ID AY186787; SV 1; linear; genomic RNA; STD; VRL; 8969 BP. XX AC AY186787; XX DT 04-FEB-2003 (Rel. 74, Created) DT 05-AUG-2023 (Rel. 144, Last updated, Version 3) XX DE Rice stripe virus isolate CX segment 1 gene, complete sequence. XX KW . XX OS Tenuivirus oryzaclavatae OC Viruses; Riboviria; Orthornavirae; Negarnaviricota; Polyploviricotina; OC Ellioviricetes; Bunyavirales; Phenuiviridae; Tenuivirus. XX RN [1] RP 1-8969 RA Wei T.Y., Lin H.X., Xie L.H.; RT ; RL Submitted (23-NOV-2002) to the INSDC. RL Plant Protection, The Institute of Plant, Jinshan, Fuzhou, Fujian 350002, RL China XX DR MD5; cfa63b381bdb921d03dc30aa8d5968c1. XX FH Key Location/Qualifiers FH FT source 1..8969 FT /organism="Tenuivirus oryzaclavatae" FT /segment="1" FT /isolate="CX" FT /mol_type="genomic RNA" FT /db_xref="taxon:3052763" FT CDS 57..8816 FT /codon_start=1 FT /product="RNA polymerase" FT /db_xref="GOA:Q80A75" FT /db_xref="InterPro:IPR003323" FT /db_xref="InterPro:IPR007099" FT /db_xref="InterPro:IPR007322" FT /db_xref="InterPro:IPR015842" FT /db_xref="InterPro:IPR022531" FT /db_xref="InterPro:IPR029124" FT /db_xref="UniProtKB/TrEMBL:Q80A75" FT /protein_id="AAO31604.1" FT /translation="MTTPPLVIPLHVHGRSYELLAGYHEVDWQEIEELEETDVRGDGFC FT LYHSILYSMGLSKENSRTTEFMIKLRSNPAICQLDQEMQLSLMKQFDPNDSSAWGEDIA FT IGFIAIILRIKIIAYQTVDGKLFKTIYGAEFESTIRIRNYGNYHFKSLETDFDHKVKLR FT SKIEEFLRIPVEDCESISLWHASVYKPIISDSLSGHKSFSNVDELIGSIISSMYKIMDN FT GDQCFLWSAMRMIARPSEKLYALAVFLGFNLKFYHVRKRAEKLTAKLESDHTNLGVKLI FT EVYEVSEPTRSTWVLKPGGSRITETRNFVVEEIIDNRRSLESLFVSSSAYPAELCSQKL FT SAIKDRIALMFGFINRTPENSGRELYINTYYLKRILQVDRNIIRDSLRSQPAVGMIQII FT RLPTAFGTYNPEVGTLLLAQTGLVYRLGTTTRVQMEIRRSPSVISRSHKITSFPETQKH FT NNNLYDYAPKTQETFYHPNAEIYEAVDVKTPSVITEIVDNHIVIKLNTDDKGWSVSDSI FT KQDFVYRKRLMDAKNIVHDFVFDILATETDKSFKGADLSIGGISDNWSPDVIISRESDP FT QYEDVVVYEFTTRSTGSIESLLRSVEVKSLRYKEAIQERAITLKKRISYYTICVSRDAV FT ATNLLSLPADVCRELIIRLRVANQVKIQLADNDINLDSATLLAPDIYRIKEMFRESFPN FT NKFIHPITKEMYEHFVNPMISGEKDYVTNLKSIIDKETRDEQRKNLESLKVVDGKKYTE FT RKAETALNEMSQSEEHYRSYFENDNFRSTLKAPVQLPLIIPDVSSQDNQFSNKELSDRI FT RKKPIDHPIYNIWDQAVNKRNCSIALGHLDELEISMLEGQVAKKVEESYKKDRSQYNRT FT TLLTNMKEDIYLAERGINAKKRLEEPDVKFYRDQSKRPFHPFVSETRDIEQFTQKECLE FT LNEESGYCSLINVEDLVLSALELHEVGDLEHLWNNIKAHSKTKFALYAKFISDLATELA FT ISLSQNCKEDTYVVKKLRDFSCYVLIKPVNLKSNVFFSLYIPSNIYKSHNTTFKTLIGS FT PESGYMTDFVSANVSKLVNWVRCEAMMLAQRGFWREFYAVAPSIEEQDGMTEPDSVCQM FT MSWTLIILLNDKHQLEEMITVSRFVHMEGFVTFPAWPKPYKMFDKLSVTPRSRLECLVI FT KRLIMLMKHYSENPIKFMIEDEKKKWFGFKNMFLLDCNGKLSDLSDQDQMLNLFYLGYL FT