ID AY177608; SV 2; linear; genomic RNA; STD; VRL; 4035 BP. XX AC AY177608; XX DT 27-JAN-2003 (Rel. 74, Created) DT 21-MAR-2013 (Rel. 116, Last updated, Version 3) XX DE Turnip rosette virus, complete genome. XX KW . XX OS Turnip rosette virus OC Viruses; Riboviria; Solemoviridae; Sobemovirus. XX RN [1] RP 1-4035 RA Callaway A.S., Lommel S.A.; RT "Turnip rosette virus: a Sobemovirus infecting Arabidopsis thaliana"; RL Unpublished. XX RN [2] RP 1-4035 RA Callaway A.S., Thornesbury J., Lommel S.A.; RT ; RL Submitted (10-NOV-2002) to the INSDC. RL Botany, North Carolina State University, Box 7612, Raleigh, NC 27695, USA XX RN [3] RC Sequence update by submitter RP 1-4035 RA Callaway A.S., Thornesbury J., Lommel S.A.; RT ; RL Submitted (20-MAR-2013) to the INSDC. RL Botany, North Carolina State University, Box 7612, Raleigh, NC 27695, USA XX DR MD5; 059e02d692998b3f7c2bc717a8542f46. DR EuropePMC; PMC3791421; 23830075. XX CC On Mar 20, 2013 this sequence version replaced gi:27902390. XX FH Key Location/Qualifiers FH FT source 1..4035 FT /organism="Turnip rosette virus" FT /mol_type="genomic RNA" FT /note="TRoV" FT /db_xref="taxon:218923" FT 5'UTR 1..67 FT CDS 68..505 FT /codon_start=1 FT /product="unknown" FT /note="ORF1; possible roles in suppression of FT post-transcriptional gene silencing and viral movement" FT /db_xref="UniProtKB/TrEMBL:Q80QX8" FT /protein_id="AAO24317.1" FT /translation="MSRVATIEIYNENGIIVARKKTSGPHALLELFNGKQKYDQVSELF FT VIWVCEECGKTVYSTCEFKGIVFVREDGKETTEFETEAVVDSDDCGCAYEYHSKTESEA FT CLCPGYAIEGICDCDWYEDRPETSDSSELFTQWERLELFSD" FT CDS 559..2175 FT /codon_start=1 FT /product="polyprotein" FT /note="ORF2a" FT /db_xref="GOA:Q80QX7" FT /db_xref="InterPro:IPR000382" FT /db_xref="InterPro:IPR009003" FT /db_xref="InterPro:IPR018019" FT /db_xref="UniProtKB/TrEMBL:Q80QX7" FT /protein_id="AAO24318.2" FT /translation="MLSLRSIVKLIVAALNVMFVVTIGVCARVLAPERPVNWNFVALLL FT TPVLALIAFELLTELRKWMVYTVKEEDLPAPLSLDSTPRFDPIHGITSTVTVDGKVYQV FT VIQPEYWHLVSPNRSQDGNKETVCIDRMSTVTPAGKEPPSLVTLKVGDRVVGMGSRVSW FT GGNTYLLTAAHVCALHKDIYIYKNAIGTPLGAGWTRRYGATHKTADFTLIEVPPTVWAK FT LGVKAASLQPLNKLSVVTVYSANSSTVITSSSSRAVTQEFRHVIIHSCNTTAGTSGSPL FT YSGDNVVGVHLGTEVTMHSNRACNVGLVLGAFHESIISQGTLSEISADEAADRDYDFVD FT FSVEGLGRLSMGKGEFYLRDDRGITIEEIRKKGRKIWTEDFDEESDDGIFETLPVSSLN FT CQRASDEIVCSPSSSLEITNGNKATSQKTESASKKLGSPGLLSRNQRRKERKRLQKLSQ FT EKSPKSQTTPGPKEDQRPKGSPSTSKRVGSEEPKSQMESERLLRDLSKSIQQLTVLLNS FT REGGITKTSSSTSQTWRARQT" FT misc_feature 1750..1756 FT /note="shifty heptanucleotide for -1 ribosomal FT frameshifting" FT CDS 1782..3347 FT /codon_start=1 FT /product="RNA-dependent RNA polymerase" FT /note="ORF 2b; produced by -1 frame shift in ORF 2a FT polyprotein; similar to ORF3" FT /db_xref="GOA:Q80QX5" FT /db_xref="InterPro:IPR001795" FT /db_xref="InterPro:IPR007094" FT /db_xref="UniProtKB/TrEMBL:Q80QX5" FT /protein_id="AAO24320.1" FT /translation="MLALLEFGNYQWKQGHVTEDGIGLKEVGKSGVTFSEPKKKGTKAI FT