ID AY196959; SV 3; linear; genomic RNA; STD; VRL; 5589 BP. XX AC AY196959; XX DT 03-MAR-2003 (Rel. 75, Created) DT 20-DEC-2004 (Rel. 82, Last updated, Version 5) XX DE Potato mop-top virus isolate 54-15 RNA-dependent RNA polymerase gene, DE complete cds. XX KW . XX OS Potato mop-top virus OC Viruses; Riboviria; Virgaviridae; Pomovirus. XX RN [1] RP 1-5589 RX DOI; 10.1023/B:VIRU.0000036385.87739.e4. RX PUBMED; 15284485. RA Pecenkova T., Moravec T., Filigarova M., Rosecka P., Cerovska N.; RT "Extended sequence analysis of three Danish potato mop-top virus (PMTV) RT isolates"; RL Virus Genes 29(2):249-255(2004). XX RN [2] RP 1-5589 RA Pecenkova T., Cerovska N., Moravec T., Vlcek C.; RT "The partial nucleotide sequence of RNA1 of PMTV isolate 54-15"; RL Unpublished. XX RN [3] RP 1-5589 RA Pecenkova T., Cerovska N., Moravec T., Vlcek C.; RT ; RL Submitted (14-DEC-2002) to the INSDC. RL Virology, Institute of Experimental Botany, Na Karlovce 1a, Prague 6 16000, RL Czech Republic XX RN [4] RC Sequence update by submitter RP 1-5589 RA Pecenkova T., Cerovska N., Moravec T., Vlcek C.; RT ; RL Submitted (29-AUG-2003) to the INSDC. RL Virology, Institute of Experimental Botany, Na Karlovce 1a, Prague 6 16000, RL Czech Republic XX RN [5] RC Sequence update by submitter RP 1-5589 RA Pecenkova T., Cerovska N., Moravec T., Vlcek C.; RT ; RL Submitted (01-OCT-2003) to the INSDC. RL Virology, Institute of Experimental Botany, Na Karlovce 1a, Prague 6 16000, RL Czech Republic XX DR MD5; 33ae8335c1335095f6459636cab8278f. XX CC On Oct 1, 2003 this sequence version replaced gi:34333913. XX FH Key Location/Qualifiers FH FT source 1..5589 FT /organism="Potato mop-top virus" FT /segment="RNA1" FT /isolate="54-15" FT /mol_type="genomic RNA" FT /country="Denmark" FT /db_xref="taxon:37128" FT CDS 75..3986 FT /codon_start=1 FT /product="RNA-dependent RNA polymerase" FT /note="RdRp; putative" FT /db_xref="GOA:Q80A46" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR013664" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:Q80A46" FT /protein_id="AAO45180.2" FT /translation="MDQSILSKITSDDYVNAILHTSATRVGSDLHNAMCNVIVDQIKDS FT TEKNKKKKKIDVKRNLNEDQIQLLAELFPERRVVTSSVHRGTHSMAAAMRKIETDVIFT FT SFPKNGVIYDIGGNWATHAKRDDGGFVHCCCPILDFRDAQRKMTRLIDFNRFIDDAKVV FT SAEKAAVAAQIKKDCDLISENAKKDAYDANDLNGTWFCQNKFEDCVYDHSTLGDGKKEA FT YGMAIHSIYDIHLVDLVSAMERKKMRVLKGTFLFSADIIIGKKRGELPSVNGFYIIDGE FT SIKYSFYDDPNCGYEHNLNSLMLYVTKTFVKAAGGAVYYLELTEMRGDTMFFTITDASE FT ARVMGVLHDSSTKCLPLNKRDLVVFPLFDIDRATDELVFREELLSREFVNRALEYAFRL FT