ID AY157993; SV 1; linear; genomic RNA; STD; VRL; 7358 BP. XX AC AY157993; XX DT 25-NOV-2002 (Rel. 73, Created) DT 26-MAR-2004 (Rel. 79, Last updated, Version 4) XX DE Tomato black ring virus isolate MJ segment RNA-1, complete sequence. XX KW . XX OS Tomato black ring virus OC Viruses; Riboviria; Picornavirales; Secoviridae; Comovirinae; Nepovirus. XX RN [1] RP 1-7358 RX DOI; 10.1007/s00705-003-0261-z. RX PUBMED; 15045566. RA Jonczyk M., Le Gall O., Palucha A., Borodynko N., Pospieszny H.; RT "Cloning and sequencing of full-length cDNAs of RNA1 and RNA2 of a Tomato RT black ring virus isolate from Poland"; RL Arch. Virol. 149(4):799-807(2004). XX RN [2] RP 1-7358 RA Jonczyk M., Palucha A., Pospieszny H.; RT ; RL Submitted (02-OCT-2002) to the INSDC. RL Virology and Bacteriology, Institute of Plant Protection, Miczurina 20, RL Poznan 60-318, Poland XX DR MD5; 1f694a70c3643f00c307a80940b71bef. DR EuropePMC; PMC2861173; 20229114. DR EuropePMC; PMC3314827; 22218961. DR EuropePMC; PMC4729743; 26843704. XX FH Key Location/Qualifiers FH FT source 1..7358 FT /organism="Tomato black ring virus" FT /segment="RNA-1" FT /isolate="MJ" FT /mol_type="genomic RNA" FT /db_xref="taxon:12275" FT gene 240..7040 FT /gene="P1" FT CDS 240..7040 FT /codon_start=1 FT /gene="P1" FT /product="polyprotein" FT /db_xref="GOA:Q8B8X3" FT /db_xref="InterPro:IPR000605" FT /db_xref="InterPro:IPR001205" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR014759" FT /db_xref="UniProtKB/Swiss-Prot:Q8B8X3" FT /protein_id="AAN72830.1" FT /translation="MSVTLSPPGDCFTFNHVKYNNSLNKYLFYNNNLDIVLDDFDFYFN FT FYAKKYNVLSSFFSDRVLSALYTPMSVSEAASLALEDFCELALDKLKINPFHQLWEETL FT ANWPVYPGTSLLDFFRTQYEIRREVAEASAEALRLKKATRADAFADEVKFLIKNGVLPH FT LAGDFARKIWSTGKDQKKTRTAFLVKIKKANQLKQQWNSARSLAAARAEVLREFEPSPQ FT QIQKAIEAQLFAEKLGRKYATLTARVRAKRAAARELREKQLYQETVDLLNASLLPPMEK FT VEIERKYRKVRPTGANVVHQVVANPLGSLCPYMGLGAKTADVRCQATLMAGKIHAQYPR FT LATAIYAWVIGPAAHFECITPVRNFVKGLTFMVDFFPEEALIHELNEITTEAVCIGASM FT VLDEERAKLEAHAQSANCRANVFMKAMAGVKNMAKCAYTGFKTGCEEAGRSLAEGICSV FT MMRSFRECIAQIKTELGCAIEMVEVMIKKVKDWFYSMLEKLQCGLETLGSYAMYALAIL FT LGCGLTSLLERCIGGQGILTKLFITGVLAAIGLQAAGGFDNLQREMVQLCTALAAGIFD FT IQHAGNGKYKPSWDITAEHAREDARDSNVRSIPIISGVIEALAQFGTGLCSMQSATLIE FT IGKIGAACHSMRMGKEALKEFCATLMYYLGRIADKVTGRETIFFDELSTLVHVDVRGWI FT KRAQSCMRESFHTEIGNQFFRDMVAQLVDEGQKLQIGVNGIPRKISADYSQLIGQIMKD FT LVELHKRTIRAGISEGRRCEPVWIYLFGQRHCGKSNFMSTLDNALAKHFNLPNTTAYRN FT CKDAFYSGYSGQTFFHMDDLSSVKLEPPLEAELINLVSCQEVPLNMADLADKPIYFRSP FT FIISSSNFEDVPAGCGVRDIEAYRARKACLVEMRRKPGVIYDPENPLLASQARFKDPMY FT QTLINGQTEETSWMEMDDVVTEIINISARHRSAQEKLQARYMREKALLDPLALASESFL