ID   AY168787; SV 1; linear; mRNA; STD; VRL; 2260 BP.
XX
AC   AY168787;
XX
DT   31-DEC-2002 (Rel. 74, Created)
DT   28-JUN-2007 (Rel. 92, Last updated, Version 4)
XX
DE   Infectious salmon anemia virus isolate Bremnes 98 segment 1, complete
DE   sequence.
XX
KW   .
XX
OS   Salmon isavirus
OC   Viruses; Riboviria; Negarnaviricota; Polyploviricotina; Insthoviricetes;
OC   Articulavirales; Orthomyxoviridae; Isavirus.
XX
RN   [1]
RP   1-2260
RX   DOI; 10.1016/S0168-1702(02)00322-2.
RX   PUBMED; 12606081.
RA   Snow M., Ritchie R., Arnaud O., Villoing S., Aspehaug V., Cunningham C.O.;
RT   "Isolation and characterisation of segment 1 of the infectious salmon
RT   anaemia virus genome";
RL   Virus Res. 92(1):99-105(2003).
XX
RN   [2]
RP   1-2260
RA   Villoing S., Biering E., Krossoy B.;
RT   ;
RL   Submitted (25-OCT-2002) to the INSDC.
RL   R&D, Intervet Norbio AS, Thormohlensgate 55, Bergen 5008, Norway
XX
DR   MD5; 5e3fcec4a89b44ceb0fec614afe9b849.
DR   EuropePMC; PMC1851003; 17394643.
DR   EuropePMC; PMC3003268; 21092282.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..2260
FT                   /organism="Salmon isavirus"
FT                   /segment="1"
FT                   /isolate="Bremnes 98"
FT                   /mol_type="mRNA"
FT                   /db_xref="taxon:55987"
FT   CDS             10..2178
FT                   /codon_start=1
FT                   /product="putative RNA polymerase PB2 subunit"
FT                   /db_xref="UniProtKB/TrEMBL:Q8B470"
FT                   /protein_id="AAO12126.1"
FT                   /translation="MDFISENTISDKTTLEELKNATLFQVTKVDDRDCLKARRICNAPK
FT                   GHWAGLMEKAKAMGDPTEEEKDELKKIVESYNTVSVLGVSKSEGATGPRLVSSLKGLKN
FT                   LLPGVNPKTLQETLLVGAPCPSTEPTTEEYWNVCRAAVGASMGSAKINMSQKVVMGASV
FT                   IGWGQLNQSGPGVYFLNTKEIVTAEGKVDETRGPLERTSAPLMRDISRLIRETIEEVET
FT                   GGDPSFSVRSEGGSKIEGRIAFSLHSEVSTLKMRIALEQKLAKYEYMGENLLTLVKNTS
FT                   IDRMQPDSAMMGKMVLESLRTHTVSSEQLNGRMITVQSQGLETIAISSPFDVEYDDGYV
FT                   FTRMKGNFVAVGRDYKGAILCFREGQGTFFSGRGNWSGLMEKCLVEMRLCPCFYSCTWQ
FT                   DYPDKKSLYEKATFEAKQIVFAMGENTGVDIRVNTDGEIGDKGISLLTREREDKYMSKV
FT                   SYECRVVSGKLVMGLDKMSRVAKGNLEVVREKGDDTSQSDSFYEGVLQVGSMIGTTMES
FT                   LKQQLQGPVGIWRASGVSAMERCMKRGQSKTVVASARYTFQKMMEKMATGREVSKYSLI
FT                   IVMRCCIGFTSEANKRALTNISGTGYYISVAQPTVVKLAGEWLITPVGRSKTGEVQYVS
FT                   AKLKKGMTTGKLELIKKADRSDLDNFPEPSADELLREGTIVLMQIGKDKWLCRVRTGDR
FT                   RVRTDTDIQRAEAKSQVEKEDLMDEYGV"
XX
SQ   Sequence 2260 BP; 794 A; 386 C; 610 G; 470 T; 0 other;
     cagctaagaa tggactttat atcagaaaac acgatcagcg acaaaaccac gctagaagaa        60
     ctgaaaaatg ctactttatt ccaagttact aaagtagacg acagggattg tctaaaagca       120
     agaagaatat gtaatgcacc taaagggcac tgggctggtc taatggaaaa agccaaggca       180