KDNQVTAEGLISYFASTNNAVVIGGSARKTSEKVDPKLLPMITTTLMVYQELQKAKQKR FT VLGKLKSKVKEELTLSGILESVVHRVFGSQSLYQRGLGVFAKWMQYSYGQDLVGIHDVP FT LYLEINDRIKLGSALKNVNGFSLSFSELDEKVSLYEEYERERQRISDEIVSEKIGLIGE FT GYVKVGESSLKPKQKVASRDGMAQWVSGECHLYNTMKCEEKPVEKPRRFSKVVLEEWIS FT EGNCFALNNSFGDEVHWFDSLKEACGRAWRKQVSAVTFSDAEYFDNIENTENEELEEEE FT VIKTTEQVEQDWPIGNLPDVDPDDSASAQVCLTESASTSSDEDCDPMEQLIVAACERAL FT ATKKFEEVTMDSQVVQSEEIEIVREGEHAHANLSSGESESSSQSQELVAVGSVPLSKWA FT QMVEDSEVRARQCAVDHDLSWDEVKYAKMPERPEEAEGDDFRTKAKREFLWYLKCKLVA FT DKSTLVEIMRDFIYGQFHSGACETPKNACFLSYEKNVCGEWMFGKRYRHPSKGASSYAV FT RFTREDWKRAKLIKLQWKNAKAEENGEMSSDNSDKPIVPQGETGIYLFCDITFLMNEIP FT ILNRLEISFKKRVQRRAPRITLVDGVPGCGKSTYVVKEANLVNQYVVTIGREAAEDLRE FT RFKSERNATATQLKRVRTVDSYLLNDTQSRANVLHFDEALMAHAGMVYFCADDLSARSV FT ICQGDSQQIPFINRVESITLRYSKLEIDNVVEKRLTYRSPLDVASYLTKKNFYGTSVVT FT SANPLVRSLKTVGPRDGMTSIYSIPKIPGTQYLTFLQSEKEEMRQYLGRGNWNVNTVHE FT SQGKTYDNVVLCRLKATDNEIYPGGRNSSPYMVVGVTRHRRSLVYYTKAEDKLYFDLAE FT MLSVQEGKLMKHLHEEGVK" XX SQ Sequence 5589 BP; 1679 A; 834 C; 1476 G; 1600 T; 0 other; tggttggaga ccagtgattt tgaagcgacc gcttgcgata aaacgtttca aaaaatttgc 60 tgttgttata ttcaatggat cagtctattt tgagtaaaat caccagtgat gattatgtga 120 atgcgatact tcacactagt gctactagag tgggttcgga tttacataat gctatgtgta 180 atgtaatagt agatcagata aaagatagta cagaaaaaaa caaaaagaaa aagaaaatag 240 atgtaaaaag gaatcttaat gaggatcaga tacagttgct tgctgaactt tttcctgaaa 300 gaagagtggt gacatcttca gtgcacagag gtacgcacag catggctgcg gccatgagaa 360 agatagaaac cgatgttatt ttcacctcgt ttccaaagaa tggagtgata tatgatattg 420 gtggaaattg ggcgacccac gccaaacgag atgatggtgg ttttgtgcat tgttgttgtc 480 cgattctcga ctttcgtgat gcgcagagaa aaatgacaag attgatcgat tttaatcggt 540 ttatcgatga tgctaaagtg gtgagcgctg aaaaagctgc agtagcggcc cagataaaga 600 aggactgtga tcttataagt gagaatgcga agaaagatgc ttatgatgcc aatgatctta 660 atggaacttg gttttgtcag aataagtttg aggattgtgt atacgatcac agcactcttg 720 gagatgggaa aaaagaggcc tatggtatgg cgatacacag catttatgac atacatttgg 780 ttgatcttgt gtctgctatg gaaagaaaga agatgagggt acttaagggc acttttttgt 840 tttctgctga tataataatt ggaaagaaaa ggggtgagtt acctagcgtc aatgggtttt 900 acataattga cggtgagtca ataaaataca gcttttacga tgatcctaat tgtggctatg 960 agcataatct taactcgttg atgttgtatg tgacaaaaac ctttgtgaaa gctgcaggtg 1020 gtgccgttta ttatttggaa ctgacggaga tgaggggcga tacgatgttt tttaccatca 1080 cggatgcttc tgaagcgaga gtgatgggtg ttttacacga tagctccact aaatgtctgc 1140 ctcttaacaa acgggatctg gtggtttttc cattgtttga tattgacagg gccaccgatg 1200 aattggtatt tagagaagaa ttgttaagca gagagtttgt aaatcgtgct ttggagtatg 1260 cttttcggtt aaaggacaac caggtgacgg cggaaggttt aatcagttac