FT VKEAQKVFLDFDGVELEKAGVPRPEGGHGLYVDGVLYLVNASFEFDEIPIKDGGYQRLW FT DSRMRKKFLPAIQRDEHLNTKSMVVTGFLRSLVNGECAVLSKDTLTASATTAQLSIFKA FT LRLEERVYLRTLQHQLDLYSQDIPENPYCNSAWVKVLGAIGAGRDYLVQNGCGILMIAA FT ALILILVSGWGFWKLFVGLFSGTMSLGAAITGMSAVDIKAQQSSASQEKGYRARNIPIH FT HRYAYARSQAGDGLLPAARLCVAIYQPGGGFVSAMQYKNKSVRMTRHQALRFKEGEQLT FT VIFASTGESQLIRWHKYHMREEHGSEIVTWLAPSLPALSPDLKDLFLEDKEVDLPNHFK FT TIGYVLRVDSTAFHYDTLDTYGAVDKTPLPLKGVVGNELYLHEIPEKIVFHYESRNDDC FT GMIMLCQIRGKMRVVGMLVAGKDKTSWADIMPPNSLAELKSQIDYIPEFGEACDGYFKA FT GYVHKSEAPTLPKKTNMVPVPESLRVPCDVPVKEPAVLTKDDPRCPIGVDPPRAALKKK FT FTQPMMELEQEILDEVATDILETWYDCEDHVLSDISLSVAINGIPADSEEAELENFVMK FT TSPGYPYFKNNRAEKLKGKHAYFEEAEDGSLQLKKGGMAAELHENLVEFTKNEVPELVV FT IECTKDELLPERKIKVGACRLFEIMPLHYNLFLRQKTCAFTQFLQHNRHRLPCQVGTNP FT YSREWGHMLNRLMRPKTNEAINCDYSGFDGLLNPQLIECIARMINRLYALSGESDVQQA FT QRYNMLMALVGRYAFVGQQVYKVNCGLPSGFALTVVVNSVFNEILIRYAYKKLAPAPER FT NRFGSTVCLLVYGDDNLISVSPSIASWFTGEAIRITLAEKKVKITDGSDKDAPTIEAKS FT FWELDFLKRKFLKLDNGIVQAPLDRSAIFSSLYWLTPDKSKFHESQKPSDFQGEVDVIE FT ELLLNVNVALMELYLHNDVAEFQRVRGFYAQRLPLMVSQLRTWAFCEAFHSAQQTGMQK FT YDPAVVLDHMSGVDFKRFMHMSEQGNKAHFYTEMLGVSGPHYKPQEGDFIVSNQPLKPG FT VQGEYVPIVFGEGIGGLPTKKWVGDFGKPSQLKNSKGYLITGLLREQIEAGKRLIFMGP FT APYVANNAALISFGSAHKMLIQKDALAHYRNVIPESTSGLEQYFDAPIPQASVGTFYFG FT DGETYTALCEYKDGKVLQYEGLPTAILNQAAKDRKVPCMVARQWKSKFTVRMACDSNMC FT PHHSATCANFELAFKQCWLSKCKCAGNNVSKWYGTKFS" FT mat_peptide 240..3854 FT /gene="P1" FT /product="NTB" FT mat_peptide 3855..3935 FT /gene="P1" FT /product="VPg" FT mat_peptide 3936..4565 FT /gene="P1" FT /product="Pro" FT mat_peptide 4566..7037 FT /gene="P1" FT /product="Pol" XX SQ Sequence 7358 BP; 1906 A; 1524 C; 1759 G; 2169 T; 0 other; ttgaaaagaa attttcaagt cttcgctgat cgtaaaactt tccctcttct catcgaagtt 60 caggtaacgc ctgacaccct ctttgttacg aaactgtttt ctttctctct cttgatccag 120 cttttctcaa atcctgtaac caatcaggtt atctttgtgg tgtattgaag aaccactatt 180 ggagtgtagg atagcgccta ccatttgaat gtcaggacag cgcctgattt tattttgaca 240 tgtctgttac tctttcccct ccaggggatt gttttacttt taatcatgtt aaatataata 300 atagtctaaa taagtattta ttttataata ataatttaga tatcgtcctt gacgattttg 360 atttttattt taacttttat gcaaaaaaat ataatgtttt gtcttctttc ttttctgaca 420 gagttttgtc ggctttatat acgccgatgt ctgtcagcga ggctgcctcc ctcgctttgg 480 aggatttctg tgagcttgct cttgacaagc tcaaaataaa tcccttccat cagctatggg 540 aggagacttt ggccaactgg ccagtttatc caggaacatc cctcctggac ttcttccgga 600 ctcaatatga gatccgaaga gaggttgctg aggcctctgc tgaagccctt cgtctgaaga 660 aggccacgcg cgctgatgcg tttgctgatg aggtgaaatt cctcatcaaa aatggtgtac 720 ttccacacct tgcgggagat tttgcccgca aaatctggtc tactggaaag gaccagaaga 780 agacaaggac