Dbfetch
ID AY166663; SV 1; linear; genomic RNA; STD; VRL; 3536 BP. XX AC AY166663; XX DT 14-OCT-2003 (Rel. 77, Created) DT 14-OCT-2003 (Rel. 77, Last updated, Version 1) XX DE Tobacco rattle virus isolate BM segment RNA2, complete sequence. XX KW . XX OS Tobacco rattle virus OC Viruses; Riboviria; Virgaviridae; Tobravirus. XX RN [1] RP 1-3536 RX DOI; 10.1016/S0168-1702(03)00177-1. RX PUBMED; 12951269. RA Crosslin J.M., Thomas P.E., Hammond R.W.; RT "Genetic variability of genomic RNA 2 of four tobacco rattle tobravirus RT isolates from potato fields in the Northwestern United States"; RL Virus Res. 96(1-2):99-105(2003). XX RN [2] RP 1-3536 RA Crosslin J.M., Hammond R.W., Thomas P.E.; RT ; RL Submitted (17-OCT-2002) to the INSDC. RL Molecular Plant Pathology Laboratory, USDA-ARS, 10300 Baltimore Avenue, RL Beltsville, MD 20705, USA XX DR MD5; 0778e975c061ba87c43c66d5365be66d. DR RFAM; RF01101; TLS-PK6. XX FH Key Location/Qualifiers FH FT source 1..3536 FT /organism="Tobacco rattle virus" FT /segment="RNA2" FT /isolate="BM" FT /mol_type="genomic RNA" FT /db_xref="taxon:12295" FT CDS 524..1126 FT /codon_start=1 FT /product="capsid protein" FT /note="coat protein" FT /db_xref="GOA:Q6YA83" FT /db_xref="InterPro:IPR001337" FT /db_xref="InterPro:IPR036417" FT /db_xref="UniProtKB/TrEMBL:Q6YA83" FT /protein_id="AAO37854.1" FT /translation="MTDGMYDEEFDSKALNETFSPWVEEKNWKDVLMRLSAMKFALQAD FT RDKIPGVLSDLKKDCPFSAFKRFPDKEMWSKLTKEAAIALAQIQAASSFKRRADEKNAV FT SGLIAATPAQASTGNANPSGSVTTVVRPPRLDDSSFQEDSFSFGKFDDASTAYHKALSY FT LEGLNLKPLYRRQLEKSYNTRWVPAAAPVAPGPRPNP" FT CDS 1239..2204 FT /codon_start=1 FT /product="putative 37.6 kDa 2b protein" FT /db_xref="UniProtKB/TrEMBL:Q6YA82" FT /protein_id="AAO37855.1" FT /translation="MEEYRLWSKNPDYFFSDNAKLFLLHGHHDSPYYKSGEYTGFRSVN FT WGDPEFLMVIGMSRLLTFLSERHLCINVDGNCYSRIQEGLYYYGKFDIYSLMVGNSTQW FT DDFLIYRELMRVHIDFRNVLELLQLAGADRGRLFPRLRELLDLEKVVYSTSKLPDKDIT FT LMIQNLKDQLSATTLENDNLKKEIAMLKSRVEAAQAQAQTRHLENDDLKKQIESLKKKT FT ADVGSISEAIVQVPVVLPAKPTPKVKKYPDDYNNEELSAMSKVGDDNDFEHLSPIDKRI FT WGPKDIYHYVKMYYRFPQRNFIDERIVKDKEREDRRASGL" FT CDS 2216..3115 FT /codon_start=1 FT /product="putative 33.6 kDa 2c protein" FT /db_xref="UniProtKB/TrEMBL:Q6YA81" FT /protein_id="AAO37856.1" FT /translation="MTSASIWTLRQGDYPKGSMLIRRRVKNSVLTGKGGYVDLDGNVAV FT GTGWRWEIDFSDLRKLRFSFDSSDTMFGHLRLTFELFTTVNFKSIASYKHEGYKSSPSN FT KLLLLNKVATNNSYTVTVDEELIRATSFEVVFEWPAPVMASAEMDATLYGFFHSHKAYT FT HMFPITSGFYSSSEQAVRAEEVSVLIKYVPGPLTTGLFSLTGLLTITVDFPVNDDRKVD FT FKGFENSNFRVTGIKALVDENQRVTLTANVNLLAANLPRRCYWLGQIAVMLRKGGVYKR FT IDWTDHLDLVLPSLPSRP" FT misc_feature 3120..3536 FT /note="proposed RNA1-derived sequence" XX SQ Sequence 3536 BP; 999 A; 631 C; 857 G; 1049 T; 0 other; ataaaacatt gcaccattgg tgttgccctg gccggggtgt gtctttgaac gcagtagaat 60 gtgctaattg acaagttgga gaacgcggta gaacgtactt atccgacacg gccttttatc 120 cctttgttga gaggtttttc tcagccgcaa tgaaattctg gatttagttg gccgctagaa 180 ggctgaagga atgtagttgt gtttttagtt tagttaataa gtgtcttcca atacacatta 240 aaccttggac gtgttagcta cgaaagtgtg taaattttaa aaacaattag tcttccgtga 300 ttaaggatga ttaaggctaa aaacgattgt taatgatttt ggcaatcgca tccattcgct 360 atcacaagcg atggtggcat tgacccggaa aggtctaatc ttgcggtcat tcgactggaa 420 gaagcataat tatactgatt gtgcaacttt gtgttactat tctgacagtg attcttgctg 480 aactactggt tactgtatca cttgcgatca ctcacgttcc gctatgacag acggtatgta 540 cgatgaggag tttgatagca aagctctcaa cgaaacgttt tcgccatggg ttgaggagaa 600 gaactggaaa gacgttctaa tgaggttgag cgctatgaaa