tttgcatcta 1320 ccaacaatgc cgttgtgatc ggcggttccg ctagaaagac ttctgaaaaa gttgatccta 1380 agctgttacc gatgattact accactctga tggtttacca agaattgcag aaagctaaac 1440 agaagagagt gttgggaaaa ttgaaaagca aagtgaaaga agagttaacc ttgtcgggta 1500 tactagagag cgtggtgcat agagtgtttg ggagtcaaag cctgtatcaa agaggtttgg 1560 gcgtgtttgc taaatggatg cagtacagtt atggtcaaga tttagttgga attcatgatg 1620 tccctttgta tttggagatt aatgaccgga ttaaattagg gtctgctctg aaaaatgtta 1680 atggattttc actgagtttc tctgaattgg atgagaaagt gagtctatat gaggagtatg 1740 agcgagaaag acaacgaata tcggatgaga ttgtcagtga aaaaattggt ttgattggcg 1800 aaggatatgt gaaagtcggg gagtccagct taaaaccaaa gcagaaagtt gcgtcccgtg 1860 acgggatggc gcagtgggta agtggtgagt gccacttgta taacaccatg aagtgtgagg 1920 aaaaaccagt ggagaagccg aggcgcttta gtaaagtagt tttggaggaa tggatttctg 1980 aaggtaattg cttcgcactt aacaacagtt ttggtgacga agtgcactgg tttgattctc 2040 tgaaagaggc gtgcgggaga gcatggcgga aacaggtttc ggctgtaaca ttttcagatg 2100 ctgaatattt tgataacatt gagaatactg agaatgagga acttgaggaa gaagaggtga 2160 ttaaaaccac tgaacaagtg gaacaagatt ggccgatagg taacttgcct gacgtcgatc 2220 ctgatgactc tgcttccgct caagtgtgtt taacggaatc agcttcaact agtagtgatg 2280 aagattgtga tcctatggaa caattgatag tagcggcttg cgagcgagcg ttagcaacca 2340 aaaaatttga ggaagtcaca atggattcgc aggttgtgca aagtgaggaa atagagattg 2400 ttcgcgaagg cgagcatgct catgcaaatt tatcaagtgg tgagtcagag agttcaagtc 2460 aatcacaaga gctggtagcg gtcggtagcg tacctctcag caaatgggcg cagatggtcg 2520 aagactccga ggtcagagct agacaatgtg cagttgacca cgacctgagc tgggatgagg 2580 tgaaatacgc aaaaatgcct gagagaccgg aagaagctga aggtgatgac tttcgcacga 2640 aagcaaaaag agaatttctt tggtacttga aatgtaagtt ggtggcggac aaatctacgt 2700 tagtggagat tatgcgcgat tttatttatg gtcagtttca cagcggtgct tgtgagactc 2760 ctaagaatgc gtgttttctg tcctacgaga aaaatgtgtg tggagaatgg atgttcggta 2820 aaaggtatcg tcatccttct aagggagcca gctcttatgc agtaaggttt accagagagg 2880 attggaagcg tgctaagttg ataaagttgc agtggaaaaa tgctaaagct gaagaaaatg 2940 gtgaaatgtc atcggacaac agtgataaac cgatcgtgcc acagggcgag acgggaattt 3000 atctgttttg tgacatcact tttttgatga atgaaattcc gattttgaac aggctggaaa 3060 tctcatttaa gaagagggtg caaagaaggg cgcccagaat cacactcgtt gatggtgtac 3120 ccggatgtgg aaagtcgact tatgtggtga aagaagcgaa cttagtcaat cagtatgttg 3180 tgacaatcgg tagagaagct gctgaagatc tgagggagag gtttaaatct gagagaaatg 3240 ctaccgccac gcagttgaaa cgtgtgagga ctgtagattc ttatttgctc aatgataccc 3300 aatctcgtgc caatgtgctt cattttgatg aagcgttgat ggcgcatgct ggtatggtgt 3360 atttttgtgc ggatgatttg tctgcaagaa gtgtgatatg tcaaggtgac tctcagcaga 3420 tcccgtttat taatagagtg gagtctatta