tgccttcctt gttaaaatca aaaaggcaaa tcagctcaag cagcagtgga 840 attccgcaag gagtcttgca gctgctagag ctgaggtcct gagggagttt gaaccctctc 900 cccaacaaat ccaaaaggct attgaagccc aactttttgc tgaaaagctt gggcgaaaat 960 atgccactct taccgctcgg gtgcgagcga agcgggccgc tgcccgagag ctgcgtgaaa 1020 aacagctcta tcaggagact gttgatctcc tgaatgcatc cctgctgcca cccatggaaa 1080 aggtggaaat tgaaaggaag taccgcaagg tgcgtcctac tggggccaat gttgtccatc 1140 aagtggttgc taatccactt ggttctctct gcccatacat gggtttggga gcaaagaccg 1200 ctgatgtgcg gtgccaagcc actttgatgg ctggcaaaat tcacgcccaa tacccccgcc 1260 tggctaccgc tatatatgct tgggttattg gacctgctgc ccattttgag tgtattactc 1320 ctgtgcgaaa ctttgtcaaa ggtttgacct tcatggttga cttttttcct gaggaggcac 1380 tcattcatga gctgaatgag ataaccactg aagctgtctg tattggagct tctatggttc 1440 ttgatgaaga acgggctaag cttgaagccc atgctcagag tgccaactgt cgtgccaatg 1500 tttttatgaa ggcaatggct ggcgttaaga atatggcaaa atgtgcttac actggtttta 1560 aaaccggttg tgaagaggcc ggtaggtctc ttgctgaagg catctgctca gtaatgatgc 1620 ggagttttcg tgagtgcatt gcgcagatca aaactgagct gggctgtgct attgagatgg 1680 ttgaggttat gattaagaaa gttaaggact ggttctattc catgttggaa aaactccaat 1740 gtgggcttga aacccttggt tcttacgcca tgtatgcctt ggccatccta ttaggatgtg 1800 gtttgacctc actgcttgaa cgttgtatag gcggacaagg aatcctgaca aaattgttta 1860 tcacaggagt ccttgctgcc attggtttgc aggccgcagg aggttttgat aacctgcaga 1920 gggagatggt acaactttgt accgctcttg ccgcaggaat ttttgatatc cagcatgcag 1980 gaaatggaaa atacaaacct agttgggata tcactgctga acatgcccga gaggatgcac 2040 gtgattcaaa cgtgcgttcc attcccatca tctctggtgt tattgaagca ctagcgcagt 2100 ttggtactgg gctttgttcc atgcaatctg ccactctcat tgagattggg aagatcgggg 2160 cagcatgtca ttccatgcga atgggcaagg aagccttgaa agagttttgc gccactttaa 2220 tgtattatct tgggcgcatc gctgacaagg tgactggaag agagacaatt ttctttgatg 2280 agttgtctac tcttgtgcat gttgatgttc gtggttggat taagcgcgct caaagttgta 2340 tgcgtgaatc cttccacact gagattggga accagttttt ccgggatatg gttgcccaac 2400 tagtcgatga gggccaaaag ctccaaattg gagtgaatgg catcccaagg aaaatttcgg 2460 ccgattatag tcaacttatt ggtcagatta tgaaagatct tgtggagctc cacaagagga 2520 ctattcgtgc tggaatatct gaaggcagac gctgtgagcc agtttggatt tatctttttg 2580 gacagcgtca ttgtggtaag tcgaacttca tgtcaaccct tgacaatgct cttgccaagc 2640 atttcaactt gcccaacaca accgcatatc gtaattgcaa agatgctttt tattcggggt 2700 atagcggtca gactttcttc catatggatg atttatcatc tgttaaactt gaaccaccat 2760 tggaagcaga gttaatcaat cttgtctcat gccaagaggt accattgaat atggcagatc 2820 ttgcggacaa gccaatctat ttcaggagtc cctttatcat ttcttcaagt aattttgagg 2880 atgttcctgc tggatgtggc gttcgcgata ttgaagccta tcgtgcccgc aaggcatgct 2940 tggtagagat gagacgcaaa ccgggtgtta tctatgaccc ggaaaatcca