KNKDEEVEDNGMGQLLTKILGFESAMPKTRDFLGMKDPEYGTIKKHEFSISYVKDLCDK FT FLDRLKKTHGIKDPITYLGDKIAKFLSTQFIETMASLRASSNFSEDYYLYTPSRRLKNQ FT KQSRSKHVFDAGGNISASVKGKLYHRSKVIEKLTTLIKDETPGKESKIVVDLLPKAMEA FT LNKNECMHICIFKKNQHGGLREIYVLNIFERIMQKTVEDFSRAILECCPSETMTSPKNK FT FRIPELHNMEARKTLKNEYMTISTSDDASKWNQGHYVSKFMCMLLRLTPTYYHGFLVQA FT LQLWHHKKIFLGDQLLQLFNQNSMLNTMDTTLMKVFQAYKGEIQVPWMKAGRSYIETET FT GMMQGILHYTSSLFHAIFLDQPAEECRRDINRAIKTINNKENEKVSCIVNNMESSDDSS FT FIISIPNFKENEAAQLYLLCVVNSWFRKKEKLGTYLGIYKSPKSTTQTLFVMEFNSEFF FT FSGDVQRPTFRWVNAAVLIGEQETLSGIQEELSNTLKDVIEGEGTYALTFIVQVAQAMI FT HYRMLGSSASSVWPAYETLLKNSYDPALGFFLMDNPKCAALLGFNYNVWIACTTTPLGE FT KYHEMIQEEMKAESQSLKSVTEDTINTGLVSRTTMVGFGNKKRWMKLMTTLNLSADVYE FT KIEEEPRVYFFHAATAEQIIQKIAIKMKSPGVIQSLSKGNMLARKIASSVFFISRHIVF FT TMSAYYDADPETRKTSLLKELINSSKIPQRHDYLQEPHTLKPTKVEVDEDSWEFKSAKE FT ECIRVLKQRIKIHTGREERSISLLFENISKSMIGRCTEQNDVRENVSILACALKMNYSI FT FKKDAAPNRYLLDEKNIVYPLIGKEVSVYVKSDKVHIEISEKKERLSTKLFNIDKMKDI FT EETLSLLFPSYGDYLSLKETIDQVTFQSAIHKVNERRRVRADVHLTGTEGFSKLPMYTA FT AVWAWFDVKTIPAHDSIYRTIWKVYKEQYSWLSDTLKETVEKGPFKTVQGVVNSISRAG FT VRSRVVHLVGSFGKNVRGSINMVTAIKDHFSNGLVFKGNIFDIKAKKTRESLDNYLSIC FT TTLSQAPITKHDKNQILRSLFVSGPRIQYVSSQFGSRRNRMSILQEVVSDDPTLHWPDQ FT DTSQKQLEDKFRELAHKELPFLTEKVFHDYLEKIEQLMKENTHLGGRDVDASKTPYVLA FT RANDIEIHCYELWREYDEDEDEAYQAYCSEVEAAMDQEKLNALIERYHVDPKANWIQML FT MNGEIETVEELNKLDKGFESHRLALVERIRVGKLGILGSYTKCQQRIEELDGEGNKTHK FT YTGEGIWRGSFDDSDVCIVVQDLKKTRESYLKCVVFSKVSDYKVLMGHLKTWCREHHIS FT YDEFPTCTQKELLSYGVTKSSVLLYKMNGMKMLRNMEKGIPLYWNPSLSTRSQTYINWL FT AVDITDHSLRLRNRTIENGRVVNQTIMVVPLYNTDVQIFKTSPVDLEQDVQNDRLKLLS FT VTKAGELRWLQDWIMWRSSAAYDLNILNQVRRNKAARDHFNTKPQFKKWIKELWDYALD FT TTPINKNVFITTQGSESQSTVSSGDSDRAVAPLTDEAVDEIHDLLDKELEKGTLKQIIH FT DATIDAQLDIPAIERFLAEEMEVFKSSLAKSHPLLLNYVRYMIQEIGVTNFRSLIESFN FT QKDPLKSVSLSILDLKEVFKFVYQDINDAYFVKQEEDHKFDF" XX SQ Sequence 8969 BP; 3099 A; 1532 C; 1951 G; 2387 T; 0 other; acacatagtc agaggaaaaa taattttgat tttgttttcc acaaaagaat tgaaggatga 60 cgacaccacc tctcgttata cccttgcatg ttcatggcag gtcttatgaa ctgttggcgg 120 ggtatcatga agttgattgg caggagatag aagagttgga agaaactgat gtcagaggtg 180 atggattttg tctgtaccac tccatactat atagtatggg cttgagcaag gagaactctc 240 gcaccactga gttcatgata aagctacgat caaatcctgc catctgtcag ctggatcaag 300 aaatgcaact aagccttatg aagcagtttg acccaaatga ctcatcagcc tggggcgaag 360 atatagcaat tgggttcata gccataatat tgaggattaa gataattgct taccaaacag 420 ttgatggaaa gctgtttaag actatttatg gtgctgagtt tgagagtacc ataagaatta 480 ggaactatgg gaattaccac ttcaaatcac tcgagacaga ttttgaccat aaagtgaagc 