ID AY163842; SV 1; linear; genomic RNA; STD; VRL; 4576 BP. XX AC AY163842; XX DT 10-FEB-2003 (Rel. 74, Created) DT 16-APR-2005 (Rel. 83, Last updated, Version 2) XX DE Cucumber Bulgarian virus RNA polymerase pre-readthrough protein, RNA DE polymerase, coat protein, movement protein, and symptom severity modulator DE genes, complete cds. XX KW . XX OS Cucumber Bulgarian latent virus OC Viruses; Riboviria; Orthornavirae; Kitrinoviricota; Tolucaviricetes; OC Tolivirales; Tombusviridae; Procedovirinae; Tombusvirus. XX RN [1] RP 1-4576 RA Russo M., Kostova D., Lisa V., Marzache C., Rubino L.; RT "Molecular characterization of a tombusvirus isolated from cucumber in RT Bulgaria"; RL Unpublished. XX RN [2] RP 1-4576 RA Russo M.; RT ; RL Submitted (15-OCT-2002) to the INSDC. RL Istituto di Virologia Vegetale Sezione di Bari, Consiglio Nazionale Delle RL Ricerche, Via Amendola 165/A, Bari, BA 70126, Italy XX DR MD5; 3aa1ccea2e9e97214c392f2a2dc87133. DR EuropePMC; PMC1370487; 13130137. DR EuropePMC; PMC516415; 15367615. DR RFAM; RF00171; Tombus_5. DR RFAM; RF00176; Tombus_3_IV. DR RFAM; RF00510; Tombus_IRE. XX FH Key Location/Qualifiers FH FT source 1..4576 FT /organism="Cucumber Bulgarian latent virus" FT /mol_type="genomic RNA" FT /db_xref="taxon:2560401" FT CDS 135..2507 FT /codon_start=1 FT /transl_except=(pos:939..941,aa:Glx) FT /product="RNA polymerase" FT /note="89 kDa" FT /db_xref="GOA:Q80R16" FT /db_xref="InterPro:IPR002166" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR013707" FT /db_xref="UniProtKB/TrEMBL:Q80R16" FT /protein_id="AAO33940.1" FT /translation="MDTIRRLFGKNQQIFVGQHAIGVETGPKIDMFSLICKVVLRYMQT FT GKIEHKVDGLSGFVVELLKTDAAAKWDWFMRRARRTDYVGAVSCLSAIAILPLWCAKRW FT YSRLAVGMLLTPVCVAAAYATLPREKLSTYRLRSEAREHMEDEKEATECLVVEEARQLK FT GKDGEDIITGSRLTRVVAKTGRPRRRPYAAKIAQVARAKVGYLKNTPENRLIYQRVLIE FT IMDKDCVRYCDRDGVLPLAIGCCFVYPEGTEEASQLWGSQESLGVKZGGLVRLPGVVTS FT INRDIPSDVLLPQEVLEVRAGPPLSKNRNLYMVAGCPSQARFLVHNHCLRNLKRGLVER FT VFCVEKEGRLVRTPQPKPGAFASLSPFRKAVCEKVGVSQRLGYDGFLSYYSGAKLRTYS FT RAVESLHITPVCERDSHLTTFVKAEKISTSKGDPAPRVIQPRNPRYNVELGRFLRHLES FT KLMKAVDAVFGETTCIKGYTADEVGAIFRDKWDRFDKPCAIGLDASRFDQHCSVEALRF FT EHGFYRALYPGSKVLDRLLEWQLHNKGKGYVPDGTISYRKEGCRMSGDINTSLGNYLLM FT CSMVFGFMRHCGINEYSLANCGDDCVLIIEKRCLKQVQAKLPGYFLNLGYTMKVEEPVF FT QLEEIEFCQAHPVNFQGGWKMVRNVRTAMSKDSHCVNNINDEQTRRAWSNAQHVGGRAL FT SAGIPVVDKFYSRFKLYDPPRKHQRIDTVTNVHKWRGSGGDYVITPESRASFWQAFKLT FT GDEQIALEDRLDRWDMDLFGREGTDSHEPSILDSAAA" FT CDS 135..941 FT /codon_start=1 FT /product="RNA polymerase