ID AY166660; SV 1; linear; genomic RNA; STD; VRL; 2905 BP. XX AC AY166660; XX DT 14-OCT-2003 (Rel. 77, Created) DT 14-OCT-2003 (Rel. 77, Last updated, Version 1) XX DE Tobacco rattle virus isolate Umt1 segment RNA2, complete sequence. XX KW . XX OS Tobacco rattle virus OC Viruses; Riboviria; Virgaviridae; Tobravirus. XX RN [1] RP 1-2905 RX DOI; 10.1016/S0168-1702(03)00177-1. RX PUBMED; 12951269. RA Crosslin J.M., Thomas P.E., Hammond R.W.; RT "Genetic variability of genomic RNA 2 of four tobacco rattle tobravirus RT isolates from potato fields in the Northwestern United States"; RL Virus Res. 96(1-2):99-105(2003). XX RN [2] RP 1-2905 RA Crosslin J.M., Hammond R.W., Thomas P.E.; RT ; RL Submitted (17-OCT-2002) to the INSDC. RL Molecular Plant Pathology Laboratory, USDA-ARS, 10300 Baltimore Avenue, RL Beltsville, MD 20705, USA XX DR MD5; 7182b1c8b061e0e02dac7903780e4409. DR RFAM; RF01101; TLS-PK6. XX FH Key Location/Qualifiers FH FT source 1..2905 FT /organism="Tobacco rattle virus" FT /segment="RNA2" FT /isolate="Umt1" FT /mol_type="genomic RNA" FT /db_xref="taxon:12295" FT CDS 523..1125 FT /codon_start=1 FT /product="capsid protein" FT /note="coat protein" FT /db_xref="GOA:Q6YA91" FT /db_xref="InterPro:IPR001337" FT /db_xref="InterPro:IPR036417" FT /db_xref="UniProtKB/TrEMBL:Q6YA91" FT /protein_id="AAO37845.1" FT /translation="MTDGMYDEEFDSKALNETFSPWVEEKNWKDVLMRLSAMKFALQAV FT RDKIPGVLSDLKKDCPFSAFKRFPDKEMWSKLTKEAVIALAQIQAASSFKRRADEKNAV FT SGLITTTPAQASTGNANPSGSATTVVRPPRLDDSSFQEDSFSFGKFDDASTAYHKALSY FT LEGLNLKPLYRRQFEKSYNTRWVPAAAPVAPGPRPNP" FT CDS 1240..2205 FT /codon_start=1 FT /product="putative 37.6 kDa 2b protein" FT /db_xref="UniProtKB/TrEMBL:Q6YA90" FT /protein_id="AAO37846.1" FT /translation="MEEYRLWSKNPDYFFSDNAKLFLLHGHHDSPYYKSGEYTVSRSVN FT WGDPEFLMVIGMSRLLTFLSERHLCINVDGNCYSRIQEGLYYYGKFDIYSLMVGNSTQW FT DDFVIYRERMRVHIDFRNVLELLQLTGADRGRLFPRLRELLDLEKVVYSTSKLPDKDIT FT LMIQNLKDQLSATTLENDNLKKEIVMLKSRVEAAQAQAQTRHLENDDLKKQIESLKKKT FT ADVGSISEAIVQVPVVLPAKPTPKVKKYPDDYNNEELSAMSKVSDDNDFEHLSPIEKRI FT WGPKDVYHYVKMYYRFPQRNFIDERVVKDKEREDGRASGL" FT CDS 2217..2468 FT /codon_start=1 FT /product="truncated 33.6 kDa 2c protein" FT /protein_id="AAO37847.1" FT /translation="MTSASIWTLRQGDYPKGSMLIRRRVKNSVLTGKGGYVDLDGNVAV FT GTGWRWEIDFSDLRMILLLICIIVVAVATLENVVNALK" FT misc_feature 2411..2905 FT /note="proposed RNA1-derived sequence" XX SQ Sequence 2905 BP; 840 A; 500 C; 713 G; 852 T; 0 other; ataaaacatt gcacctatgg tgttgccctg gccggggtgt gtctttgaac gcagtagaat 60 gtgctaattg acaagttgga gaacgcggta gaacgtactt atccgacacg gccttttatc 120 cctttgttga gaggtttttc tcagccgcaa tgaaattctg gatttagttg gccgctagaa 180 ggctgaagga atgtagttgt gtttttagtt tagttgataa gtgtcttcca atacacatta 240 aaccttggac gtgttagcta cgaaagtgtg taaatttaaa aacaattagt cttccgtgat 300 taaggatgat taaggctaaa aacgattgtt aatgattttg gcaatcgcat ccattcgcta 360 tcacaagcga tggtggcatt gacccggaaa ggtctaatct tgcggtcatt cgactggaag 420 aagcataatt atactgattg