TEAFSREIPEVANYAWPQRGSKAERKSLYLQASRFRRTEEPNGIGEVVERLVKEYPTTN FT CPPEFKGRWDYQDIFEYVTDVARSSDINGKASPGVPLSSIAAKNEVLVTRHLDFLVHAV FT VQRLFHLSDEILPEKPSPEWLVSQGYCDPVRVFVKQEPHPLRKLDEGRVRLISSVSLVD FT QLVERVLFGRQNRKEITQWKSIPSKPGMGLSLTEQMKSVFEQVSKLAASREAAEADISG FT FDWSVQEWELEMDLEVRLRLGNFPPKLELAARNRFKCFMNSVFQLSNGELISQVSPGLM FT KSGSYCTSSTNSRIRVAMAYLIGSPWCIAMGDDSVEGYVTNAREKYESLGHICKDYLVC FT QKKKGELDGFNFCSHWISRSHSYLDSVGKTLYRFLESSNEELEILEAELGTHPRWREIV FT SKLELVGRIRAKHNGERKQEAHKEPEAENPQEEFPIWEDEFSGYTLMGPSFDWDRNAGW FT STVN" FT CDS 3196..3963 FT /codon_start=1 FT /product="coat protein" FT /note="CP; capsid protein" FT /db_xref="GOA:Q80QX4" FT /db_xref="InterPro:IPR000937" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:Q80QX4" FT /protein_id="AAO24321.1" FT /translation="MEKGNKKLTKNQRRKTRKKSSQSGRTNSVVTPLWAPVSTGTVMQG FT GALSISSLNNKGDIRVCGREVVTEISVSNTPTPSVLQVIPETFPSRLKGLATSWSKFKW FT QAIKFVYMSICPTTERGSVHFGFLYDTVDNLPGTVGEISTLQGYTTGSVWAGTSGNELL FT EDGVYAKTPKDAVVARMDARRADKKYYPIVSTTQLTKSLNVDASLGNTYVPARLAILTA FT DGTTAADKPQIVGRVYAVFCVDLIDTIASSLNV" FT 3'UTR 3964..4035 XX SQ Sequence 4035 BP; 1141 A; 902 C; 1036 G; 956 T; 0 other; caaaataaat acaagaaaga aagattttct cccacagctt gtattatctc tacgacatta 60 atgattaatg agtagagttg ccacaatcga aatatacaac gagaacggaa taatcgtagc 120 tcggaagaag acgtcgggac cgcacgcgct cctagaactc ttcaacggaa agcagaaata 180 cgatcaggtg tccgaactct ttgtaatttg ggtttgtgaa gagtgtggga aaaccgtgta 240 ctctacgtgc gaatttaaag gaatcgtatt tgttagagag gacgggaaag agacaactga 300 attcgaaaca gaagcagttg tagactccga cgattgtggg tgtgcttacg agtatcattc 360 caagaccgag agtgaagctt gcctttgccc cggatacgcg atagaaggaa tctgcgattg 420 cgattggtac gaagacagac ccgaaaccag cgacagctct gagcttttca cccagtggga 480 aaggctcgaa ctcttttctg actaaaatcc acaagacatt tactttctta gtaataggtc 540 agtctaaact gtggaatcat gttgtcatta aggagtatag tgaagctgat cgtagctgcg 600 ttgaacgtaa tgtttgtcgt gacgatagga gtgtgtgctc gagtgttagc cccagagagg 660 ccagtgaact ggaactttgt ggcgctactg ctgaccccag tgctagcatt gatagcattc 720 gagctgctta ccgagctaag aaaatggatg gtgtacaccg taaaggaaga agaccttcca 780 gcacctctta gcttggattc aactccgagg ttcgacccca ttcacggaat aacgtcaaca 840 gtcaccgtgg acggcaaggt ttaccaggtc gtaatacaac ctgaatactg gcacctagtt 900 tccccgaatc gatctcagga tggaaacaag gaaaccgtat gtatagaccg catgtccact 960 gtcaccccgg caggaaagga accaccatct ctcgtgaccc tcaaagtggg agatagagtt 1020 gtgggtatgg gttcccgagt ctcatgggga ggcaatacgt acctgttgac tgcagcccac 1080 gtttgtgccc tacacaagga catctacatc tataagaatg ccataggcac tccactaggt 1140 gctggatgga ctaggcggta tggagctact cacaagacag cagactttac tcttatcgaa 1200 gtcccaccga cggtgtgggc taagcttgga gttaaggctg cgagtctaca accgttgaac 1260 aaacttagcg tagtcactgt ttattcggca aatagctcca cggtaataac ttctagcagc 1320 tctcgggctg ttacacaaga attccgccat gtgataatcc actcgtgcaa tacaacggcc 1380 ggaaccagcg gttctccact ttacagtggg gataatgtgg taggagtcca tttgggaact 1440 gaggttacca tgcactccaa cagagcttgt aatgtcgggt tggtcttagg ggctttccac 1500 gaatctataa tctcccaagg aactcttagt gagatctcag ctgatgaggc tgcggataga 1560 