ID AY179509; SV 1; linear; genomic RNA; STD; VRL; 6610 BP. XX AC AY179509; XX DT 03-MAR-2003 (Rel. 75, Created) DT 16-APR-2005 (Rel. 83, Last updated, Version 3) XX DE Mink astrovirus, complete genome. XX KW . XX OS Mamastrovirus 10 OC Viruses; Riboviria; Astroviridae; Mamastrovirus. XX RN [1] RP 1-6610 RX DOI; 10.1099/vir.0.19267-0. RX PUBMED; 14573813. RA Mittelholzer C., Hedlund K.-O., Englund L., Dietz H.-H., Svensson L.; RT "Molecular characterization of a novel astrovirus associated with disease RT in mink"; RL J. Gen. Virol. 84(Pt 11):3087-3094(2003). XX RN [2] RP 1-6610 RA Mittelholzer C.; RT ; RL Submitted (14-NOV-2002) to the INSDC. RL Virology, Swedish Institute for Infectious Disease Control, Solna 171 82, RL Sweden XX DR MD5; c4c61e038b56bd9cc70ee9d9d5f92e80. DR EuropePMC; PMC1828050; 17343744. DR EuropePMC; PMC262547; 14605160. DR EuropePMC; PMC3008476; 20926705. DR EuropePMC; PMC3446559; 22787221. DR EuropePMC; PMC3502403; 22998755. DR EuropePMC; PMC3810933; 23965613. DR EuropePMC; PMC3871642; 24376619. DR EuropePMC; PMC4047031; 24775733. DR EuropePMC; PMC4102142; 20507741. DR RFAM; RF00164; s2m. XX FH Key Location/Qualifiers FH FT source 1..6610 FT /organism="Mamastrovirus 10" FT /mol_type="genomic RNA" FT /db_xref="taxon:1239574" FT gene 27..2651 FT /gene="ORF1a" FT CDS 27..2651 FT /codon_start=1 FT /gene="ORF1a" FT /product="putative serine protase" FT /note="nonstructural protein" FT /db_xref="GOA:Q80KJ8" FT /db_xref="InterPro:IPR009003" FT /db_xref="UniProtKB/Swiss-Prot:Q80KJ8" FT /protein_id="AAO32081.1" FT /translation="MANNTTSALHPRGSGQRCVYDTVLRFGDPDARRRGFQLDEVSHNK FT LCDIFDSGPLHFAFGDLKVMKVAGGVVTPHKTVVKTVYVSGVQEGNDYVTFAFTPGPNE FT WREVDPRIDKRTALVGVLVQEHKKLDSDLKESRRELSQLKLEHSLLRHDYERLVREKPG FT PAMRTFKFSAVIFYAFFLGFLLMSAVKGEVYGRCLDSELNLNGNPEVCLHWEEVKSFSL FT QVALADFWNMTLDYYATVAPQSPLMDLALGYFPYFANWHMAAFLVGTAHVVAAERPLYM FT LVTLVLATLSRFQLVALAAVPMLDMPSSIGLWVTMVLFAIDQAFAILASVLISVLLLIL FT CLAMNDVDYGALLRGCVTLVSATVFSHLVSFLHAPGWFTIIAILIYRIPKVLSYVSAER FT VDIKGPDGKIKETQNANPSWITKMSGLKNFFQRAFRQKVRTGVNPTTRIIPNSLVVIDA FT KDGRGTGFRVRNYLVTAGHVVGADTTVRVRWADVTSFAHVVYRVPNKDIVLLTLPAEYN FT SLHSYKLAKEVVDGTVVVVSNGDGGALSVGISEGVIVGESMTYAINTADGMSGSPLTTT FT DGRLIGVHQQNTGFTGGAVIFRDTDFPQPKKPQREADLEAKVAELEKALAAYTQSATGE FT DIVGLVRVAIQREMEVLRKELSNEFGQAKGKTKHKRRIMAAARSGGKRKPGKVWTEEEY FT KKLLEEGFTRDQLREMAEAAREADDDFDDYEEEKNEVDYPVWSDHDSDEEIDRDWFGQN FT LPTWSSAWSDFEPELDPDVTKTLPCHLEDKFSLKHYIITEADLKHFGQEMKEYMDHLDA FT VIKTHTEKGKWCPNTNTEEILKDLNAMWFKLNHTMWKNGVAPFMQRKKQKPKNGKRAPK FT GAQ" FT