ID AY166661; SV 1; linear; genomic RNA; STD; VRL; 3679 BP. XX AC AY166661; XX DT 14-OCT-2003 (Rel. 77, Created) DT 14-OCT-2003 (Rel. 77, Last updated, Version 1) XX DE Tobacco rattle virus isolate OR2 segment RNA2, complete sequence. XX KW . XX OS Tobacco rattle virus OC Viruses; Riboviria; Virgaviridae; Tobravirus. XX RN [1] RP 1-3679 RX DOI; 10.1016/S0168-1702(03)00177-1. RX PUBMED; 12951269. RA Crosslin J.M., Thomas P.E., Hammond R.W.; RT "Genetic variability of genomic RNA 2 of four tobacco rattle tobravirus RT isolates from potato fields in the Northwestern United States"; RL Virus Res. 96(1-2):99-105(2003). XX RN [2] RP 1-3679 RA Crosslin J.M., Hammond R.W., Thomas P.E.; RT ; RL Submitted (17-OCT-2002) to the INSDC. RL Molecular Plant Pathology Laboratory, USDA-ARS, 10300 Baltimore Avenue, RL Beltsville, MD 20705, USA XX DR MD5; f3463541d3b3cfe573e5f08f883f0bc5. DR RFAM; RF01101; TLS-PK6. XX FH Key Location/Qualifiers FH FT source 1..3679 FT /organism="Tobacco rattle virus" FT /segment="RNA2" FT /isolate="OR2" FT /mol_type="genomic RNA" FT /db_xref="taxon:12295" FT CDS 523..1125 FT /codon_start=1 FT /product="capsid protein" FT /note="coat protein" FT /db_xref="GOA:Q6YA89" FT /db_xref="InterPro:IPR001337" FT /db_xref="InterPro:IPR036417" FT /db_xref="UniProtKB/TrEMBL:Q6YA89" FT /protein_id="AAO37848.1" FT /translation="MTDGMYDEESDSKALNETFSPWVEEKNWKDVLMRLSAMKFALQAD FT RDKIPGVLSDLKKDCPFSAFKRFPDKEMWSKLTKEAVIALAQIQAASSFKRRADEKNAV FT SGLITTTPAQASTSNANPSGSATTVVRPPRLDDSSFQEDSFSFGKFDDASTAYHKALSY FT LEGLNLKPLYRRQFEKSYNTRWVPAAAPVAPGPRPNP" FT CDS 1238..2203 FT /codon_start=1 FT /product="putative 37.6 kDa 2b protein" FT /db_xref="UniProtKB/TrEMBL:Q6YA88" FT /protein_id="AAO37849.1" FT /translation="MEEYRLWSKNPDYFFSDNAKLFLLHGHHDSPYYKSGEYTVSRSVN FT WGDPEFLMVIGMSRLLTFLSERHLCINVDGNCYSRIQEGLYYYGKFDIYSLMVGNSTQW FT DDFVIYRELMRVHIDFRNVLELLQLAGADRGRLFPRLRELLDLEKVVYSTSKLPDKDIT FT LMIQNLKDQLSATTLENDNLKKEIVMLKSPVEAAQAQAQTRHLENDDLKKQIESLKKKT FT ADVGSISEAIVQVPVVLPAKPTPKVKKYPDDYNNEELSAMSKVSDDNDFEHLSPIEKRI FT WGPKDVYHYVKMYYRFPQRNFIDERIVKDKEREDRRACGL" FT CDS 2215..3114 FT /codon_start=1 FT /product="putative 33.6 kDa 2c protein" FT /db_xref="UniProtKB/TrEMBL:Q6YA87" FT /protein_id="AAO37850.1" FT /translation="MTSASIWTLRQGDYPKGSMLIRRRVKNSVLTGKGGYVDLDGNVAV FT GTGWRWGIDFSDLRKLRFSFDSSDTMFDHLRLTFEIFTTVNFKSIASYKHEGYKSSPSN FT KLLLLNKVVTNNSYMVTVDVELIRATSFEVVFEWPAPVMASAEMDATLYGFFHSHKAYP FT HMFPITSGFYSSSEQAVRAEEVSVLIKYVPGPLTTGLFSLTGLLTITVDFPVNDDRKVD FT FKGFENSNFRVTGIKALVDESQRVTLTANVNLLAATLPRRCYWLGQIAVMLRKGGVYKR FT IDWTDHLDLVLPSQPSRP" FT misc_feature 3139..3679 FT /note="proposed RNA1-derived sequence" XX SQ Sequence 3679 BP; 1056 A; 651 C; 882 G; 1090 T; 0 other; ataaaacatt gcacctttgg tgttgccccg gccggggtgt gtctttgaac gcagtagaat 60 gtgctaattg acaagttgga gaacgcggta gaacgtactt atccgacacg gccttttatc 120 cctttgttga gaggtttttc tcagccgcaa tgaaattctg gatttagttg gccgctagaa 180 ggctgaagga atgtagttgt gtttttagtt tagttaatat gtgtcttcca atacacatta 240 aaccttggac gtgttagcta cgaaagtgtg taaatttaaa aacaattagt cttccgtgat 300 taaggatgat taaggctaaa aacgattgtt aatgattttg gcaatcgcat ccattcgcta 360 tcacaagcga tggtggcatt gacccggaaa ggtctaatct tgcggtcatt cgactggaag 420 aagcataatt atactgattg tgcaactttg tgttactatt ctgacagtga ttcttgctga 480 actactggtt actgtatcac ttgcaatcac tcacgttccg cgatgacaga cggtatgtac 540 gatgaggagt ctgatagcaa agctctcaac gaaacgtttt cgccatgggt tgaggagaag 600 aactggaaag acgttctaat gaggttgagc gctatgaaat ttgcgttaca agctgacagg 660 gacaaaattc ctggggtttt atcagatctg aaaaaggact gtcctttcag tgcttttaag 