ID AY206452; SV 1; linear; mRNA; STD; VRL; 11772 BP. XX AC AY206452; XX DT 31-JAN-2003 (Rel. 74, Created) DT 31-JAN-2003 (Rel. 74, Last updated, Version 1) XX DE Citrus tristeza virus strain VT defective RNA CTV-L5', complete sequence. XX KW . XX OS Citrus tristeza virus OC Viruses; Riboviria; Closteroviridae; Closterovirus. XX RN [1] RP 1-11772 RX DOI; 10.1006/viro.2002.1472. RX PUBMED; 12093181. RA Che X., Mawassi M., Bar-Joseph M.; RT "A novel class of large and infectious defective RNAs of Citrus tristeza RT virus"; RL Virology 298(1):133-145(2002). XX RN [2] RP 1-11772 RA Bar-Joseph M., Che X., Mawassi M.; RT ; RL Submitted (22-DEC-2002) to the INSDC. RL Virology, Plant Protection Institute, Agriculture Research Organization, RL Volcani Center, Bet Dagan 50-250, Israel XX DR MD5; 5b976923eb118d0fee689b639deaf4d2. DR EuropePMC; PMC2244595; 18199320. DR RFAM; RF00193; CTV_rep_sig. XX FH Key Location/Qualifiers FH FT source 1..11772 FT /organism="Citrus tristeza virus" FT /strain="VT" FT /mol_type="mRNA" FT /db_xref="taxon:12162" FT misc_feature 1..11772 FT /note="defective RNA CTV-L5'; contains intact ORF11" FT misc_feature 105..10784 FT /note="similar to replicase genes ORF1a and 1b" XX SQ Sequence 11772 BP; 2766 A; 2395 C; 3112 G; 3499 T; 0 other; aatttctcaa attcacccgt accctccgga aatcacgtcc ggacgctgcg ggaatcggtg 60 taaatcccgg caaattgccc actacgccca tacaaacaaa tatacatgtc gaaactcgga 120 gctcgcttca agtcctcgac tttcgctgta cgcaggcatt acatcatctc gcgcatctgg 180 cgctttaaca ccgttggagt cctgcacttc ttcggtactg aaacaaccac caaggtggtt 240 aaggaatttt cggctcctca gccgatagtc cctctacgga aatcctgttt tccgttttct 300 gttcgcgctg ctgttcgcgc gattaaagct gccggacgtc ccattgaccg tccgcgctct 360 ggatgcctct gtggcctccc tgttatcgac acatctggtg tcgtacgtgc ctctgtcgcg 420 ggcatttgga ggtattctct gtgtaaacct ccccttactg ccgccgccaa gaagtccatt 480 gccaaggcga agaaagattc tgctttcttt cttagccggg cttcttcact cttctcacgg 540 gaagtcccct gcggcacgcg tcatagactt cgtaggcgcg ttatgaaacg agtagaccct 600 accatgcacg agagtcccca agacgagatc aaacttaagg gacgccgaca tggcaagaat 660 tcttacctcc cgtatatggg ggaagcggcg ttggatgata tccttcgctg gattgagggg 720 gtaaatcccc cgccgtcgat ggtcgccatt ccggtgccca tctctttcgg cgccgtgccc 780 acaacggcat ggtgctctcc tgttgacgcg gctgttttgc ggtgtcgttt agactaccac 840 gccgctgaga cttcctttcg tgacgaaagg aagcacgtga gatacgtcta taatgacgtg 900 tcttctgctg ccaaccgtcc tcgtacggtt tctgccaagt gcgggcgtgt tttcagcggt 960 tctgcgctgg gtgttgaggt cccgagcact agggatcgcc ataccgcttt cgtgagatct 1020 actcacgcta gcgttttctt ctcccggagt tcgccggttc gcatgttccg tcctgggcgg 1080 