cgcttcgata ctccaagttg gaaattgata 3480 atgttgtgga aaaaagactg acttatagat cgcctttgga tgtggcatcg tacctgacta 3540 agaaaaattt ttatggtaca tccgtggtga ctagtgctaa tccattggta aggtcgttga 3600 agaccgttgg acccagagat ggtatgactt ccatttatag cataccgaaa ataccaggta 3660 cccagtattt gacttttttg cagagtgaaa aggaagagat gcgccaatac ttgggaagag 3720 gtaactggaa tgtgaacact gtgcatgaaa gtcagggaaa aacatacgac aatgttgtgt 3780 tatgcaggtt gaaggcgacc gataatgaga tctaccctgg tggtaggaac tcttcgcctt 3840 acatggttgt cggtgttacc cgtcacaggc gttctttggt gtactacact aaggcagagg 3900 ataaattgta ttttgatttg gccgaaatgt tatctgtgca ggaagggaaa ctgatgaaac 3960 atttgcatga ggaaggtgtg aaatgacgcc aggcgtcaaa gtatgaggag ataatggtgt 4020 ccgataatgc tgtgactgtc cctgatgtgg gtaatttggt tgatttgcaa gagatgtatg 4080 acatagcatt tcccgggaat tccattattg acacttactt tgacggttat gaagtggcca 4140 caggaggtct gcagatagat atgaatgctt cccttactta ttaccctaac aggcaaatga 4200 aaatgtggaa agagtgccga ggtatgtatc ctatgcttag gacagctatg cccgagaaaa 4260 gacaaagcgg tttggcagaa ggtttgttgg ctttgaacaa gcgaaatatg gctgcaccta 4320 agttgcagga atctgtgaat gagttcgaag tgattgaaag cacaattgag aaagcaaaaa 4380 aggtattctt tgatgagagt cgtattgata actctaagtt ggaaacattt gaaggtgcgg 4440 cgagatggtg ggtcaaacaa tcttgcacgg cgcaaaagca gatgttagca gatgttagaa 4500 ctctgagtga aatcgatgtg acatcataca attttatgat aaagggtgat gtaaaaccga 4560 aattggactt gtcaccgcag tctgagtatt ctgcgcttca aacagtagtg taccctgata 4620 agattgtgaa tgctttgttt ggaccgataa tgaaagaaat caatgagaga ataagagttg 4680 ctttgaaacc tcatgtgatt tataacacaa ggatgacgtc tgacgagctg gatgctgcag 4740 tggagtttct tgatgtaaga gaagaccatg agtccgttga gattgatttt tcaaagtttg 4800 ataagtcaaa aacttcgttg catattcggg ttgttattga actttacaag ttgtttgggt 4860 tagatgagat gatcgcttac ttgtgggaga agtcgcagtg tcagaccacc attaaagata 4920 gggtgaatgg tattatagcg cagattcttt atcagcagaa atcaggtaat tgtgatactt 4980 atggttctaa tacttggtct gccgcattgt cattgttaga gtcactaccc ttggagaaag 5040 cgacttttat gatatttggt ggagacgact ctttaatatt tttcccgaag ggcatggtga 5100 ttgaagatcc gtgtaggaga ttagcttcta tgtggaactt tgattgcaag ttgtttaatt 5160 tcaaaaataa ttcattttgt ggaaaatttt tgataaaagt gggagaaaaa tacaagttcg 5220 ctccggatcc ttataagttg cttacgaaac tgggcaggaa agacataaaa aattctgatt 5280 tgttaagtga gatttttact tctataggtg ataattataa gtcatatgat gactataggg 5340 tgttagaagc tcttaacgta gcagttatgg aacgttataa gttgcgttgt gatgtcatgt 5400 tcggtttgtt agcgttaaag aaatatataa actcattcga tctgtttgct tctttgttca 5460 gccataaagg caagtaccag cgtgttgaag tgggaagaaa tttcgagtgg tgatcacgag 5520 agatttttaa gatcgaggtg aagccccaca gttagtattc ttgtcgctgc aaagtgtgaa 5580 gcttatttt 5589 //