gene <2615..4171 FT /gene="ORF1b" FT CDS <2615..4171 FT /codon_start=1 FT /gene="ORF1b" FT /product="putative RNA-dependent RNA polymerase" FT /note="nonstructural protein" FT /db_xref="GOA:Q80KJ7" FT /db_xref="InterPro:IPR001205" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR009003" FT /db_xref="UniProtKB/Swiss-Prot:Q80KJ7" FT /protein_id="AAO32082.1" FT /translation="KKREEGPERGPINPDEMRLDHWEKMMAPPDAGRRLVPDDYPVIGK FT LPINRPISDWDEPVDDLLNLLPPAPDSSAYGPAVWGPEAYVKSFEKFTYAKPRDSIKRD FT FPREWKFACQVLRREFDFLEGSVIMDITATSKNADSTCAYPKCNYWKTEAEYLSERGYQ FT DYVSEYKRIHGGARPKVLWLLFLKKEILKVKKINDSDIRQIVCADPIFARIGNAFEEHQ FT NTLMKHRTATRMPQCGWTPFFNGFKRRIERLLSRKNSVFIEFDWTRYDGTIPREIFAKI FT KSFRFSCLAEEFQTDANRAMYQWYCDSLLDRYVLMPSGEVTRQTKGNPSGQISTTMDNN FT LCNVFFQAFEYAYIHPEKSIEELRESWDRCDSLIYGDDRLTTFDHVPPDYVDRVVHMYK FT DVFGMWVKPEKVIVSDTPVGLSFCGFTVGPDLMPVPTDCDKLVASLVTPTKKLQDIVAL FT YSKVLCYRILGHNLSDEHEFKRYVRVALEVLARHIRNLGGEEPVHVTERLLDKLWRGGP FT K" FT misc_feature 2615..2620 FT /gene="ORF1b" FT /note="ribosomal slippage site" FT gene 4175..6502 FT /gene="ORF2" FT CDS 4175..6502 FT /codon_start=1 FT /gene="ORF2" FT /product="capsid protein precursor" FT /db_xref="GOA:Q80KJ6" FT /db_xref="InterPro:IPR004337" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/Swiss-Prot:Q80KJ6" FT /protein_id="AAO32083.1" FT /translation="MASANQAAKAEAKKVIEKVAKEVIKETKNSAQRNQGPGKRWNSKK FT GRHMPKNNNNKGMKRTVDNEVKQKLKKEGLEGPRSRFSVRVSATIGKIGPNKEQGPELQ FT IATFLHPSLMKEPNDGTNFGPLQAAAAQWGLWRLSSLEVKCTPLVGSSAVTGSIYRMSL FT NLTQSPGNASWGGLGARKHKDIPAGKSVSWKLQRGDLAGPRQTWWMTDTNEEGGQSCGP FT MLEIHGLGKTSSTYQSQDWTGDLFIVEVLGRWEFTNYNAKPALGTLDRKSEDYASDATG FT PGIMVGDDGVMKMTLPTASSLARFMSDASERSPVNEGSVGETIWHIVDEGAGLASSVAP FT TPFSWLIKGAWWFVKKLAGRSGANADEQYVVYASLADAQNNKPVMANRFDHTKKATTLT FT VTQVNSPNTGPGVTQAAYHTENPFPLVPATQPPPPRSIVVVNATARPFGYVKYNTGDSN FT VKSHGKFDGTQYHFTLKRGSTVSYASAAYILTDVSMLTYEGNRVTGCYDPGWMEPTGIT FT VHYRNESSAFGRVLAYEIDQWGSTSDNHFTIGVWLVQTIKDLPAHDTTVWPYIPLPYVS FT AGNCTAPPVQVALDKACVPYLTKVGVTSHQQCTVRQPQVRSGTFMLVYSIGTNTPATTA FT GFTTGQPLGEATNASALPEGKISTSGFWERALSAVAPYQDFISVKFTLPQGPHADPRVD FT ALLDLIQQRFNLKPVDASESEDEDEDSPSGSEEEPCGEEPTPPQPTPRLKLAKEMMYEA FT LRDSDWTHVDAEALLAAISSKN" XX SQ Sequence 6610 BP; 1628 A; 1628 C; 1739 G; 1615 T; 0 other; ccgaagtagg tgtgtgtgtt gccgttatgg ctaacaacac taccagcgct cttcaccctc 60 gtggctctgg ccagcgctgt gtctatgaca cagtgctccg gtttggggac cccgatgcac 120 gtcgcagggg tttccaattg gacgaggtgt cacataataa gttgtgtgac atttttgaca 180 gcggcccgct ccacttcgct tttggtgatc ttaaagtgat gaaggtggcg ggtggtgtgg 240 tcacaccgca