aataatttct tcactagcgt cgttagtggg cggcgcgtta gttactttag acccggacct 1140 aatggtacgg tgtctgtttt aatgtcggac ggtgtcaaca cggcgcgtct cgacgttgtg 1200 cctcctggct accatgcgta cgctaaagcg ttaggcgcca aagtgccgtg tttgtgggag 1260 tcgtccgatt tggacgatgc taagatacgt gacggccagt gctacgttcg tcacgtatac 1320 gacgtggccc tttacttcgg aaggcgcgtc gatctttctg tgcgccgaac tttgggtttg 1380 tttcccacag tgggtgcact aaaagcttat cttcttcgcg agtacggtcg caactctttg 1440 aaggttccga tgcgcgggac ttacactttt ggcagtgtgt ttcatagcct gtcgactaaa 1500 tcttttgtcg acttgagatc tattcctaac catcacttgg ttggtggtgc gtctgctcac 1560 gtgtttattg ggcagattcg tgttgacgtt cctggtggtg tctctaagcc atcacgagca 1620 gctgcgcagg cgaataggcg tttgcgtgaa gacgggtttt taggtagtac cgattcgtct 1680 tcttcaggag ggtcgagata ctgttcggat tgttcaactc ctcgcagtcc accctctccg 1740 tcgattgttg gaccaactct tggccggata ccaagtataa accggaagtt ccggtttcca 1800 gcaggcactc agttgagtgt ttctatccct aaacgcaacg atgatcgcgt gtatgtatcg 1860 gtcggccaag actttgatga gttgtgccat gccgtgtgta cctacgttaa gaggtacaac 1920 tcgagaaaag cattttacac gcggtttgaa aatggtgatg atttcgccgt cattgctgcg 1980 gcttccgtcg gaggtcttca cgtgttcgtg aaacgcggta actttacggc tcggttccct 2040 atgtcggctt caaggtatga gcatcattat gatcgaagta tgaaaggcgc cggtttgtcg 2100 tgggtgcgga agagtcggtt tccgaatgtt gaagttatac gccgtcgaag gagtcggacg 2160 ggcggttctt tggctagctt tccggacgcg aatttacgga ttaattctga ccaaccgtcg 2220 gattctgttc aggcagttcc ggtgtcaggt gagaattctc catcgtctcg aggagcgtct 2280 tcgccccgac gtgatcctgt tgaagggtcg ggctggtata aggtgggttc tcctagtcac 2340 cactcgagtg ccgctcgtgg gcaacgttcc actgaacgtg ggaagattgg ggatttcagt 2400 tttccgagta gcaccgtgta taatgcacat gtagacgagc gtgcttataa gcgtgtgttg 2460 aaattgcggg acacgtcggc gtcctttttt cttcgtatag ttttggctcg tttgtcgagt 2520 tatcggcctc ttagtgacga gttctttaac aagtgcgtta cttctcggtt cgtagcttgt 2580 atcgaggcgg ttgaatcggg tctcgttaca gtacactttc gatccgacgt gtttcgcgcc 2640 tcgttcccgt ttggagttta tttgtatact cgtcacgcgt ttgatattta cagtggtaag 2700 ctcctgcaac tagatagcta cgggttctcg gaagacctga aggacggtta ctgctatatt 2760 cgtcatatcg ctgaggtctg tttgagtatg ggaaaagttt tctttaggag ggacgttaac 2820 ttaggggcgt tcccttatgt tttcgaggta cagcaccgtc ttgagcggtt gtacggtaag 2880 cgggctgttg aatacggcgt tagaggttat ttttcagcaa cgcgtcttta ccactgttgc 2940 tttaccgatt cgccgagacc cttcaaatct ttaaataagt atcataagat gggtggtgaa 3000 gaaggtgcgt tattaatcac tgacactgat agattacgtg ccgtggggag tgcttacgaa 3060 aaggtgaagg ggcgtttgcc tgattcttta cttgttcgat cggtggagaa agatttgata 3120 gaattcaatc aaactctggt tgatacgcaa cgggctagac ctggtgttgc agtacctttt 3180 cagatgagtg agaaccaaca ggtgatgctc actagagctt atcctgagtt