540 tcaggtcaaa aattgaagaa ttcctaagaa taccagtgga agactgtgaa tccatatctt 600 tgtggcatgc atcagtgtac aagcctataa tatctgatag cctttctggg cacaagagct 660 ttagtaatgt ggatgaattg attggcagca taatatctag catgtataag attatggaca 720 atggtgatca atgtttcctt tggagtgcaa tgagaatgat agcaagaccc tcagagaaac 780 tatatgccct ggcagtgttc ttgggattca atcttaagtt ctatcatgtt agaaaaagag 840 ctgagaaatt gacagcaaaa cttgagagtg atcatactaa tctgggagta aagctgatag 900 aagtgtatga agtttctgaa ccaaccagat ctacatgggt cctgaaacca ggagggagca 960 gaataactga aacgaggaat ttcgtggttg aagagataat agataacagg cgatccctgg 1020 agagcctgtt tgtgtcaagc agtgcctatc ctgcagagtt atgttcccag aaacttagtg 1080 ccatcaaaga tagaatagca ctaatgtttg gctttatcaa cagaacgcct gaaaacagcg 1140 ggagagaact ttacataaac acttactatc tgaagagaat cttgcaagtt gatagaaata 1200 taatcaggga ttcattgaga tcacagcctg ctgtggggat gatccagata atcagattac 1260 ctacagcatt tggtacatat aatcctgaag tgggcactct gttattggct caaactggcc 1320 tagtctatag acttggcacc acaactagag tgcaaatgga gatcaggaga tccccctctg 1380 taatatcaag atctcataag atcacaagtt ttccggaaac acaaaagcac aacaacaatt 1440 tgtatgacta tgctcctaag acacaggaga cattctacca cccaaatgct gagatctatg 1500 aggccgttga tgttaagacc cctagtgtta tcactgagat tgttgataat catatagtga 1560 taaaattaaa cactgatgat aaggggtggt ctgtcagtga ttcgattaag caagactttg 1620 tatatcggaa gagactaatg gatgcaaaaa atattgttca tgactttgtt tttgatatct 1680 tggcaactga gactgataag agctttaaag gtgctgactt gtcaatagga ggaatctcag 1740 ataactggtc accagatgtc attatatcaa gagaaagtga cccacagtat gaagatgttg 1800 tagtctatga gttcacaaca aggtctacag ggtctataga atctctactg agatcggtgg 1860 aggttaaaag cctacgatac aaagaggcaa ttcaggaaag agccatcaca ttgaagaaga 1920 ggatatctta ttacaccata tgtgtcagtc gagatgctgt ggcaacaaat ttactatcac 1980 ttcctgctga tgtctgcaga gaactaataa ttcgactaag agttgcaaat caagtgaaaa 2040 ttcagttagc tgataatgac attaatcttg actctgccac tctgctagca cctgacattt 2100 acagaataaa ggaaatgttt agggaaagtt tcccaaataa taaatttata catcctatca 2160 ctaaggaaat gtatgaacat tttgtcaatc caatgatttc aggagaaaag gattatgtca 2220 ccaatctgaa gagcataata gacaaagaga ccagagatga gcagagaaag aatttagaga 2280 gtctgaaagt tgtggatggt aaaaagtata cagagagaaa agcagaaact gctttgaatg 2340 agatgtccca atcagaagag cattatagga gctattttga aaatgacaat tttaggtcta 2400 cactaaaagc tccagtccaa cttcctttaa tcataccaga tgtgtcaagt caagacaatc 2460 aattctcaaa caaagagtta tcggatagga tacggaagaa gccaatcgac cacccaattt 2520 acaacatctg ggatcaagca gttaataaga ggaattgctc gattgcactc ggccatttag 2580 acgagctaga aatatctatg ctagaaggac aggtggccaa gaaagttgag gaatcttaca 2640 aaaaagatag