720 aggtttcctg acaaagagat gtggtcgaaa ttgacgaagg aggctgtcat tgctttagct 780 caaattcagg ctgcttcttc ctttaagagg agagcagatg aaaagaatgc cgtttctggg 840 ttgattacta caacacctgc tcaagcttct actagtaacg cgaacccaag tggttcagca 900 accacagtgg tgagaccacc aaggttggac gactcgtctt tccaagaaga tagcttttct 960 tttggtaagt tcgatgacgc ttctactgcg tatcataaag ctctctccta tttggaaggt 1020 ttaaatttga aaccgttata taggagacag tttgagaaat cgtacaacac taggtgggtt 1080 cctgctgccg ctccggtggc gcctgggccg cgtccgaatc cctaattcta agtttgtcag 1140 atactctttc agagggtcac gtgaaaatcg tgaggtggtg tttaccatat aacataatgt 1200 catatgtggg catttaaaat aatcacattg ctgcaagatg gaggagtata ggctttggtc 1260 aaagaatccg gattacttct tttccgacaa tgcaaaactg ttcttactgc atgggcatca 1320 cgatagtccg tattataaga gcggggaata cactgtttct cgttcggtta attggggaga 1380 tcctgaattt cttatggtaa ttggaatgtc tagactttta acttttctat cagaaagaca 1440 tttatgtatc aatgtggacg ggaattgtta ttcgcggatc caagagggtc tgtattacta 1500 tggaaagttt gacatttact cgttgatggt tggaaatagt actcagtggg atgatttcgt 1560 aatttataga gagctaatga gagttcacat cgactttcgt aacgtgttag aacttcttca 1620 gctggctggc gctgatagag gtcgactgtt tcctaggttg cgagaattgt tagacctcga 1680 aaaagtcgtt tattcgacgt caaaactacc ggacaaagat attacgctga tgatacaaaa 1740 tctcaaagat cagttgtctg cgacgacttt agagaacgac aatttgaaga aagagatcgt 1800 catgctgaag agtccagtcg aagctgcaca ggcgcaagct cagactagac atctcgaaaa 1860 cgacgatctg aagaaacaaa tcgagtcgtt gaagaagaaa accgcagatg tgggaagtat 1920 ctctgaagct attgttcaag taccggtggt gttgcctgcg aagccgactc ctaaagttaa 1980 gaagtatccc gatgattaca acaacgagga actgagtgca atgtcaaagg taagcgatga 2040 taatgatttc gagcatttat caccaattga aaaaagaatt tggggcccta aggatgtata 2100 tcattatgtt aagatgtatt acagattccc acagaggaat ttcatagacg aacgcattgt 2160 caaagacaag gaaagagaag acagacgcgc atgcggtctg tagaccagca taaaatgacg 2220 agcgcatcca tctggaccct aagacagggc gattacccga agggttctat gttaattcgt 2280 aggagggtta aaaattctgt cttgactgga aaaggtggtt acgtagatct ggacggtaat 2340 gtagcggtcg gaactggatg gcgatgggga atcgacttta gtgacctgcg gaagctgcga 2400 ttttcgttcg attcttcaga tactatgttt gatcatttac ggttaacttt tgaaatattc 2460 actacggtga attttaagtc aatagcttct tataagcacg aaggttacaa gtcgtcaccg 2520 tcgaataagc tgttgcttct caacaaggta gtgaccaaca atagttatat ggtgacggta 2580 gatgtagaac tcataagagc gacttctttt gaagttgtct tcgaatggcc tgcaccagtg 2640 atggcaagtg ccgagatgga tgcgactctt tatgggttct tccattctca caaggcttac 2700 cctcatatgt ttccgataac tagtggtttc tactccagtt ctgagcaagc tgttcgtgct 2760 gaagaagtga gtgtgctaat taaatacgtg ccgggacctt taaccaccgg tttgttctcg 2820 ttgactgggt tgttaacaat aacagtggat tttcccgtaa acgatgacag aaaggtagat 2880 tttaaaggtt ttgagaattc caattttcga gtcactggca taaaagcact cgttgatgaa 2940 agtcaaagag ttactttaac ggccaacgtc aatttattag cggcaactct acctcgacgt 3000 tgttactggc tagggcaaat tgctgttatg ttaaggaaag gtggtgtcta caaacgtata 3060 gattggaccg atcacttgga cttagtgctt ccttcgcaac cttcaagacc ttaagggttg 3120 acgtaggtgc gcggaaagta attgtggatg gtttgtctgt attattatca atgattttac 3180 ttttgatatg tataattgaa ggggtttcca acttggaaaa tgtcgtaaac gcgttgaagc 3240 aagaaatcga gagatctgga aacagattcg acgaaatcaa gctgaaaaca cgtcttcgac 3300 acctaaaaag tctcataatt cgaagacctc taagaagaaa ttcaaagggg tcagagaatt 3360 tggggcacca aaaagatttt taagagatga tgttccgtta ggaattgatc aattatttgc 3420 tttttaattt tgttttaaat tgttatctgt ttctgtgtat agactgtttg agattggcgc 3480 ttggccgact cattgtctta ccatagggga acggactttg tttgtgttgt tattttattt 3540 gtattttatt aaaattctca atgatctgaa aaggcctcga ggctaagaga ttattggggg 3600 gtgagtaaat acttttaaag tgatgatggt tacaaaggca aaaggggtaa aacccctcgc 3660 ctacgtaagc gttattacg 3679 //