tgcaactttg tgttactatt ctgacagtga ttcttgctga 480 actactggtt actgtatcac ttgcaatcac tcacgttccg cgatgacaga cggtatgtac 540 gatgaggagt ttgatagcaa agctctcaac gaaacgtttt cgccatgggt tgaggagaag 600 aactggaaag acgttctaat gaggttgagc gctatgaaat ttgcgttaca agctgtcagg 660 gataaaattc ctggggtttt atcagatctg aaaaaggact gtcctttcag tgcttttaag 720 aggtttcctg acaaagagat gtggtcgaaa ttgacgaagg aggctgtcat tgctttagct 780 caaattcagg ctgcttcttc ttttaagagg agggcagatg aaaagaatgc cgtttctggg 840 ttgattacta caacacctgc tcaagcttct actggtaacg cgaacccaag tggttcagca 900 accacagtgg tgagaccacc aaggttggac gactcgtctt tccaagaaga tagcttttct 960 tttggtaagt tcgatgacgc ttctactgcg tatcataaag ctctctccta tttggaaggt 1020 ttaaatttga aaccgttata taggagacag tttgagaaat cgtacaacac taggtgggtt 1080 cctgctgccg ctccggtggc gcctgggccg cgtccgaatc cctaattcta agtttgtcag 1140 atactctttc agagggtcac gtgaaaatcg tgaggtggtg tttaccatat aacataatgt 1200 catatatgtg ggcatttaaa ataatcacat tgctgcgaga tggaggagta taggctttgg 1260 tcaaagaatc cggattactt cttttccgac aatgcaaaac tgttcttact gcatgggcat 1320 cacgatagtc cgtattataa gagcggggaa tacactgttt ctcgttcggt taattgggga 1380 gatcctgaat ttcttatggt aattggaatg tctagacttt taacttttct atcagaaaga 1440 catttatgta tcaatgtgga cgggaattgt tattcgcgga tccaagaggg tctgtattac 1500 tatggaaagt ttgacattta ctcgttgatg gttggaaata gtactcagtg ggatgatttc 1560 gtaatttata gagagcgaat gagagttcac atcgactttc gtaacgtgtt agaacttctt 1620 cagctgactg gcgctgatag aggtcgactg tttcctaggt tgcgagaatt gttagacctc 1680 gaaaaagtcg tttattcgac gtcaaaacta ccggacaaag atattacgct gatgatacaa 1740 aatctcaagg atcagttgtc tgcgacgact ttagagaacg acaatttgaa gaaagagatc 1800 gtcatgctga agagtcgagt cgaagctgca caggcgcaag ctcagactag acatctcgaa 1860 aacgacgatc tgaagaaaca aatcgagtcg ttgaagaaga aaaccgcaga tgtgggaagt 1920 atctctgaag ctattgttca agtaccggtg gtgttgcctg cgaagccgac tcctaaagtt 1980 aagaagtatc ccgatgatta caacaacgag gaactgagtg caatgtcaaa ggtaagcgat 2040 gataatgatt tcgagcactt atcaccaatt gaaaaaagaa tttggggccc taaggatgta 2100 tatcattatg ttaagatgta ttatagattc ccacagagga atttcataga tgaacgcgtt 2160 gttaaagaca aggaaagaga agacggacgc gcaagcggtc tgtagaccag cataaaatga 2220 cgagcgcatc catctggacc ctaagacagg gtgattaccc gaagggttct atgttaattc 2280 gtaggagggt taaaaattct gtcttgactg gaaaaggtgg ttacgtagat ctggacggta 2340 atgtagcggt cggaactgga tggcgatggg aaatcgactt cagtgacctg cgtatgattt 2400 tacttttgat atgtataatt gttgtggccg tggccacctt ggaaaatgtc gtaaacgcgt 2460 tgaagtaaga aatcgagaga tctggaaaca gattcgacga aatcaagttg aaaacacgtc 2520 ttcgacacct aaaaagtctc ataattcgaa gacctctaag aagaaattca aaggggtcag 2580 agagtttggg gcaccaaaaa gatttttaag agatgatgtt ccgttaggaa ttgatctatt 2640 atttgctttt taattttgtt ttaaattgtt atctgtttct gtgtatagac tgtttgagat 2700 tggcgcttgg ccgactcatt gtcttaccat aggggaacgg actttgtttg tgttgttatt 2760 ttatttgtat tttattaaaa ttctcaatga tctgaaaagg cctcgaggct aagagattat 2820 tggggggtga gtaagtactt ttaaagtgat gatggttaca aaggcaaaag gggtaaaacc 2880 cctcgcctac gtaagcgtta ttacg 2905 //