gagtcagtac aacagaacaa ctttgctcac taatatgaag gaagacatct 2700 acttggctga gagagggata aatgccaaaa agaggttaga agaaccagat gtgaaattct 2760 atagagatca atcaaagaga ccttttcatc cttttgtgag tgaaaccaga gatatagagc 2820 agtttactca gaaagagtgc ctagagctca atgaagagtc aggatactgc tcgttaataa 2880 atgtagagga tctagtatta tctgctctag agttgcatga agttggtgat ttagagcact 2940 tgtggaataa cataaaagct cattctaaaa caaaatttgc attatatgct aagttcattt 3000 cagatcttgc cactgagcta gccatttcat tgtcccagaa ctgcaaagaa gacacttatg 3060 ttgtcaaaaa actcagagat tttagctgct acgtactcat taaaccagtg aacttaaaga 3120 gtaatgtgtt cttctcctta tacataccct ctaatattta taagtcacac aacacaactt 3180 tcaaaacact gataggaagt ccagaatcag ggtatatgac tgatttcgtc tcagccaatg 3240 tgagcaagct ggtaaactgg gttagatgtg aagctatgat gctggcacag cgaggcttct 3300 ggcgggaatt ttatgctgta gctcctagta ttgaggaaca agatggaatg acagagccag 3360 attcagtgtg tcagatgatg agctggacac ttattatatt attaaacgac aaacaccagc 3420 tagaagaaat gatcacagtg tctagatttg ttcatatgga aggctttgtt acttttccag 3480 catggcctaa accttataaa atgtttgata aactatcagt aactccgagg tctaggttag 3540 agtgtctagt cataaagagg ctcattatgc taatgaagca ttattcagag aatcccataa 3600 agttcatgat agaagacgaa aagaaaaaat ggtttggatt taaaaatatg ttcttgctag 3660 attgtaatgg taaactttct gacctttctg atcaggatca aatgctcaac ctcttttatt 3720 tagggtacct aaagaacaaa gatgaggagg tcgaagacaa tggcatgggt caactattga 3780 ctaaaatcct gggctttgag agtgccatgc caaagacaag agacttcttg ggtatgaaag 3840 atcctgaata tggtacaata aaaaagcatg agttctccat aagctatgtg aaggatctct 3900 gtgacaaatt cctagacaga ttaaagaaga cacacggaat caaagatcca attacttatt 3960 tgggcgacaa gatagccaaa ttccttagca ctcaattcat tgagacaatg gcatcattga 4020 gagcatcatc aaacttctca gaagattact atttatacac acccagtaga agactaaaaa 4080 accagaagca atctagaagt aaacatgttt ttgacgcagg tggaaatata tctgctagtg 4140 taaaaggaaa gctatatcat agaagtaaag ttattgaaaa gctcacaact ctaataaaag 4200 acgaaacacc aggaaaagaa tcgaaaattg tggtggatct cttacctaag gccatggaag 4260 ctttaaataa aaatgaatgc atgcacattt gtatttttaa gaagaatcag catggtggcc 4320 ttagagaaat atatgttctc aatatctttg aaagaataat gcagaagaca gtagaagatt 4380 tctctagagc cattcttgaa tgctgtccta gtgagaccat gacatcccca aaaaacaagt 4440 ttaggatacc tgaattacac aacatggaag ctagaaagac tctgaaaaat gagtatatga 4500 caatatctac tagtgatgat gcatcgaaat ggaatcaagg tcactacgta tctaagttta 4560 tgtgcatgct attgaggctc actcccactt actatcatgg cttcttagtt caggcgcttc 4620 aactatggca tcataagaag atattcctgg gggaccagct attacaatta tttaatcaga 4680 attctatgct aaataccatg gacactaccc tcatgaaggt ctttcaagct tacaaagggg 4740 aaattcaagt gccttggatg