pre-readthrough protein" FT /note="30 kDa; required for readthrough of 89 kDa protein" FT /db_xref="GOA:Q80R15" FT /db_xref="InterPro:IPR013707" FT /db_xref="UniProtKB/TrEMBL:Q80R15" FT /protein_id="AAO33939.1" FT /translation="MDTIRRLFGKNQQIFVGQHAIGVETGPKIDMFSLICKVVLRYMQT FT GKIEHKVDGLSGFVVELLKTDAAAKWDWFMRRARRTDYVGAVSCLSAIAILPLWCAKRW FT YSRLAVGMLLTPVCVAAAYATLPREKLSTYRLRSEAREHMEDEKEATECLVVEEARQLK FT GKDGEDIITGSRLTRVVAKTGRPRRRPYAAKIAQVARAKVGYLKNTPENRLIYQRVLIE FT IMDKDCVRYCDRDGVLPLAIGCCFVYPEGTEEASQLWGSQESLGVK" FT CDS 2526..3668 FT /codon_start=1 FT /product="coat protein" FT /note="CP" FT /db_xref="GOA:Q80R14" FT /db_xref="InterPro:IPR000937" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:Q80R14" FT /protein_id="AAO33941.1" FT /translation="MALVLRKAGNIVPYVGPAAKAGATAVYNNRKIIYDGLNWIYAKVS FT KRVKKKNGIMSNVVGASPGSIVAPVATSRQLRASRPKFMRTRGGVNITHREYVTQVNGV FT NGGTFQLNRTFGPGAYRVNPTNAAVFPWLLNIASNFDKYKFTRLSFHYVPMCATTEVGR FT VGLFFDRDSEDSGPFDRSEVANMAHLAETPPWGEVVLQVPCDSIDRFISDSTVTDTKLI FT DLGRFGYVVYGGSTNNAYGDVFVQYTVELREPQPSSNTMEEITGNAGNSVVTTPPSYFR FT LASFDATLAAFTPTTAGTYLVTLILEGTAMTAGNISTSNPSALTITGQSVVVSATKVIY FT VCQVIASTPGHNLNFNFTAASATFWNFFAVRTTRDIIISA" FT CDS 3709..4260 FT /codon_start=1 FT /product="movement protein" FT /note="21 kDa" FT /db_xref="GOA:Q80R13" FT /db_xref="InterPro:IPR005332" FT /db_xref="UniProtKB/TrEMBL:Q80R13" FT /protein_id="AAO33942.1" FT /translation="MDTEYEQVNKPWNELYKEITLGNKLLVNVGMEDMEVPLLPSNFLT FT KARIGMSGGYITVRRIRIKIIPLVSRKAGVSGKLYLRDITDTTGKKLHCTELLDLGREI FT RLTMRHLDFSVSTKSDVPIVFGFEELVSPFLEGRELFSVSLKWQFGLSSQSYSLPQTKW FT KVMYQEDALKQIKTAHRKRT" FT CDS 3741..4247 FT /codon_start=1 FT /product="symptom severity modulator" FT /note="19 kDa" FT /db_xref="GOA:Q80R12" FT /db_xref="InterPro:IPR004905" FT /db_xref="InterPro:IPR036131" FT /db_xref="UniProtKB/TrEMBL:Q80R12" FT /protein_id="AAO33943.1" FT /translation="MERIVQGDHTGKQAVGECWDGRYGSTITPFQLPDESPNRDEWRVH FT HCETNPHKDYPLGFKESWGFGKVVFKRYYRHDWKETSLHRVIRSWSGDTVNYAASRFFG FT VNQVGCTYSIRIRGISVTLSGGSGTLQRLIEMAIRIKLSELQLASDEMEGHVSGGCPEA FT DQNCT" XX SQ Sequence 4576 BP; 1178 A; 947 C; 1261 G; 1190 T; 0 other; agaaattctc cagcctgacc aggtggtgag ttgcggtgtt gtctaccgta gaggatttct 60 ctcgtgcctt gttacgggtt tgaagggcga gcctatcttc ggagggtaaa ttgtaacttt 120 cgccaaacag gactatggat actatcaggc ggcttttcgg gaagaaccag cagatctttg 180 ttggacagca tgcgattggt gtagaaactg gacccaagat tgacatgttc tctctcatat 240 gtaaagtggt cctcaggtat atgcagacag ggaaaataga gcacaaggtc gatggactga 300 gtggattcgt ggttgagtta ctcaagactg atgccgctgc taagtgggat