taaaacagtt gtcaaaacag tctatgtctc aggtgttcaa gagggtaacg 300 attatgtcac ttttgccttc acgcctggac ctaacgagtg gcgcgaagtt gatccccgca 360 tcgacaagcg cacagcactc gtcggtgtcc ttgtgcaaga acataaaaaa ttggactcag 420 accttaagga gtcgcgccgt gagttgtccc agctcaagtt ggagcactca ctgttgagac 480 atgactatga gcgcttggtc cgtgaaaagc ctggtcctgc tatgagaact tttaaattct 540 cagctgtcat cttttatgcg tttttccttg gtttcctgct tatgtctgct gtcaagggtg 600 aggtgtatgg tcgctgtctt gacagcgagc ttaacctcaa tggcaaccct gaagtgtgtt 660 tgcattggga agaggttaaa tcttttagcc tccaggttgc ccttgcagac ttctggaaca 720 tgaccttgga ctattacgct actgtggcac cacaatcgcc acttatggac cttgcactgg 780 gctacttccc ctactttgct aactggcaca tggcggcttt ccttgttggc actgcacacg 840 ttgtggcggc cgaacggccg ctctatatgc tagtgacact tgttttagca acattgtcaa 900 ggttccaact ggtagcactt gccgccgtcc caatgttgga catgccgtcc tcaattggtt 960 tgtgggttac aatggtcttg tttgccattg atcaggcctt tgccatttta gcttcagtgc 1020 taatctcggt acttttactc attctgtgtc ttgctatgaa tgatgttgat tatggcgcgc 1080 tcctacgcgg ctgtgttact ctggttagcg ccactgtctt ttcacatctt gtgagtttct 1140 tgcacgcgcc aggctggttt acgataattg ccatcctcat ctatcgtata cctaaagtcc 1200 tttcatatgt cagtgccgag cgtgttgaca ttaagggccc tgatggtaag attaaagaga 1260 cacagaatgc caacccatct tggatcacca agatgagtgg cctgaagaac ttcttccagc 1320 gtgctttccg acagaaggta cgtacggggg taaacccgac aacccgtatc attcccaact 1380 cgttggtggt gattgatgct aaggatggta ggggcactgg cttccgggtg agaaactacc 1440 ttgtcactgc tggccacgtt gttggcgcgg acactactgt ccgtgtccgc tgggctgatg 1500 tcacatcctt cgcccacgtg gtctatcgtg tcccgaataa agatattgtg ttgctgactt 1560 tacccgctga atataacagt ttacactcct acaagcttgc aaaagaggtt gttgatggca 1620 cggttgtggt tgtctccaat ggtgatgggg gcgccctttc ggttgggatc tctgaaggtg 1680 tcattgtagg tgagagtatg acctacgcga taaacacggc cgatggtatg agtggttcac 1740 cactcaccac cacggatggc cgcctaattg gcgtccacca acaaaacacc gggtttaccg 1800 gcggggccgt gattttccgt gatactgatt tcccgcaacc gaagaagcca cagcgtgagg 1860 cagacttgga ggctaaggtg gctgaacttg aaaaagctct ggcagcctat acccagtccg 1920 ccaccggcga ggatatcgtc ggcttggttc gagttgccat acagcgggag atggaagtcc 1980 tcaggaaaga actcagcaat gagtttggcc aggctaaggg taagaccaaa cataagcgcc 2040 gcatcatggc tgccgcccgc tcgggtggca agcgtaagcc gggcaaggtc tggaccgagg 2100 aagagtacaa gaaactcctc gaggaagggt tcacccgtga tcagctcagg gaaatggcag 2160 aagcagctag ggaagctgac gacgactttg atgactatga ggaagagaag aatgaggttg 2220 actaccctgt gtggtctgac catgattctg acgaggagat tgatcgtgac tggttcggac 2280 agaaccttcc cacgtggagc tccgcatggt ctgattttga gccagagttg gatcctgatg 2340 tcaccaagac gctgccctgc catcttgaag ataagttttc