taatataaac 3240 tttactcatt ccgtacactc cgatcacccc gtggctgcgg gttctagaat gttagagaat 3300 caccttgttc gtaaatacgc aggtagcgat tattcggacg taggtggttg cccattattt 3360 catttacgtg cgggtcatac aggagttcac gtttgcagac cagtgtacga tattaaagac 3420 gcccaccgta gagtcgttcg tcatcatcaa cttagtaaag tagcttttga tcacactgac 3480 gggtctaagc aggttggtgc tgtcaatacg aacaccgtgt gtggtaacgt tttaggggag 3540 tgttttcatg cgtctgatgc gattgttatg gtgcaagttt atgacgtgcc attgcgagag 3600 ttgtgtagag ctatggtgaa caagaaagct tcggtgtgct atatgaccgt ggttacgcct 3660 ggtgagctgt tggacgcctg tgagtccttc ttcatcaaag agttagactg ttcggtggag 3720 ttggaccggt cgccgaatag ggttatctac tgttttaaca attcacggta tacgcatacc 3780 tattctacga tatgcgaata catgcgtact ccttgtgtgg tggtggatgg ttttctgttc 3840 actatagaga tggtttcact cagatgcaga gttaactatt attgtatcac caagtcgcgg 3900 gtttgtccga gaatcagcga gattaaacgg ttacgctatc gtcggtgtga tagtgacttg 3960 atcaggatca agattccgcg gtactctaat aagactcgta gttgtttacc agggtgttat 4020 tatttgtatt tagacgctaa gttcgtgagt cgtgtgtacg aatacgtggt taataattgt 4080 gttgtggtga atgctaagac ttttgaatgg acttggaact acattaagtc ctgtaagtcg 4140 agggtggtca tcagtgggaa gattatccat agggacgttc ctattgggtt ggagtatttg 4200 gatgggtttt ccgcagttat gttgtccgcg ggcgtgaaag gtaggcagaa cgcagaaacg 4260 ttttctaggc gtctacgggc cttttcaggc gacccttctc ttttcgaatt ggtgaggttc 4320 gccatttcag agaagtgtcg cgatttattt gtgggcgttc aggaggccgt agagagatac 4380 gtgaaatcgt acctcagaaa ctcgtttaat ataagtttcg cggacttgtc agatccgttg 4440 cttaccatta gtgagtattc ggagttagac gttcctatcg atttgccggg ttttggctgc 4500 ataacggaag gagatgaggc taaactcata gaagatgggg ttaagtcggc tttactgcga 4560 aaagcgttcg tgacgaggcc gcaactcatt ctcgaaaggg gcggtacgtc agagatcgtt 4620 ccttgtgggg atgatgatgg tttaggcagc gacggttctg acagtttact cgggtccggt 4680 agtgattcgt cttctaaggc cagtcctggt ggtttgcggg ccgggcgccc ttcactgttc 4740 agaagcttgt tgaagaagtt gggtgggggt ttttgtatgg ccaagaggtt attggacttg 4800 ttgtgcgagc gattagttgg ttcgttgtcg cgctttaagt tcggtaccac tcatttaacc 4860 tcattcttta gcatgttaca cgctaagctt tcgcgtaatt tcttcgacga ctcgattttt 4920 accgctgttt gggacgtggt gatgaatttg attagaatcg tcaacggggt gaccaggacg 4980 aaattggagt gttttcgcaa tgttcttcgg ttaattccta cgttgtgttc tggttgtaag 5040 gacttcgcaa aagactttgc aaacatgtgt aggttagttt tgccattttc tacggagttc 5100 ttcagtaaaa gctatactcc cctgtgtcgg tttagtttgg atgtattcga tgtcggactg 5160 attgagattt cagcgcgtaa catgggacta gagacttgtg tttcgatggc ttcagccatt 5220 tttaacgtcg tacttaccta tcctctggga agtattagct ttcccgtcgt atgcgcgaga 5280 gtttttggcg ccctcgctat ggaagtggga tcaaactatt gttttaagaa aagtttcggc 5340 aaacctgaaa ttttaggaga ggacgctttt