tggtttatga 360 gaagggcgag gagaactgac tacgttggtg cggtcagttg tctttctgcc atagccatcc 420 ttccactctg gtgcgccaag aggtggtact ctcggctggc ggtgggaatg ctgttaacac 480 cagtttgtgt tgcagcagca tacgctaccc tacctaggga aaaactgtct acttatcgcc 540 tgagaagtga ggccagggaa cacatggagg atgagaagga agctactgag tgcttggtgg 600 ttgaggaagc tcgtcaactc aaaggaaagg atggtgagga tattatcact gggagtaggt 660 taactagggt tgtggcaaaa accggacgcc ctagaaggag gccatatgcg gcgaagatag 720 ctcaggttgc tcgtgctaaa gtgggttatc ttaagaacac tcctgagaat aggctcatct 780 atcagagggt acttattgag ataatggata aagattgtgt gaggtattgt gaccgtgatg 840 gtgtcctacc cctcgcaatc ggatgttgtt ttgtataccc tgaaggaaca gaggaggcga 900 gtcagctctg gggctctcaa gagtccctcg gcgtgaaata gggaggccta gtgcgtctcc 960 ctggggtggt gactagcatt aatcgtgata tcccatctga tgtgttgctt ccccaggagg 1020 tgctagaggt tcgtgcagga cctcccctat ctaagaatcg taatttatac atggttgcag 1080 gttgcccatc acaggcacga ttcttagtcc ataatcactg cctgagaaac ctgaaacgtg 1140 gtcttgtgga gagagtcttc tgtgtggaga aagaaggaag actcgttcgc actccacaac 1200 ccaaacctgg ggcctttgct agtctttccc cgttcaggaa agctgtctgt gagaaggtcg 1260 gagtttccca acgcttgggg tatgacggat ttctgtcata ctacagtggg gcgaaattgc 1320 gcacttactc gcgggcggtg gagagtctgc atatcactcc tgtctgtgag cgtgatagtc 1380 atttgactac ttttgtaaag gcagagaaga tatcgactag taagggtgat cctgcaccta 1440 gggttattca gcctcgcaac cctaggtaca atgttgaatt aggtcgtttt ctgcggcatt 1500 tggagagtaa gctcatgaaa gcggttgacg cagtttttgg tgagaccaca tgtatcaagg 1560 ggtacactgc agatgaggtc ggcgctatct tcagggacaa atgggacagg tttgataagc 1620 catgtgccat tggcctagat gcgtcgaggt ttgatcaaca ctgttccgtg gaagccttac 1680 ggtttgaaca tggcttctac cgggcccttt acccgggtag taaggtcctg gaccgactat 1740 tggaatggca actccataat aaggggaagg gatatgtgcc tgatggcacc atctcatatc 1800 gaaaggaggg ttgcagaatg agtggggata taaacacctc tctgggaaat tatttgttaa 1860 tgtgctctat ggtctttggt ttcatgcgac actgtggcat caatgaatat agtctggcaa 1920 actgtggaga tgactgtgtc ctcattattg agaagcggtg tcttaaacag gtgcaggcga 1980 aactacctgg gtatttcctt aacttggggt ataccatgaa ggtagaggag cctgtatttc 2040 aattggaaga gattgaattc tgtcaggcgc atccagtcaa ctttcagggc ggttggaaga 2100 tggtccgaaa tgtaaggacg gcaatgtcta aggattccca ttgtgttaat aacattaacg 2160 atgagcaaac taggcgcgcg tggagtaatg cacaacatgt gggcggtaga gctttgtctg 2220 ctggcatacc agtggtggac aagttctact ctaggttcaa actctatgat ccgcctagga 2280 agcatcagcg aatagacacc gtcacaaatg tccataaatg gaggggatct ggtggtgatt 2340 atgtaatcac accagaaagc agggccagct tctggcaagc ttttaagctt accggggatg 2400 aacagatagc ccttgaggac agattggacc gatgggacat ggatctcttt gggagggagg 2460 gtaccgactc