cctcaaacat tatattatca 2400 cagaggctga cttaaagcac tttggtcagg agatgaagga gtacatggat caccttgatg 2460 ctgtcatcaa aacccacacg gaaaaaggta agtggtgccc aaacaccaac actgaggaaa 2520 tccttaagga cctcaatgct atgtggttta aactcaacca caccatgtgg aagaatgggg 2580 tggctccttt catgcagagg aagaagcaga agccaaaaaa cgggaagagg gccccgaaag 2640 gggcccaata aaccctgacg agatgcggct tgaccactgg gagaaaatga tggccccgcc 2700 tgacgctggt cgcaggctgg tgcctgacga ctatccagtg atcggcaaat tgcccataaa 2760 taggcccatc tccgactggg acgagccagt cgatgacttg ctgaaccttt tgcccccagc 2820 acctgattcg tcagcctatg gccctgcggt ctggggccca gaagcatatg tcaagtcctt 2880 tgagaagttc acttacgcga aaccgcgaga ctcgattaag cgtgatttcc cacgtgagtg 2940 gaagttcgct tgtcaagtcc tacggcgtga gtttgatttc ctcgagggct cagttatcat 3000 ggacatcact gcaacatcta agaatgcaga ttccacttgt gcatacccta agtgtaatta 3060 ttggaagact gaagcggaat acctgtctga aagaggctat caggattatg tgagtgagta 3120 caagcgtatt cacggcgggg ctcgccccaa ggtcctatgg ctcttattcc ttaagaagga 3180 gatcttgaag gtaaaaaaaa ttaatgattc agacatccgc cagattgtct gtgctgaccc 3240 aatctttgcc agaattggca atgcgttcga agaacatcag aacactctca tgaaacaccg 3300 caccgcgaca cgcatgccac agtgtggatg gacaccattt tttaatgggt ttaagcgtag 3360 gattgaacgc cttttgtcgc gtaagaatag tgtattcatt gagtttgact ggacacgcta 3420 cgatgggacc atcccacgtg agatctttgc gaaaataaag tcttttcgct tctcgtgtct 3480 agcggaggag tttcagacag atgcaaacag ggcaatgtat cagtggtact gtgacagcct 3540 gcttgacaga tatgtcttaa tgcccagtgg tgaggtcacc cgtcagacca agggcaaccc 3600 atcaggtcaa atttcaacaa ccatggacaa caatttgtgc aacgtgttct tccaggcatt 3660 tgagtatgcc tatatccatc cagagaagag cattgaagag ctacgggagt cgtgggacag 3720 gtgtgactcg ctaatttatg gtgatgaccg cttgacaaca ttcgaccacg ttcccccgga 3780 ctatgtggac cgtgttgtcc atatgtataa ggatgttttt ggcatgtggg ttaaacctga 3840 aaaggttatc gtgtccgaca caccagtcgg gctttccttc tgtggtttca cagttggacc 3900 agatctaatg ccagttccaa cagactgcga taagttagtt gcatccttag tgacacccac 3960 caagaagctt caggatatcg ttgcactcta ctctaaagtc ctgtgttaca gaattcttgg 4020 gcacaatttg tcagatgagc atgagtttaa gcgatacgtt cgtgtcgcgc ttgaggtctt 4080 agctaggcac atccgcaact tgggcggcga ggagcccgtc catgtcacgg agcgactgct 4140 tgataaactt tggaggggag gaccaaagtg agctatggcg tccgccaatc aggctgccaa 4200 ggctgaggcc aagaaggtta ttgaaaaagt ggccaaagag gttatcaagg aaacaaaaaa 4260 ctctgcgcag cgcaaccaag gcccggggaa gcgctggaac agcaagaagg gccgccatat 4320 gcccaagaac aacaacaaca aggggatgaa acggactgtg gataatgagg tcaaacagaa 4380 actcaaaaag gagggattag agggtccacg ttcacgtttt tctgtccgtg tctctgctac 4440 cattggtaag attggcccaa ataaagaaca aggcccagag ttgcagattg ccacctttct 4500 