gattatgatt ttgtggattt cagcgtggaa ggattaggga ggttgtcaat gggaaaaggc 1620 gaattttatt tgcgagatga ccgaggaatt acaattgaag agatccggaa gaaaggaagg 1680 aaaatatgga cagaagactt tgatgaggag tctgatgacg gaattttcga aactctacca 1740 gtgagctctt taaactgcca gcgggcgagc gacgagattg tctgctcgcc ctcctcgagt 1800 ttggaaatta ccaatggaaa caaggccacg tcacagaaga cggaatcggc ctcaaagaag 1860 ttgggaagtc cggggttact ttctcggaac caaagaagaa aggaacgaaa gcgattacag 1920 aagctttctc aagagaaatc cccgaagtcg caaactacgc ctggccccaa agaggatcaa 1980 aggccgaaag gaagtccctc tacctccaag cgagtaggtt ccgaagaacc gaagagccaa 2040 atggaatcgg agaggttgtt gagagacttg tcaaagagta tccaacaact aactgtcctc 2100 ctgaattcaa gggaaggtgg gattaccaag acatcttcga gtacgtcaca gacgtggcgc 2160 gctcgtcaga cataaacggc aaggcgtccc ccggtgtgcc gctctcctca atagcggcca 2220 agaatgaggt gttagtgacc agacatctcg attttcttgt tcatgctgtg gtccaaagat 2280 tgttccatct ttccgatgag attctcccag aaaagccctc gccagagtgg ttggtgtccc 2340 aaggttattg tgatccagtg agagtctttg ttaaacaaga accccacccg ttgaggaagc 2400 ttgatgaagg cagagtgaga ttaatcagct cggtgtctct agtagaccag ttagttgaaa 2460 gggtcttgtt cggccgccaa aaccggaaag aaatcacaca atggaagagt atcccgtcga 2520 aacccggaat gggcctgtcg ctgactgaac aaatgaagtc agtgtttgaa caggtgagta 2580 aattagcagc tagccgtgag gcagctgaag ctgatatttc cggtttcgat tggtctgtgc 2640 aagagtggga attggaaatg gacttggagg ttcgcctccg gttaggaaac tttcccccta 2700 agttggagtt agccgctcga aatagattta aatgtttcat gaactcggtt ttccagctta 2760 gtaacggtga actgatctct caggttagtc ctggcctgat gaaatctgga tcctattgca 2820 catcttctac caactcaaga atcagggtag caatggcgta tttaataggc tccccgtggt 2880 gtattgccat gggtgatgac tctgtcgaag gttacgttac caacgccaga gagaagtatg 2940 aatccctcgg acacatctgt aaggattacc tggtttgcca aaagaagaaa ggcgagctag 3000 atgggttcaa cttctgctcc cattggatat cccgttcaca ttcttacctt gactcagtag 3060 gcaagacact ctacagattt ctggaatcat ctaatgaaga actagagata cttgaggctg 3120 agttagggac ccaccccaga tggagggaaa ttgtttccaa actagagctc gttggaagaa 3180 tccgagcaaa acataatgga gaaaggaaac aagaagctca caaagaacca gaggcggaaa 3240 acccgcaaga agagttccca atctgggagg acgaattcag tggttacacc cttatgggcc 3300 ccagtttcga ctgggaccgt aatgcagggt ggagcactgt caattagttc gctgaataac 3360 aaaggtgaca tacgagtgtg tggaagggaa gtagtcaccg aaatctcagt ttcgaacacg 3420 ccaactcctt ccgtgttgca agtcatacca gaaacctttc cttctaggtt aaagggtctg 3480 gctaccagtt ggtcgaagtt caagtggcag gctattaaat tcgtttacat gtctatctgc 3540 cccacaactg agagaggatc tgttcacttc ggatttcttt acgacaccgt ggataacctc 3600 ccgggaactg tcggcgagat atccacttta caaggttaca ctactggatc tgtctgggcc 3660 ggaacctcgg gaaacgagct actcgaagat ggtgtttacg ccaaaacccc gaaggatgcc 3720 gtcgtagcca gaatggacgc taggagagct gataagaaat attatccgat cgtgagtacc 3780 actcaattga ctaagtctct aaacgttgac gcttcgctgg gaaacacgta cgtgccggct 3840 cgcctggcga tactgaccgc tgatggaaca acggcagcag acaagcccca aatcgtaggg 3900 cgtgtctacg ccgtgttctg cgttgacctg attgacacga tcgcctcgtc cttaaacgta 3960 tagaatggcc cactttacgg gcactcttcc ctcactaccc aggtgaggga tgtagaattc 4020 atttgggaac cccac 4035 //