cttcttgctt 3000 ctcaggcaag atttaaggat cccatgtacc agaccttgat taatggtcag actgaagaaa 3060 cttcctggat ggaaatggat gatgttgtaa ctgaaattat taacatttcg gcgcgacaca 3120 gatccgccca ggagaagtta caagcgcggt atatgcgtga gaaggcactc ctagatcccc 3180 tagcacttgc atctgaaagc tttcttgtaa aggaagcaca aaaggtgttt ctggattttg 3240 atggggtgga attggagaaa gctggtgtgc ccagacctga gggtggtcat ggcttgtatg 3300 ttgatggggt cttatatctt gtgaatgctt cattcgaatt tgatgagatt cccattaaag 3360 atgggggcta ccagcggttg tgggatagca ggatgaggaa gaagttccta cctgccattc 3420 aacgtgatga gcacttgaat acaaaatcca tggttgttac cggatttttg cgttccttgg 3480 tcaatggaga gtgtgcagtt ttgtcaaagg acactctaac ggccagtgct acaacagccc 3540 agctttcaat ctttaaggcc ttgcgattgg aagagcgggt ttatttgcgg accctccagc 3600 atcaactgga tctgtattcc caggatatcc cagagaatcc ctattgcaat tctgcatggg 3660 taaaagttct gggtgctatt ggtgctgggc gtgattattt ggtccagaat ggctgtggaa 3720 tcctgatgat tgcggctgcc cttatcctta tcttagtttc tggatgggga ttctggaaac 3780 tgtttgttgg gctttttagt ggtaccatgt ctcttggtgc tgcaattact gggatgtctg 3840 ctgtggatat caaagcccaa cagagttccg caagccagga aaaaggttat cgggctcgaa 3900 acatcccgat tcatcacaga tatgcttatg ctcgctctca agcaggtgat ggtctcctcc 3960 cagctgcacg tctctgtgtg gcaatttatc aacctggagg aggatttgtt tccgcaatgc 4020 aatacaagaa taaatctgtg cgtatgacga ggcaccaagc attgcgtttt aaagaaggtg 4080 agcaactcac tgttattttt gccagcactg gtgaatcaca actgattcgc tggcataagt 4140 atcatatgag agaggagcac gggtccgaga tagttacttg gctcgctcct agccttcctg 4200 ccctttcccc tgatctaaaa gacttatttt tagaggataa ggaggtggat ttgccaaacc 4260 actttaaaac aattggctat gttttgagag ttgacagcac tgcatttcac tatgatactt 4320 tggatactta tggtgctgtc gacaaaacac ccctaccgtt gaagggggtt gtgggcaatg 4380 aattatacct acatgaaatt ccagagaaga ttgtcttcca ctatgaatct cgcaatgatg 4440 attgtggaat gataatgctt tgccaaatac gcggtaaaat gcgtgttgta ggtatgcttg 4500 ttgctggaaa ggataagacc agctgggctg acattatgcc accaaattcc ttagctgaac 4560 tcaagagcca aattgattat attcctgagt tcggagaggc atgtgatggc tacttcaaag 4620 ctggttatgt ccataagagt gaggctccaa ccctcccaaa gaaaaccaat atggtgccgg 4680 tgcctgaaag tctgcgtgtg ccctgcgatg ttcctgttaa ggaacctgca gtgctcacca 4740 aggatgatcc ccggtgtccc attggcgttg atcccccaag agctgcgctc aaaaagaagt 4800 ttacgcagcc aatgatggag ttggaacaag aaatcctcga tgaggttgcc acggacattc 4860 tagagacgtg gtatgattgt gaggaccatg tcctctcaga tatttccttg agtgttgcca 4920 tcaatggaat ccctgccgat agtgaggaag ctgaattaga aaattttgtt atgaaaacct 4980 cacctggcta cccctacttt aagaataatc gtgctgaaaa gctgaaaggg aaacatgctt 5040 acttcgaaga agctgaggat ggttctttgc aacttaagaa agggggtatg gcagccgaac 5100 tccacgaaaa cctggtggaa ttcacgaaga atgaagttcc ggaattggta gtcattgaat 5160 gtactaaaga