aaggcaggta gatcctacat agagactgag acaggcatga 4800 tgcaagggat tctccactac actagctcac tatttcatgc tatcttcttg gaccaaccgg 4860 ctgaagagtg tagaagagat ataaatagag caattaagac aataaataat aaagaaaatg 4920 aaaaagtgtc gtgtatagtg aataatatgg aaagttctga cgatagtagc ttcattatta 4980 gcattcctaa tttcaaagag aatgaagcag cgcagttata cctgctctgt gtggttaatt 5040 cttggttcag gaagaaagag aagcttggaa cttatcttgg gatttataag tccccaaaaa 5100 gtacaactca aacattattt gtgatggagt tcaactcaga atttttcttt tcaggtgacg 5160 ttcagaggcc cacttttagg tgggtcaatg cagcagtgct aataggagag caagaaactc 5220 tgtcaggtat acaggaagaa ttgtccaata cattgaaaga tgtaatagaa ggtgaaggaa 5280 cgtatgccct cacttttata gttcaagttg ctcaagctat gatccattat agaatgctgg 5340 gtagtagtgc ttcatccgtg tggccggcat atgaaacact cctgaaaaat tcatatgacc 5400 ccgcacttgg cttcttcctg atggataatc ccaaatgtgc tgccttgctg ggatttaact 5460 acaatgtctg gattgcttgt acaacgactc ctttaggaga gaagtatcat gaaatgatac 5520 aagaggaaat gaaggccgag tcacagagtc tgaaatcggt aacagaagat acaattaaca 5580 cggggttagt gtcaagaaca actatggtgg gctttggaaa caagaaaaga tggatgaaac 5640 tcatgactac actgaacctg agtgctgatg tatatgaaaa gatagaagag gaaccaagag 5700 tgtatttctt tcatgcagca acggctgaac agatcataca gaagattgct atcaagatga 5760 aaagtcccgg tgtgatacag tctctgtcta aaggaaatat gctggctagg aaaatagcgt 5820 ctagtgtatt cttcatatct aggcacatag ttttcacaat gtcagcttat tatgatgcag 5880 acccagagac aagaaagaca tcattgctga aagagttaat caatagctcc aaaatacctc 5940 aaagacatga ctatctgcag gaaccgcata cattaaagcc aaccaaagtt gaagttgatg 6000 aagacagctg ggaattcaag tcagcaaaag aggaatgcat tagagtgtta aaacaaagaa 6060 tcaagataca cacagggagg gaggagagat ctattagtct attgtttgaa aatatatcta 6120 agtcaatgat tgggagatgc acagaacaaa atgatgttag agaaaatgtt tcgattctag 6180 catgtgcatt gaaaatgaac tattcaatat tcaagaagga tgctgcaccc aataggtatc 6240 tccttgatga gaagaacatt gtatacccac tgattggaaa agaagtatct gtttatgtta 6300 aatctgacaa agtacatatt gagatatctg agaagaaaga aagactatct accaaattat 6360 ttaatataga taaaatgaag gatatagaag agactctctc actactgttt cctagttatg 6420 gagattacct ttccttgaag gagacaattg atcaagttac tttccaatct gctatacaca 6480 aagtgaacga gagaaggaga gtcagggcag atgtacactt gacagggaca gaaggatttt 6540 ctaagttgcc aatgtataca gcagctgtct gggcctggtt tgatgtgaag actatccctg 6600 cacatgacag catttataga actatctgga aagtctacaa agaacaatac tcatggttgt 6660 cggatacgct gaaagagaca gtggagaagg gaccatttaa aacagtacaa ggcgtggtta 6720 actccatttc gagagctggc gtgagatcga gagtcgtcca tctagtaggg tcatttggta 6780 agaatgtcag gggtagcata aatatggtga cggcaattaa agatcacttt agcaatggac 6840 tagttttcaa agggaatata ttcgacatca