     atgggagacc caactgaaga ggaaaaagat gaattaaaga aaatagtcga gtcatacaac       240
     acagtatcag tgctgggtgt gtccaagtca gaaggagcaa caggaccaag gctggtctct       300
     agtttgaaag gactaaaaaa ccttctacct ggggtaaacc ccaagacact acaggaaaca       360
     cttctggtag gggcaccatg cccctcaacg gaaccaacta ccgaggagta ctggaatgtg       420
     tgtagagcag cagttggagc atcaatgggt tcagccaaga tcaatatgtc tcagaaggtg       480
     gtgatgggag ctagcgtcat cggatggggc caactgaacc aaagcggtcc aggagtgtat       540
     ttcttgaaca ctaaggaaat agttacagca gaagggaagg tagacgaaac aagaggaccc       600
     cttgaaagaa catcagctcc tctaatgaga gatatatcca ggctcattcg agaaacaata       660
     gaagaagttg aaacaggagg agatccctcc ttttcagtaa ggagtgaagg aggatcgaag       720
     attgaaggaa gaattgcatt ctctctccat tcagaagtgt caacattgaa aatgagaata       780
     gcactggagc aaaaactggc taaatacgag tacatgggag agaacttgtt gacacttgtc       840
     aagaacacgt caatagacag gatgcagccg gactctgcta tgatggggaa gatggtgctg       900
     gaaagcctga gaacacacac tgtttcatct gagcagctga atgggaggat gatcacagta       960
     cagtctcaag gattggaaac catagcaata tcaagtccgt tcgatgtgga atacgatgat      1020
     ggatacgttt tcacgaggat gaaagggaac tttgttgcag tcggacgaga ttacaaaggg      1080
     gccatattat gtttcagaga aggtcaagga acattcttca gcggaagagg aaattggtca      1140
     ggactgatgg aaaaatgtct ggttgagatg agactatgtc cgtgcttcta cagctgcaca      1200
     tggcaagact acccagataa gaagagtctg tacgaaaagg caaccttcga agccaaacag      1260
     atagtgtttg caatgggaga aaacacaggg gtggacataa gagtgaacac agacggtgag      1320
     atcggagata aaggaatatc gctactcaca agagagagag aagataagta catgtcaaag      1380
     gtgtcatacg aatgcagagt tgtgagcgga aaactggtta tgggtctgga caagatgagc      1440
     agagtagcga aggggaactt agaagtagtt agggagaaag gagatgatac tagtcagtca      1500
     gactcttttt atgagggagt tttgcaagtg ggtagcatga taggcacaac gatggaaagc      1560
     ctcaaacaac aacttcaagg acctgtcgga atctggagag cttcaggggt gtctgctatg      1620
     gagaggtgta tgaagagagg tcaaagtaag acagtagtgg caagtgcaag atacactttc      1680
     cagaaaatga tggagaagat ggcaacaggt agagaagtgt cgaagtacag cttgattatt      1740
     gtcatgagat gctgcattgg tttcacttca gaagctaaca aaagagcact caccaacatc      1800
     tcaggaacag gttactacat tagtgttgca cagccaacag tggtgaaact agccggagaa      1860
     tggttgatca ccccagtggg tagatccaaa actggtgagg tgcaatatgt ttcggccaaa      1920
     ctgaagaagg gaatgaccac aggaaaacta gaactgatta aaaaagcaga cagatcagat      1980
     ctggacaatt ttcctgaacc atcagcagat gaactgctaa gagagggaac gatcgtgcta      2040
     atgcaaatag ggaaagacaa gtggctttgc agagtaagaa caggggacag aagagttagg      2100
     acagacacag acatacaaag agccgaagcc aagtcacaag tcgaaaaaga agacctgatg      2160
     gatgaatatg gtgtttaatc aatgagtgtt ggtcaatatt gctggtggtt ctttggtggg      2220
     taagtctttg acgatctttt aatcattaaa aaaaaaaaaa                            2260
//