cgtagaacgg taagtatggt gttgagcgct 5400 aaggctttcg acaaactgtc gatcgacagt aagggtttag ttaggtgttc cggtgttatt 5460 cctggagttt tgaggatagt attttcgtct ctgttttccg atgccgacgc gtgggtgggt 5520 tatagcaaac acgaagtttc ctcacttccc ataacacgtg tagcgcgaaa aagttatctt 5580 tcgcgttgga gcagactaag gaagcgtgca tcgcctttat acgattcgtc taagaggatc 5640 ttagcgtctt tgacttcgga gattcacgag tctttccaaa atttggaact aactaatggt 5700 gctaagtcct tgtatggaca tgtgagttct gtactctcag cgtctaatag tgtggttagc 5760 aaggcaggaa acgccgttgc agcagttaaa gcggcgggga gtggtcttag taaacgtgtg 5820 aggcgtattc gtccttcttt tcgcctagct cggtgtgtta atgaacagac cagcgaatac 5880 aattctgcta gtgacgaatc tgagttggac gagtcgttgc ttagtgacac gcccggtctt 5940 cgtggtaacg ggaagtgtaa agctttgttt cgtgtcattt ccggacgcgt ttcggtatgt 6000 tgtaggcgcg ctgtagaagc cttgaagcgt ttagtcctac acgtcggtga ctgcttgtac 6060 acgcgcatta tggactcttt tgtgaggtta tttgttgaaa ccaatgttgc agtcgggaag 6120 tgtgaatctt tcgtcgtcga cagtacccga aaaatttctg atttagtaaa cgggtatatc 6180 acatggcgca atcttcattc cggtgcgtac acgacgactc cagggttatc tggtggtagt 6240 aggagttctc tttccaggtt cttggatggt ggtctcacgg tgtgtaattc gaaatattgt 6300 taccgcgtgg ttgacaggtt ttcgatgaga cctttattga gtctagtcca tcggatgagg 6360 actgcctcga taaacgtgtt gttagaattc ttgaagaacc tcccagtttg tttagtttcg 6420 atatacactt taatagagtg tagatctagg attttccctt tgaaggaatt tctttggggc 6480 ttttgcgttt ttgtttggaa cattgttaag gaactttcta tatgcattta cggaagtctc 6540 cccgtttgcg ttacgaggtt gtgtaatagg gcgttccgtc gcggttccaa cgaaggtgac 6600 gtcggtacgc ctcaagtgat caccgaagcc gaaaaccgaa tcgagttttt gcgagaagtt 6660 ctcgccgaaa tggcacggta tcgtgcttct ctcgagatac ccgtgccagg gtcgcctgat 6720 agtccttttg ttccaccaac atacggcgag attgaggagt tatgtaacga ttcctctgac 6780 agtgcccgat tgataggtgt ggacaatggt ttagattcag tgcccactga aggcgaagca 6840 gaactagatt cggatggtga tagcgacgac tcaatacctt tggatcgcga ctttgagcaa 6900 atcggaggtc ttggcggaag cggtaacgtt gacgtctttc gtttagggct gaagttcgtg 6960 tggaggatgt tgcgtaattt gtttaactta agagccgtta aattctccta tgggttagct 7020 cttcagtgta tatttaacgg cggttcaatg ggccagttta cgtcgcgact gttattcagt 7080 ttcggcaact gcttaccgtt tgagctcttt agacacgttt gtagtgtgag gtggctgtca 7140 aagagcttag caatacgtgt tcgtaacgct agaatttgtg acgaagaaac ggtcgaacgt 7200 ttcttcagtt tttcgcgaat tttgtacgat tcgcgttact tatcggacgt gttttcggtg 7260 ttggagaggg tcgattttta cttaagttat ctattctcgt tgccgaagag gtgtcttacg 7320 cgtaaccgta gtgtccgagt tacgcgtcga gcgccagttc gcgtgattag ggacatgggg 7380 cttgtggaag acggcaagaa gtctttaacc gaggtgttga actctttgga ctcattgaaa 7440 gtgtccgacc gtaaagggaa gtcagcactt attgaaagtg atggttccga ctccgagagc 7500 ggtcattcat tcggttccat