aggcaaagaa gactagagaa agtttggata 6900 actacttgtc aatctgcacc actctgtctc aggcacctat tactaagcat gataagaacc 6960 agattttgcg ctctcttttc gtcagtggtc caagaatcca gtatgtgtca tcacagtttg 7020 gatcaagaag aaacaggatg tcgatattac aagaagtcgt gtcagatgat ccaactctac 7080 attggcctga tcaagacaca agtcagaaac agctagaaga caaatttaga gaactggcac 7140 acaaggagct cccatttcta acagagaagg tgttccacga ttatctggaa aagatagagc 7200 agctaatgaa ggagaatact catctaggtg gcagggatgt tgatgctagc aaaaccccat 7260 atgtgcttgc aagagcaaat gatattgaaa tacattgtta tgagttgtgg agagagtatg 7320 atgaggatga agatgaagca taccaggctt attgcagtga agtggaggct gctatggatc 7380 aagagaaact taatgctcta atagagagat accatgtaga tcctaaagca aactggattc 7440 aaatgttaat gaatggcgag attgaaacag ttgaagagtt gaacaagctt gacaaggggt 7500 ttgagagcca cagacttgct ctagtcgaaa gaattagggt ggggaaactt ggaattttag 7560 gcagttacac caagtgtcaa cagagaattg aggagctaga tggtgaaggt aataagactc 7620 ataaatacac aggagaaggt atatggagag gttcattcga tgattccgat gtttgtatag 7680 ttgtccaaga cctgaagaag acaagagaga gttacttaaa atgtgtcgtt ttttccaaag 7740 tgtctgatta taaagtctta atgggccatc tgaagacatg gtgcagggaa caccatatta 7800 gttatgatga gtttcctacc tgtactcaga aagagctttt gagctatggt gttaccaaga 7860 gttcagttct actgtacaag atgaatggaa tgaaaatgtt gaggaacatg gagaagggta 7920 ttcctttata ctggaatcct agcttgtcaa ctagaagcca aacttatatc aactggctag 7980 ctgttgatat cacagatcat agtttaagac tcaggaacag aactatcgag aatgggagag 8040 ttgtgaatca aacaatcatg gttgtacccc tgtataatac tgatgtgcag atattcaaaa 8100 catctccagt ggatcttgag caagatgtgc agaatgatag acttaagctg ttatcagtaa 8160 cgaaagctgg ggagttaaga tggctccaag actggataat gtggagatca tctgctgcat 8220 atgatttaaa tatactaaac caggttagaa ggaacaaagc tgcaagggat cattttaata 8280 ccaagccaca gttcaaaaaa tggatcaagg agctgtggga ctatgcgctt gacaccacac 8340 caatcaataa gaacgtcttc ataaccacac aaggatcaga atcacagagc acagtttcgt 8400 ctggagatag tgaccgtgca gtggcacctc taactgatga ggcagtggat gagattcatg 8460 atctcttaga caaagagtta gaaaagggaa ccttaaaaca gatcattcat gatgcaacca 8520 tagatgccca gcttgatatc cctgctatag agcgcttcct ggctgaagaa atggaggtct 8580 ttaagagtag tttagccaag agccaccctc ttctgctaaa ttatgtcaga tacatgatcc 8640 aggagatagg tgtaaccaac ttcagatcat tgattgaaag cttcaatcag aaagatccgc 8700 tgaaaagtgt atctctaagt atcttagact tgaaagaagt gttcaagttt gtataccaag 8760 atatcaatga tgcttatttt gttaaacagg aagaagacca taagttcgat ttctgagaag 8820 tcttctccaa caaaagaact gcagcaccaa cacaagtcca gacaccattg agatccgtac 8880 aaatatttca cgttttatcc cttatgactt agattttcaa taattaatta tataaacaaa 8940 aacattttgt tttcctctgg actttgtgt 8969 //