tgaattactt ccagaacgga aaatcaaggt tggcgcttgc agactctttg 5220 agataatgcc cctgcattat aatcttttct tgcgccagaa aacctgtgcc tttacgcaat 5280 tcttacagca taataggcac aggctacctt gccaggttgg gacgaatccc tattctcgtg 5340 aatggggtca catgctaaat cgtctcatga ggccaaaaac caatgaagcc atcaactgtg 5400 actacagtgg ttttgatggg cttctgaacc cccaacttat agagtgcatt gctagaatga 5460 ttaatcgatt atatgcactc tcgggggaat ccgacgtcca gcaagcccaa cgctacaaca 5520 tgttgatggc ccttgttggt agatatgcat ttgttgggca acaagtgtat aaggtcaatt 5580 gtggtttgcc ctctggattt gccttgacgg ttgtggtaaa ttcagtgttt aatgagatct 5640 tgatccgtta tgcttacaag aagcttgccc ctgcgcctga acgaaataga tttgggagta 5700 ctgtctgctt attggtatat ggagatgata atctcatttc tgtgtcaccg tccattgcct 5760 cctggtttac tggtgaggcc atccgtatca ctcttgctga aaagaaggtt aagattactg 5820 atgggagtga caaggatgcg cccaccatag aggcaaaatc attttgggag cttgatttct 5880 tgaaacgcaa gtttttgaaa cttgataatg gtattgtcca ggccccactt gatcggtcag 5940 ctattttttc ctccctatat tggctgaccc ccgacaaatc caaattccat gaatcacaga 6000 agccctctga ttttcagggt gaagtagatg tcattgagga acttctcctc aatgtgaatg 6060 tagcccttat ggagctatat ttgcataatg atgtcgcaga atttcaacgt gtacgaggct 6120 tttacgccca gaggttacct ttaatggtgt cccaattacg tacatgggct ttctgtgagg 6180 cattccactc cgcccaacag actggtatgc aaaaatatga cccagcagtg gttcttgacc 6240 atatgtctgg agttgatttt aaacgtttta tgcatatgtc tgagcagggc aataaagccc 6300 atttttatac tgaaatgctt ggtgtctctg gtccccatta caaaccccag gaaggtgact 6360 ttattgtctc caaccagccc ctaaaaccag gggttcaggg tgaatatgtc cccattgttt 6420 ttggggaggg gattggtgga ttgccaacaa agaaatgggt aggagatttt gggaaaccat 6480 cccagcttaa aaattccaag gggtatctca ttactggcct tttaagggaa cagattgagg 6540 caggcaaaag actcatattt atgggtccgg caccttatgt ggctaataat gccgccttaa 6600 tttcattcgg gagtgcacat aagatgctaa ttcaaaagga cgctcttgct cattatagga 6660 atgtaatacc tgagtctact tctggattgg aacaatactt tgacgctcct attccccaag 6720 ctagtgttgg aaccttttat tttggggatg gtgagaccta tactgccctg tgtgaatata 6780 aggacggtaa ggttcttcaa tatgaaggac tgcctaccgc aattttgaat caggcggcaa 6840 aggatagaaa agtgccatgt atggttgcac gacaatggaa aagtaaattt accgtgcgca 6900 tggcttgtga ttctaatatg tgtccccacc attctgcaac ctgtgctaac tttgagcttg 6960 catttaagca atgttggctc agtaagtgca agtgtgctgg aaataatgtt tccaagtggt 7020 atggtactaa attttcttag gtatttctta tagagaatat ccctccctag cgatctggag 7080 taaaaggagc cattcggtgt tgagataacc gatctgaaat aactcaactt tcttctagag 7140 tgtcataaag actctatgcg ttcggtcccg cagcgaaata taggccgctt tgaaattttc 7200 ttttgttttc ctagtttagg tttaatttct gcagggtgtt taatttccgc ttttatgtgg 7260 cgataatcaa ggtttgtcct tttccttggt ttgctatgtt ggacacaaaa agattttctc 7320 tttcttttgt atatgataaa atattttctg caaaaagc 7358 //