ID AY172454; SV 1; linear; genomic RNA; STD; VRL; 2632 BP. XX AC AY172454; XX DT 19-JAN-2003 (Rel. 74, Created) DT 19-JAN-2003 (Rel. 74, Last updated, Version 1) XX DE Sclerotinia homoeocarpa mitovirus RdRp-like protein gene, complete cds. XX KW . XX OS Sclerotinia homoeocarpa mitovirus OC Viruses; Riboviria; Narnaviridae; Mitovirus; unclassified Mitovirus. XX RN [1] RP 1-2632 RA Deng F., Xu R., Boland G.J.; RT "Hypovirulence-associated dsRNA in Sclerotinia homoeocarpa is conspecific RT with Ophiostoma novo-ulmi mitovirus 3a-Ld"; RL Unpublished. XX RN [2] RP 1-2632 RA Deng F., Xu R., Boland G.J.; RT ; RL Submitted (04-NOV-2002) to the INSDC. RL Environmental Biology, University of Guelph, Guelph, ON N1G 2W1, Canada XX DR MD5; bb927249cc3b71dfb376a055e6d1e81c. XX FH Key Location/Qualifiers FH FT source 1..2632 FT /organism="Sclerotinia homoeocarpa mitovirus" FT /host="Sclerotinia homoeocarpa (isolate Sh12B)" FT /mol_type="genomic RNA" FT /db_xref="taxon:217362" FT CDS 272..2434 FT /codon_start=1 FT /transl_table=4 FT /product="RdRp-like protein" FT /note="RNA-dependent RNA polymerase" FT /db_xref="InterPro:IPR008686" FT /db_xref="UniProtKB/TrEMBL:Q80R01" FT /protein_id="AAO21337.1" FT /translation="MMKRLTLLQNKSNQLTNNDLSNVGYITMKLFPHWIRLLVWSLQLS FT PAPYKKFGSRIAVLWKANGVSFTVQYLKECTRIVQHFVSGHPVFVTDVMPIGLAGGLPT FT IIPGTLRTLLRSKDPSTIRGVLSTLAVYRIMKMPCKLKLESITDPFKGISDTLPKHEVI FT NGLAALGLETPKGKSKHRLTLTNPIIYLLSAGPNHSISMMGIWKDIYAWYISPLFPTLL FT SFIGRMNRGNVLIDLLRSEVSHWEATGVKPSVSPLELKLGKLAIKEEAAGKARVFAMAD FT SITQSVMAPLNSWVFSKLKGLPMDGTFNQQAPLNRLVQLYKEGLLHDVEFYSYDLSSAT FT DRLPMAFQKQIISVLFGSDFADDWATLLVGRDWYLKDIPYRYSVGQPMGALSSWAMLAL FT SHHVIVQIAAMRVGKLSFTNYALLGDDIVIADKAVATSYHMIMTQILGVEINLSKSLVS FT SNSFELAKRLVTMDGEVSAVGAKNLLVALKSRWGISSVILDLYNKGLALSEQDLRQRFS FT SIPTVSKQFGVDKLLWLVLGPFGFIPSKDGLSAFMKLNRSLSLVDMHILLSCVDEAKFD FT LDKKTWEANIQETVHTLLRFGMLSEPAGFEVFSDFTSSPLYSFIRGQFDNKLSTLVQDK FT PVRRLIFDGPPLHFTFYTENWCDGLMEHLTKKIQSDSQETVFPSNPFKDDKVILPLRGN FT NKGISFFKHVLALMAERDPATVMRWM" XX SQ Sequence 2632 BP; 797 A; 502 C; 525 G; 808 T; 0 other; ggggagtata gcttaagcta tactcaagga ctaagtcctc cctcagagaa ttacacccct 60 ctgagatggg tggaaacttg tttatacttt cgctatagct atacgcgtat agggcagtac 120 cttccccgcc gtgcgatcga ctaacttaaa tgttagtgaa ctcacaaata aagaatgttt 180 accagttctt tatggcgatt ccctgtaaga taccttactt tagtagtaag tgtgtcttcc 240 atcggttaaa tatttaaata aacataaaac catgatgaaa agactaacac tattacaaaa 300 caagagtaat caacttacga ataatgactt atctaatgtt ggatatataa ctatgaagtt 360 atttccacac tggataagat tattagtatg aagtttacaa ttgtctcctg ctccgtacaa 420 gaagttcgga tcgagaatag cagttctttg