acatgagccg agtatcctcg actccgccgc agcttgacca aacaacattg 2520 aaaacatggc tttagtgctt aggaaagcag ggaatattgt gccttatgtt ggccccgcgg 2580 ccaaagcagg cgcaacagca gtctataata acaggaagat tatatatgat ggcctgaatt 2640 ggatttacgc caaggtttcc aagagggtga agaagaagaa tggaattatg tccaatgtag 2700 taggagcatc acctggatct attgtggccc ctgtggccac ctccaggcag ttgagggcta 2760 gtagacctaa gtttatgcga acacgtggag gtgtcaacat cacccatcgt gagtatgtca 2820 cacaagttaa tggtgtgaat ggtggtactt ttcagttgaa tcggactttt gggccaggtg 2880 cctatcgcgt caaccccacg aacgcggcag tgtttccctg gttgcttaat atagcatcca 2940 atttcgacaa gtataagttt accagattat cattccacta tgttcccatg tgtgcgacca 3000 cggaggttgg tagagttggg ctattctttg atagggactc ggaggatagt ggcccatttg 3060 acagatctga ggtagcaaat atggcacatc ttgctgaaac acctccttgg ggggaggttg 3120 ttttacaggt cccatgtgat agcatcgacc ggtttattag cgatagtacc gtaactgaca 3180 ccaaacttat tgatttgggt cggtttggtt acgtggttta tggggggagt acgaacaatg 3240 catatggtga tgtctttgtg caatacaccg tagagctccg agaaccccaa ccatcctcaa 3300 ataccatgga ggagataaca ggcaatgctg gtaattcggt tgtcactaca ccgcccagct 3360 attttagatt ggcgtccttc gatgcaacgt tggcggcgtt tacacctact acagctggca 3420 cctatcttgt cactctcatc ttggaaggaa ctgcaatgac ggcggggaat atctcgacat 3480 ctaatcctag tgcgttgaca atcaccggac agagtgtggt ggtttccgcc acaaaggtta 3540 tttatgtttg ccaagttatt gcatccacac caggccataa tcttaacttt aatttcactg 3600 ctgcgtcggc tacattctgg aatttctttg ctgtgcgcac cacacgcgat attattatca 3660 gcgcttagtc atgtcttact ttaggggcct cttgaaatag accatttcat ggatactgag 3720 tacgaacaag ttaacaaacc atggaacgaa ttgtacaagg agatcacact gggaaacaag 3780 ctgttggtga atgttgggat ggaagatatg gaagtaccat tactcccttc caacttcctg 3840 acgaaagccc gaatagggat gagtggaggg tacatcactg tgagacgaat ccgcataaag 3900 attatcccct tggtttcaag gaaagctggg gtttcgggaa agttgtattt aagagatatt 3960 acagacacga ctggaaagaa acttcactgc accgagttat tagatcttgg tcgggagata 4020 cggttaacta tgcggcatct cgatttttcg gtgtcaacca agtcggatgt acctatagta 4080 ttcggattcg aggaattagt gtcacccttt ctggagggtc gggaactctt cagcgtctca 4140 ttgaaatggc aattcggatt aagctctcag agttacagct tgcctcagac gaaatggaag 4200 gtcatgtatc aggaggatgc cctgaagcag atcaaaactg cacatagaaa gcgaacttga 4260 cagactctca agcaaggtat gaagttaagg agtggaaccc ggattaattg taacctgtaa 4320 ttattctcgt ggtggtacga cctcaggctg gtcacctggg actgcgtagg acgggaggtg 4380 tcctcttatg ggcgctagtt attggtgaaa cggggagacg ggtggggacg acacggttgt 4440 atatagtcca caacacccac ctgttgcaaa ctctggaaga tagtatctcg cacggttaca 4500 ccccatcctt cgggagggct ttaggggtgt gctggaagca ccaccggaca gccggaacat 4560 tgccgaaagg cagccc 4576 //