ID AY160687; SV 1; linear; genomic RNA; STD; VRL; 3617 BP. XX AC AY160687; XX DT 13-DEC-2002 (Rel. 74, Created) DT 29-MAY-2003 (Rel. 75, Last updated, Version 2) XX DE Rice black streaked dwarf virus segment 4, complete sequence. XX KW . XX OS Rice black streaked dwarf virus OC Viruses; Riboviria; Reoviridae; Spinareovirinae; Fijivirus. XX RN [1] RP 1-3617 RA Wang Z., Fang S., Li D., Yu J.; RT "Complete sequence of segment 4 of rice black-streaked dwarf virus"; RL Unpublished. XX RN [2] RP 1-3617 RA Wang Z., Fang S., Li D., Yu J.; RT ; RL Submitted (08-OCT-2002) to the INSDC. RL State Key Laboratory for Agrobiotechnology, China Agricultural University, RL 2 Yuanmingyuan West Road, Beijing, Beijing 100094, China XX DR MD5; 78b48956ea84ebbb4d3c6d573350c058. XX FH Key Location/Qualifiers FH FT source 1..3617 FT /organism="Rice black streaked dwarf virus" FT /segment="4" FT /mol_type="genomic RNA" FT /db_xref="taxon:10990" FT 5'UTR 1..33 FT CDS 34..3543 FT /codon_start=1 FT /product="S4 protein" FT /db_xref="UniProtKB/TrEMBL:Q8B4I4" FT /protein_id="AAN77725.1" FT /translation="MDPGQVLKYLLSQNYETKIQQLEQWQKQMEAAGYTSEYLNQSSDV FT LKVKSKIEESKRRLFFISANYWQGSLFTKTVAPNNLFLGFSECSGVNKTIFDTKNCDFG FT RFQLSFNCIPKYWILSGVFDELICYEKGKTKVTISKLTNKISIRINDFMYIVPIVNSFS FT FLSGNSDVIIDENCEFDILLRISQSFNEIVIDVYNFSFDDSNLNLDFRPTSIKFEGDAN FT YFSVSSNLIFNSIDGYLNRDNLNMRKYFCYAISMNNLNMINDSLNKWESKQLAKKKNLV FT SSLHQLVLNAMISISSLEKDVARVKSLKMELSYQRNISIHFPNHRIFLNKYPHNLFSPS FT LKTQFVGWNFTYGERDRFISPIVCDVETKLKTNSSIISNAFTSYFQCNSFGNPDNMFLL FT NVTDKNGSTKKVICEAVYSLKYKDFKYVDLKSINKKDNFQNQVYFFGLSEIELYDEHPK FT LQALSVVSENEGDLYHLFYSNCSLVLSFKIISESIEYLGVVSPKFASEFEYNGKTLKLS FT GNLTLSEDFDGVQMKKCLTSEEFVLIEDVKCLFTSFICEGKRSSSKTKFNDKTWPGIRS FT RFHDNDAYLSAIQAHCHSLKLNTPFRSYDNYSDILYSANDNFHYVEANGCFTERKNYLY FT WDVPISNFEMMFDESPCVKLSNQSILTFYVNYRHLYEVVEGKNHPCLLSCKHHVEDYSI FT TQIDSPPILFLPFNRPVDIIYLEQSSGDEVLNEMKIISFEVKEFTAYVLPENLNTTMNI FT VGKLLNYESELELVYQTNNVISDMMNNFDKRLSDLEKFCDFLDKSYIKKSGSSTSLYHL FT LGDIFTFVGEICVLQFPILGFCFILTGIMVDALGKITQEDIFDGISEIAFGGLLLCLGK FT RKPKFTYLEELGFGRRRASSNSYISEMASSVGRRRSYSSYHHYESISDLSPSLSIRDRI FT MNQIRSHNPSVFDLHHNSGIILELKQKQKENYSLLNSSYSRMKRSISNVINDEVINYKL FT SCDNPSSCEVYELCIKTFDYYPILLDDNSFFIIKIQFKIKITSNPVKMKIEDIERSYFH FT TSDASRFRVFDAAKFDVVKHLNKSLLSFTFNEISNYLCVISLLSKTSSIDNMLIENHDK FT LYDTLYISNHKSYMSSDPIHLRQVDFTIFKTMHNYSFSDHAPDDSYFKMISSIVKHPEI FT LRF" FT 3'UTR 3544..3617 XX SQ Sequence 3617 BP; 1204 A; 518 C; 597 G; 1298 T; 0 other; aagttttttt ccatgtcttt aaattgaaca gggatggatc caggacaagt cctcaaatac 60 cttttgtctc agaattatga aaccaaaata caacaactag aacaatggca aaaacagatg 120 gaagcagcag gctacacaag cgaatactta aaccaatctt cggacgtgct taaagttaaa 180 agtaaaattg aagaatcaaa aagacggtta ttttttatca gtgctaatta ctggcaagga 240 agtttattta ctaaaacagt tgctccaaac aatttgtttc ttggatttag tgaatgctca 300 ggcgttaaca agactatttt tgatactaaa aattgtgact tcggacgttt ccagttgagt 360 tttaattgta ttcctaaata ttggatattg tcaggtgttt ttgatgaatt gatttgctat 420 gagaaaggta aaacaaaagt aacaattagc aagctaacaa ataaaatttc aattcgtatt 480 aatgatttta tgtatattgt tccaatcgta aacagttttt cttttttatc aggcaattca 540 gatgtcataa ttgatgaaaa ttgtgaattt gacattttgc taaggatttc tcagtctttt 600 aatgaaatag tgattgatgt ttataatttt agttttgacg attctaatct taatcttgat 660 tttagaccga cctctatcaa atttgaaggt gatgctaatt acttttctgt ttcctctaat 720 ttaatattta atagtattga cggttacttg aatcgagata atttaaatat gagaaaatat 780 ttttgttatg