tttgcgttac aagctgacag 660 ggacaaaatt cctggggttt tatcagatct gaagaaagac tgtcctttca gtgcttttaa 720 gaggtttcct gacaaagaga tgtggtcgaa attgacgaag gaggctgcca ttgctttagc 780 tcaaattcaa gctgcttctt cttttaagag gagggcagat gaaaagaatg ccgtttctgg 840 gttgattgct gcaacacctg ctcaagcttc tactggtaac gcgaacccaa gtggttcagt 900 aaccacagtg gtgagaccac caaggttgga cgactcgtct tttcaagagg atagcttttc 960 ttttggcaaa ttcgatgacg cttctactgc gtatcataaa gctctctcct atttggaagg 1020 tttaaatttg aaaccgttat ataggagaca gcttgagaaa tcgtacaaca ctaggtgggt 1080 tcctgctgcc gctccggtgg cgcctgggcc gcgtccgaat ccctaattct gagtttgtca 1140 gatactcttt cagagggtca cgtgaaaatc gtgaggtggt gttcaccata taacataatg 1200 ctatatgtgg gcatttaaaa taatcacatt gctgcgagat ggaggagtat aggctttggt 1260 caaagaatcc ggattacttc ttttccgaca atgcaaaact gttcttactg catgggcatc 1320 acgatagtcc gtattataag agcggggaat acactggttt tcgttcggtt aattggggag 1380 atcctgaatt tcttatggta attggaatgt ctagactttt aacttttcta tcagaaagac 1440 atttatgtat caatgtggac gggaattgtt attcgcggat ccaagagggt ctgtactact 1500 atggaaagtt tgacatttac tcgttaatgg ttggaaatag tactcagtgg gatgatttcc 1560 taatttatcg agagctaatg agagttcaca tcgactttcg taacgtgtta gaacttcttc 1620 agctggctgg cgctgataga ggtcgactgt ttcctaggtt gcgagaattg ttagacctcg 1680 aaaaggtcgt ttattcgacg tcaaaactac cggacaaaga tattacgctg atgatacaaa 1740 atctcaaaga tcagttgtct gcgacgactt tagagaacga caatttgaag aaagagatcg 1800 ccatgctgaa gagtcgagtc gaagctgcac aagcgcaagc tcagactaga catctcgaaa 1860 acgacgatct gaagaaacaa atcgagtcgt tgaagaagaa aaccgcagat gtgggaagta 1920 tctctgaagc tattgttcaa gtaccggtgg tgttgcctgc gaagccgact cctaaagtta 1980 agaagtatcc cgatgattac aacaacgagg aactgagtgc aatgtcaaag gtaggcgatg 2040 ataatgattt cgagcattta tccccaattg acaaaagaat ttggggccct aaggatatat 2100 atcattatgt taagatgtat tacagattcc cgcagaggaa tttcatagac gaacgcattg 2160 tcaaagacaa ggaaagagaa gacagacgcg caagcggtct gtagaccagc ataaaatgac 2220 gagcgcatcc atctggaccc taagacaggg tgattacccg aagggttcta tgttaattcg 2280 taggagggtt aaaaattctg tcttgactgg gaaaggtggt tacgtggatc tggacggtaa 2340 tgtagcggtc ggaactggat ggcgatggga aatcgacttt agtgacctgc gtaagctgcg 2400 attttcgttt gattcttcag atactatgtt tggtcactta cggttaactt ttgaactatt 2460 cactacggtg aattttaagt caatagcctc ttataagcat gaaggttaca agtcgtcacc 2520 gtcgaataag ctgttgcttc tcaacaaggt agcgaccaac aatagttata cggtgacggt 2580 agacgaagaa ctcataagag cgacttcttt tgaagttgtc ttcgaatggc ctgcaccagt 2640 gatggcaagt gccgagatgg atgcgactct ttatgggttc ttccattctc acaaggctta 2700 cactcatatg tttccgataa ctagtggttt ctactccagt tctgagcaag ctgttcgtgc 2760 tgaagaagtg agtgtgctaa ttaaatacgt gccgggacct ttaaccaccg gtttgttctc 2820 gttgactggg ttgttaacaa taacagtgga ttttcctgta aacgatgaca gaaaggtaga 2880 ttttaaaggt tttgagaatt ccaattttcg agtcactggc ataaaagcac tcgttgatga 2940 aaatcaaaga gttactttaa cggccaacgt caatttgtta gcggcaaatc tacctcgacg 3000 ctgttactgg ctagggcaaa ttgctgttat gttaaggaaa ggtggtgtct acaaacgtat 3060 agattggacc gatcacttgg acttagtgct tccttcgcta ccttcaagac cttaagggtt 3120 gacgtaggtg tgcggaaagt gattgtggat gtactacggt ttaaaagtct cgaaattcga 3180 aaccctctaa gaagaaattc aaagagagaa aagattttgg gacaccaaaa agatttttaa 3240 gagatgatgt tcctttcgga attgatcaat tgtttgcttt ttgattttat tttaaattgt 3300 tatctgtttc agtgtataga ctgtttgaga ttggtgtttg gccgactcat tgtcttacca 3360 taggggaacg gactttgttt gtgttgttat tttatttgta ttttattaaa attctcaata 3420 atctgaaaag gctttgttgc caagagattg ttggggggtg agtaagtact tttaaagtga 3480 tgatggctac aaaggcaaaa ggggtaaaac ccctcgccta cgtaagcgtt attacg 3536 //