gcatccatcc ctgatgaaag agccaaatga tggtaccaat tttggcccgc ttcaagcagc 4560 cgcagcccag tggggcttgt ggcgcttgtc gagccttgag gtcaaatgca ctcccttagt 4620 tgggtcgagt gctgttactg gttccatcta caggatgtca ttgaatttga cacaatcccc 4680 aggaaatgct tcttggggag gccttggtgc ccggaaacac aaggacattc cagcgggcaa 4740 gtccgtttcc tggaagctcc aacggggcga cctagctgga ccaaggcaga cttggtggat 4800 gaccgacacc aatgaagagg gcgggcagtc ttgcggtccg atgctcgaga tccatggtct 4860 cggtaagacg tcgtcgacct accaaagtca agactggact ggcgatcttt tcatcgttga 4920 agtccttgga cgttgggagt tcactaacta caatgctaaa ccggcacttg gcacactcga 4980 ccgcaagtca gaggactatg cctctgacgc aaccgggcct ggcattatgg tgggcgacga 5040 cggtgtcatg aaaatgacgc tgccgacagc ttcatcgctt gctaggttca tgtctgatgc 5100 atcagagcgg tcgccggtga atgagggttc ggtcggtgaa actatatggc atatagttga 5160 tgaaggcgct ggacttgcgt ccagcgtcgc gccgacccca ttctcgtggc taattaaggg 5220 tgcttggtgg tttgtgaaaa aactcgcagg ccgaagtggg gccaatgctg atgagcagta 5280 tgtggtgtat gcatcactgg ctgatgcgca gaacaacaaa ccggtcatgg ccaatcgctt 5340 tgaccacact aagaaggcca ccacccttac ggtcacgcag gtgaactccc ccaatactgg 5400 cccgggtgtc acccaagctg cataccacac agagaatcct tttccgcttg tgccggctac 5460 tcagcccccc ccaccccgca gcattgtcgt tgtgaatgca accgcacgac cctttggcta 5520 tgtcaaatac aacactggcg attccaatgt taagtcccat ggcaagtttg atggcaccca 5580 atatcatttc acccttaagc gtggtagcac ggtgagctac gcgtctgctg cttacatact 5640 gacagatgtt agcatgttga cctatgaagg aaatagggtg acggggtgct atgaccctgg 5700 ctggatggag cctacaggca ttaccgtcca ctatcgcaat gagtcatctg cgttcggccg 5760 ggtccttgcc tatgaaattg accagtgggg tagtacaagt gacaaccact ttacaattgg 5820 ggtgtggttg gtccagacta taaaagacct gcctgcacat gacaccacag tatggcccta 5880 cataccactc ccttatgtct cagcagggaa ttgcacagca cccccagtgc aggttgccct 5940 agataaagcc tgtgtcccct accttactaa ggttggggtg acatctcatc aacaatgtac 6000 agttcgtcaa ccacaggttc gtagtggcac ctttatgctg gtctattcga ttggcactaa 6060 cacacctgca acgacggctg gctttacaac aggccagcca cttggcgaag caactaacgc 6120 atctgcgctg cctgagggga aaatttcaac atctggtttt tgggagcggg ccctttctgc 6180 tgttgcaccc tatcaagatt ttatttcagt taagttcact ctcccgcagg ggccacacgc 6240 tgaccctagg gtggacgcat tgctggattt aatccagcag aggttcaacc tcaagcccgt 6300 cgacgcctca gaatcagagg atgaagacga agactctccc agtgggagtg aagaggaacc 6360 ctgcggagaa gagcccacac ctcctcagcc tacacctagg ctaaaacttg ccaaggagat 6420 gatgtatgag gctctccgtg attccgactg gactcacgtt gatgcagagg cgctgcttgc 6480 ggcaatttcc tcaaagaact gaacactacc cgaggccacg ccgagttagg atcgagggta 6540 caggtagtga gtaagttcag atgattttta gacttgttaa gctaatcatc atttaaaatt 6600 aataattggc 6610 //