 2700 atactacttt ccataccgga aaaccactca caaaacgact attaattacc aaatcttagc 2760 tgggtttgga atagggttta tagtttctat tccctgtaca ttagctctct cctactttat 2820 ctacaataaa gtttctgaca ccactaggga ggtagtgaat gaattcagta ggccgtagaa 2880 ataaccgcag gagaaatggc ccaaggagag caaggcgcgc tggcgcagtt cggagaatgg 2940 ttgtggtcca acccaatcga gccggaccaa aacgaagaac tcgtcgacgc acaagaggag 3000 gaggggcaaa tcttatatct ggaccagcag gcaggactga ggtattcgta ttctcagtca 3060 acgaccttaa ggccaactcc tcagggacaa tcaagttcgg tcccgacctt tcgcaatgcc 3120 cagcgctttc aggtggaata ctcaagtcct accaccgtta caagatcaca aacgtcaagg 3180 ttgagtttaa gtcacacgcg tccgcctcta cagtcggcgc aatgtttatt gaactcgaca 3240 cttcgtgctc acaatcaacc ttgggtagct acattaactc attcaccctc tcaaaatcag 3300 caaccaaaaa cttcaccgcc caacagattg acgggaagga attcagggag agctcggtga 3360 atcaatttta tatgctatac aaggcaaatg gtagtacatc tgataccgcc gggcaattca 3420 tcattacaat acgcgttgcc aacatgactc ccaaataggt agactcctca acaccagagc 3480 ctacacccca accccaacca gagcccaaac ctgatccgca gccaacacca gagcctcaac 3540 acaaacggtt tttcgagtac gtaggaacgc cctatgttat catacaaact agggagagtt 3600 cggatagcat tgccgtcaag tcaatgaatg atcaatcctt tcagtacatc gaaaacgaaa 3660 cttctgagca aagaaccgtt caggcatggc ggacctccaa caacggcgtc caagcgcaag 3720 cagcatttgt atttcctata cccgctggag agtatagtgt taatatttct tgtgaaggtc 3780 tacaatcagt ggaccacatt ggaggaaacc gagacggata ttggataggc ttaatagcct 3840 accaaaatca aagcggggat tattggggcg tgggcaacta tgctggctgt gatataacca 3900 atcttctagg aacaaacact tggcgtccag gccatgaaga tttggaatta gacggctgca 3960 aattcactaa tggacagata gttgaaagag acgctgtgat atccttccat gttaaagctc 4020 agggtgctga ccccaagttt tacctcatgg cacccaagac catgaagtct gacaagtata 4080 actatgtcgt gtcttatgga ggttacacag acaaaagaat ggaatttgga tccatatctg 4140 tcactgtgga tgaatctgat gttgaggcac agcgctacaa caggcacact agtacggttg 4200 ggaaagcaga aaaccgagat tatgggtgga tgagtgttct accaccctat gatcctaacc 4260 aagtgccgga gcaagaggaa gaacaaccaa tggttgacaa ggagatggat tcgagacctc 4320 ctgtcgaacc cccttcccca acctccgaca ctgaggctga aagagccttt gacttgagag 4380 aggaagaact tacgagggcc agacttgaat acgaggcagc cactgaatcc atacctgatg 4440 ctgccccgga cgttttaccc tcaaaatctg aaatgagcag tagaccaata gaccatgatg 4500 gaaggtcttt accaaaacct cagtcaaaag aagtcctcgg cacataccaa ggccagaaca 4560 tcacaccaga tgatgttcct cctgtcatag ctgaaaaatt gcgtgaagtg aacagagcac 4620 catctactct gctttacgac aggcagccaa aaacaccaaa aagctttctt tcccgtttcg 4680 tagaaaccaa taaaactagc ttggcttccc ctggttcaca gtcttccaca tcaggaatga 4740 caagagaaca agcctcagaa tacaccagga ttaggaagtc aatgggcctc acggcagcta 4800 aggagtacaa agccagttta gctgacacat ggtgaagatc aacaccactc gcaaattcgg 4860 atcctgggaa acaggcagaa cttcggttcg taagctcggg taaactagtc ctttaccgtc 4920 gtatcgtact ttgtgtggcc gatggatgat ctacatgtga tagcagtctg tgtgctgtcc 4980 acgacagtgt tcgcagcggc agtactcaca attagcgcaa ttgctagtat ttgcggcagt 5040 gcatgtgcaa ctgccaacat tcaaagggtt taatctgtga tacaacccac caaaatacac 5100 ggggaacaac aggttcagcg agggggctaa cgacccccag caattggctg gttctgggag 5160 acttaaatga cctcctatag aacgaagtgg aatcccccca ctgatcaaat tgggaagcat 5220 gcttctgtgc tatacactgc cccagaggac actgggtaaa caaatctaac cacccaactc 5280 aatgaaatga gagcggaggt ggcggggtgg gtgacctcgt gatgtgcacc cgatcgtcag 5340 gattgaagac gttaaaactc aacgacctag tgcaagtcgt taaactgact cgggtggata 5400 caccacaccc ggcccaactt ggaggcatac ccacgatacg aaacgtgggt ttcttggagc 5460 cactacctgt gatgcaaggt agggtatggg tcttagcaag ccctgcgcca ggaaatggac 5520 ataaaccata gcaatccccc aagtcatctc ggcaaaccac aggtgaaccg tgccacaggc 5580 ctgactaccg aaaggaaaat cagtatccaa cacagcaatg tgttgggggt cacacccttc 5640 ggggtactct taacgctgac actcgaaaga gcagttcggc aaccc 5685 //