ttcattcgga tcggttaaag aggaagtttt agaagcagtg 7560 aacagtggtg tcgtatccga aaaagctcca ctgatgaagc atgcggatgc actaagcagg 7620 ttggagccag accttagtgg taaaaaggat cttcctattg tcaggagaag ttttacccgc 7680 ggtgaatcta caggtacgaa accggcagga agcttgtgtg tgtacttaac cacgttgaat 7740 tcttcattcg gttcggtgcc tgacctgtat cccgtcgcac gtgacataac gtacaagaag 7800 atgaccaacg ccatgccgaa gttttattac tcgcaaaagg taacgttgta cgaacttcat 7860 ggaaaattga gctcgtactg ggatgaattg aagacggtag gttttaatag gaagttggcg 7920 aagatggatt tagacgatga cgttgatgtc gtcgatttta acttgaaggt aatagtgggg 7980 aggcatggta cccgtccttt cagaaatact gtgaactctc acgagttcat gttttgtgat 8040 gacgggttgg tgctttgccc gggaccgaaa aaacgtgact ttgctctgat ctctagtcaa 8100 acgcaattcg ttgctgcgaa ctcattcctg cgtgctgtgg acggtaaaga tctgacgttc 8160 actaattcgg agcatagtct tatagtttat gaggctcgtc ccggtggtgg aaagacgcat 8220 tctttggtga cgtatttcgc ccgatatggt accaaagtgt cttgcttggt ggtgaccgct 8280 aacaaaaatt gtcaagcgga gatttctcaa agaatctcta gagagttaat ggatagaaag 8340 atgcttgcta aacacgttgt taaaaccgcc ggtagagtgt tcactgtgga ctcttatctg 8400 atgaaccata ttcgactcaa gactgacttg ttgtttgtcg atgtgtgttt tatggttcat 8460 gctggagcaa tcggagcggt tgttgagttc acttcacgta aggctgtggt tttcttcggt 8520 gatagtagac aaattcatta tattcaccgg aacgattttg gtgtttcatt gttgcatgac 8580 atagacgcat ttatagagcc acagcaccgc atttacggtg aggtgtccta caggtgtcct 8640 tgggacatct gtgagtggtt gtctaaattc tatccgagac atgtggccac tgctaacact 8700 ggtagtatcg ggagatcgag tgtgtctata gagataatta atgggtgtga cgatgttcct 8760 tacgatagta gcgcgaagta catcgtttac acacaagcag aaaagaacga actgcaaaag 8820 caccttggtc gtttaaccgt agccggaact aaagcggtgc ctattgtgaa cacagtgcat 8880 gaagttcaag gtgaaacata taagaaggtt cgtttggtaa ggtgcaaata ccaagaggac 8940 actccttcct gttcagataa ccatgttgtt gtggctttaa ccaggcacgt cgactcctta 9000 acttactccg ttttgaatag caggagatac gacaagaccg cttccagtat agatgaagcg 9060 agggagattt ttgacaaatt tcgttcgacg aaccattctc acggttgttc gacgttggaa 9120 tggtaccttg agaaataccc tactgaatat aagggtagta aagcatcttc ggcgccgtta 9180 agttgtatta acgagttgct taacgaggtc gttgtcggtt cttcggttgt gcagttggga 9240 gatacttcag aagaattaag ttcccgtcct tttgagtctg gatgtgacaa cattaccgta 9300 agggacactg caccccctga ttcaggtaat ctacacgaac cggctcgcgt tcggcgtggt 9360 aaggtcgcaa cgaattccgc caagaaaagc gtccctacaa gaaaatcttc tgtcgtacga 9420 aagtcgtaat tacaacttta taaagacgga gcgatttgtg gggcccgaaa atttcggtaa 9480 agtcatggct gcggctgtta ttgagaggtg ttttaggatg gacgaagtgg ccaagataag 9540 aagtgatgtt attgctttga ctgaagccaa tattcaaaag tggctcgata aacgtactcc 9600 gtgtcaggta aaatctgtgc aggccgaatt gaagttacca tttgctgtgg aagagcaaat 9660 