aaaggctaac ggtgtttctt tcaccgttca 480 gtacttaaaa gaatgtacta gaatcgtcca acacttcgtg tcgggccacc cggtattcgt 540 cactgacgta atgccgattg gtctagctgg aggacttcca acaataatac ctggaacctt 600 gagaactctt ttgagatcta aggatcctag tactataagg ggagtcttgt ctaccttggc 660 agtttataga ataatgaaaa tgccttgtaa acttaagtta gagtctatca ctgatccttt 720 taaagggatc tctgatactc ttcctaagca tgaggtcatt aacggattag cagcattagg 780 tcttgaaacc ccgaagggga aatcaaagca ccgtttgact ttaactaatc ctatcattta 840 tctattgtcc gccgggccaa atcactctat atcaatgatg ggtatctgaa aagatatcta 900 tgcttgatat ataagtccgt tattccctac tcttctatcc tttattggaa ggatgaatag 960 aggtaacgtt cttattgatt tgctaagatc cgaagtctct cactgagagg caacaggggt 1020 taaaccctct gttagcccct tagagttgaa actaggaaaa ctagcaatca aagaggaagc 1080 agccggaaag gctagagtct tcgccatggc ggattccatt acacaaagtg taatggctcc 1140 actgaatagt tgagtcttta gtaaattaaa gggccttcca atggatggaa ccttcaatca 1200 acaagctcca ctaaacagat tagtccaact ttataaagaa ggacttctcc atgacgtaga 1260 attctattct tacgatctga gttctgctac cgatagatta cctatggcct ttcagaagca 1320 aattatatcc gtattattcg gatctgattt tgctgatgat tgagctactc tccttgttgg 1380 gagagactgg tatcttaagg atattcctta tagatattcc gttgggcaac ctatgggagc 1440 cttatcatca tgagcaatgc ttgcattgtc tcatcatgta attgtacaaa tagccgcaat 1500 gagagtcggt aaactctcat tcactaatta tgcattactt ggcgatgata ttgtgatagc 1560 cgataaggct gtcgcaacat cttatcacat gataatgact cagatacttg gggttgaaat 1620 caacttatcc aaatcacttg tctctagtaa ctctttcgag cttgctaaga gattggtgac 1680 tatggatggg gaagtttcag ctgtgggagc taagaattta ttagtagctc taaaatctag 1740 atgaggaatc tcatcagtga ttttagacct gtataataaa ggattagcac tttccgaaca 1800 agatctaagg caaagatttt catctatccc tactgtttca aaacagtttg gggttgataa 1860 acttctttga ctagttcttg gtccgtttgg ttttatccca tctaaagatg gtctatcagc 1920 tttcatgaag ttgaatagat cactctcttt agtagatatg catattttgc tatcttgtgt 1980 tgacgaagct aagtttgact tagataagaa aacatgagaa gctaatatac aggagacagt 2040 ccatacctta ttaaggtttg gaatgttatc tgaaccagct ggctttgaag tctttagtga 2100 cttcacttct tcaccgttat actcctttat aagaggacaa tttgataaca aattgtctac 2160 tcttgtgcag gataaaccgg tgagaaggtt aatctttgac gggccaccat tacacttcac 2220 tttctataca gaaaattggt gtgatggttt aatggaacac ttaactaaga aaatccaatc 2280 ggattctcaa gagacagtgt tcccatctaa cccgttcaag gatgataagg tcatcttacc 2340 attaaggggg aacaataaag gaatttcttt ctttaaacat gttctcgcct tgatggcaga 2400 aagggatcca gctacagtaa tgagatgaat gtaaatcatt catatccttc accgtagggg 2460 cggattagta tccaatacac ataggggtaa cctatatgtg gggaaactac gcttaaagaa 2520 taccttggct ttcaaatatg actactcctt ttaatacatg ggcccgataa accaggggga 2580 ggatgatggg taaaaggtcc attggaaagc ttagttatat ctctaagccc cg 2632 //