ctataagtat gaataattta aatatgatca atgactcctt aaataaatgg 840 gaatcgaaac aacttgcaaa aaagaaaaat ttagtaagca gcttacatca attggtttta 900 aatgctatga taagtatttc ttctctggaa aaagatgtag caagagtcaa atctttaaaa 960 atggagttaa gttatcaaag aaacatttca attcatttcc caaatcatcg aatctttttg 1020 aataagtacc ctcataattt gttttcccca tctttgaaaa cgcaatttgt cggttggaat 1080 tttacttatg gcgaaagaga tagattcatt tctcctattg tttgtgatgt agagacaaaa 1140 ttaaaaacta attcatctat cattagtaac gcttttactt cttatttcca atgtaatagt 1200 tttgggaatc cggataatat gtttttgctt aacgtaacag acaaaaatgg tagcactaaa 1260 aaagtgatct gtgaagccgt ttattcacta aagtacaaag attttaagta tgttgatttg 1320 aaatcgataa ataagaaaga taattttcag aatcaagtgt attttttcgg tttaagtgaa 1380 attgagttat atgatgaaca tccaaaactt caagcattat ctgtggttag tgagaatgaa 1440 ggtgatcttt atcatttgtt ttacagtaat tgttctctag ttctttcatt taaaattatt 1500 tctgagagta tcgaatattt gggtgttgtg tctcctaaat ttgcaagtga attcgaatat 1560 aatggtaaga ctctaaagct ttctggcaac ttaactttaa gtgaagattt tgatggtgtt 1620 caaatgaaga aatgtttaac atcagaagag tttgttttaa ttgaagacgt taaatgttta 1680 ttcacatctt ttatttgcga aggcaaacgc tcgtcatcta agactaaatt taacgacaaa 1740 acttggcccg gtattagaag taggtttcac gataatgatg cttatttaag tgctattcaa 1800 gcacattgtc attctcttaa attaaatact ccttttcgat cttatgacaa ttatagtgac 1860 attttgtatt ctgctaatga taattttcat tatgttgaag cgaatggttg ttttactgaa 1920 agaaaaaatt atctttattg ggatgttcca atttctaatt ttgaaatgat gtttgatgag 1980 tcaccttgtg taaaattaag taatcaaagt atcttaacct tttacgttaa ttatcgtcat 2040 ctctatgaag tagttgaagg taaaaatcac ccttgtctcc tttcttgtaa gcatcatgtc 2100 gaagattatt ccataaccca gattgattcc cctcctattt tatttttgcc ttttaacaga 2160 cctgtagata taatctactt agaacaatcc tcaggcgatg aagttctcaa tgaaatgaaa 2220 attatatcat tcgaggtcaa agagtttact gcatatgtgt tgcctgaaaa tctaaacact 2280 acaatgaaca ttgtaggcaa gttattaaac tatgagtccg aattggagct agtttaccaa 2340 acgaataatg tcatttctga catgatgaat aatttcgaca agagattatc tgatttggag 2400 aagttttgtg attttctgga taaaagttac attaaaaaat ccggaagctc aacgtcactt 2460 taccatttgc ttggcgacat ttttactttt gttggagaaa tttgtgttct gcaatttcca 2520 atcttaggat tttgttttat tcttacaggg atcatggttg atgcattagg aaaaattact 2580 caggaagata ttttcgacgg tatcagtgaa atagcatttg gtggtttatt gttgtgttta 2640 ggaaagcgta aaccaaagtt tacttattta gaagaattgg gatttggtcg tcgtagagcc 2700 tcttctaatt catacataag tgaaatggca tcttcagttg gcagaagaag aagttattcc 2760 agttatcatc actatgaaag catcagtgat ttaagcccat cattgtctat tagagataga 2820 atcatgaatc aaatacgttc acacaaccct agtgtgtttg atttgcatca taattcagga 2880 ataattttag agttgaagca aaagcaaaaa gagaattatt cacttctcaa ttctagttat 2940 tctagaatga agcgatctat cagtaatgtt ataaatgatg aagtaataaa ttataaactt 3000 tcttgtgaca accccagttc atgcgaagtt tatgagttat gtatcaaaac ttttgattat 3060 tatccaatcc ttttggatga caattctttt ttcataatta aaatacaatt taaaatcaag 3120 atcacatcca atccagttaa aatgaaaatt gaagatattg agagaagtta ttttcatact 3180 tcagatgcct caagatttcg agtctttgat gctgctaaat tcgacgtcgt caaacattta 3240 aataagtctt tattgtcttt tacttttaat gagatatcca attatttatg tgtcatcagt 3300 cttctgtcga aaactagttc gatagacaac atgttaatcg agaatcatga taagttgtac 3360 gatactttgt acatttcaaa tcataaatcc tacatgtcca gtgaccctat tcatttacgt 3420 caagtagatt tcactatatt taaaacaatg cataattact ctttttcaga tcatgctcct 3480 gatgacagtt atttcaagat gatctcaagc attgttaaac accctgaaat tctgagattt 3540 taatgtactt tgggtcgacg cgactggtga aatctacgaa ctgttggaat ttgacataca 3600 tgggaacagc tatcgtc 3617 //