caccaactac aaactaatgg ttaagcgtga tgccaaagta aagctagatg attcgagtct 9720 gtccaagcac cctgccgcac tgaatattat gtttcataag aagtttatta atgctattta 9780 ttctccatgc ttcgacgaat ttaagaatag ggtgttgtcg tcactaaacg gtaatatagt 9840 gttcttcacc gaaatgacga acgctggatt ggcggaagtc attagaagga ttataggtga 9900 tgacgataat ctttttgttg gggaagtgga tttcagtaag ttcgataagt ctcaagattt 9960 gtttgttaag gagtacgagc gtgcgttata tgctgagttc ggatttgatg cacaacttct 10020 cgacgtgtgg atggaaggcg agtaccgcgc tagggctacc acgttagacg gtcaactgag 10080 tttttcggtc gacggtcaac cgcgttcggg aggttcgaac acatggattg ggaactcttt 10140 ggttacactg ggtatcctat ccttgtatta cgacgactca aagttcgagc tactgcttat 10200 atctggtgac gattctctga tctattcaaa agaaaagatt agtaactttt cttcagaaat 10260 ttgtctggag acaggtttcg aaactaagtt tatgtctcct agcgtaccat acttttgttc 10320 gaagtttgtg gttcagacag ggaacaaaac gtgttttgta ccggaccctt acaagttgtt 10380 ggttaaactg ggggctcccc aatacaaatt gactgatgac gaactcttcg aattgttcac 10440 ttcctttaaa gacatcactc aggactttgg tgatcaggtg gtcctagaga aattgaagtt 10500 gttagtagag actaagtacg gctttactag cggaactact atgcccgctc tatgtgctat 10560 acattgtgta cggtctaatt atttgtcttt tgaaaggttg tttcccttta ttagaggttg 10620 gtatgttgtt gatgctttga agtttagaca actgaggaaa ttcgccaatt tgatctgtga 10680 acgtgtggtt tacgatcacc gcgtgggtta tttttcgtac tttgacaatc cgtttgctaa 10740 acccgacgct agcgatggtc aagccgatga cttagcgaca ggctgatagg ttaatacgct 10800 tctcagaacg tgtggttgta ttaactaact ttaattcgaa caaattattg ttaagagtct 10860 gcgagttacg atggacgata ctagcggaca aactttcatt tctgtgaact tttctgacga 10920 aagcaacaca gctagcactg aagtcaaaac cgtaagtttg gaagcggatc gcttggaatt 10980 tttacggaaa atgaatccct ttattatcga cgctttgata cggaaaacta gttatctggg 11040 tgctcgcttt cgcgcgagaa taataggagt gtgcgtggat tgtggtagaa aacacgataa 11100 ggcatcgagg actgaacgta agtgtaaagt caacaacaca caatctcaga acgaggtggc 11160 gcatatgtta atgcacgatc ccgtgaaata tttaaataaa agaaaagcta gagctttttc 11220 taacgcagag atgtttgcga tcgatttgtt tatgcatacc aaagaaaggc aattagcggt 11280 tgatttggcc gctgaaaggg agaagacgag attggctcgt agacacccga tgcgttctcc 11340 ggagaaaact ccggaacatt ataagttcgg tatgactgct aaggcaatgt taccgaacat 11400 caacgctata gacgttggtg ataacgaaga cacttcgtcg gaatacccag tgagtctgag 11460 tgtttcaggc ggagttctcc gtgaacacca cttcatctga ttgaagtgga cggaataagt 11520 tccttgcgga actttatgtc gggttggtaa aaacccttat gatggtgatg tatcactaga 11580 caataaccgg atgggtaaag tctttaaaat gatcgagggg aaaattaacc atatcctctc 11640 gttggtctaa gctcccacag agtgtagtgg tctcaagtga ggcttaacgt atgcgtgaac 11700 caaagaagtt ctccttagag tgtgtgttgt ttacccaaca cactgtccct atggggggcc 11760 aacataggtc ca 11772 //