ID AY147260; SV 2; linear; genomic RNA; STD; VRL; 5470 BP. XX AC AY147260; XX DT 02-SEP-2003 (Rel. 77, Created) DT 22-DEC-2005 (Rel. 86, Last updated, Version 3) XX DE Sclerotinia sclerotiorum debilitation-associated RNA virus, complete DE genome. XX KW . XX OS Sclerotinia sclerotiorum debilitation-associated RNA virus OC Viruses; Riboviria; Tymovirales; Alphaflexiviridae; Sclerodarnavirus. XX RN [1] RP 1-5470 RX DOI; 10.1099/vir.0.81522-0. RX PUBMED; 16361437. RA Xie J., Wei D., Jiang D., Fu Y., Li G., Ghabrial S., Peng Y.; RT "Characterization of debilitation-associated mycovirus infecting the RT plant-pathogenic fungus Sclerotinia sclerotiorum"; RL J. Gen. Virol. 87(Pt 1):241-249(2006). XX RN [2] RP 1-5470 RA Wei D., Jiang D., Li G., Yi X., Fu Y., Peng Y.; RT ; RL Submitted (03-SEP-2002) to the INSDC. RL Department of Plant Protection, Huazhong Agricultural University, Shizishan RL No.1, Wuhan, Hubei 430070, P. R. China XX RN [3] RC Sequence update by submitter RP 1-5470 RA Xie J., Wei D., Fu Y., Jiang D.; RT ; RL Submitted (03-SEP-2005) to the INSDC. RL Plant Pathology, College of Plant Science and Technology, Huazhong RL Agricultural University, Shizishan 1, Wuhan, Hubei 430070, P. R. China XX DR MD5; 8c5e5c6ca1aa379522a5bbce4087465f. XX CC On Sep 20, 2005 this sequence version replaced gi:34391570. XX FH Key Location/Qualifiers FH FT source 1..5470 FT /organism="Sclerotinia sclerotiorum debilitation-associated FT RNA virus" FT /host="Sclerotinia sclerotiorum hypovirulent strain Ep-1PN" FT /mol_type="genomic RNA" FT /country="China" FT /db_xref="taxon:213034" FT CDS 93..5195 FT /codon_start=1 FT /product="polyprotein" FT /note="RdRp; contains viral methyl transferase, helicase FT and RNA-dependent RNA polymerase (RdRp) domains FT characteristic of replicases" FT /db_xref="GOA:Q6YI57" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/Swiss-Prot:Q6YI57" FT /protein_id="AAN64332.2" FT /translation="MKLRNPKAPIRNDRKAQRSFHKMLSLKAQAKLALTIQDRLELGLL FT SNNFIRKKLQFVDGYCYLKFLRCAERKTAARNLGSDPSLGLMKRKLVPSQYHSWQSNYT FT LLVTKSSKLTFAHVNRALGGQKLAEVPANCCIGSTICPFLSVPGDHSSYLVNQLPYMNG FT YCYLKLIRRTCRFNAVVTLGPWPLATDFFDYIIHRNLNKDLGLFKCNLENTINGSFCHI FT VEADPGSQNCIFPLPQDCRIGGSISEVVKTLGPDKEMIERDAVTEIKKEIAIVRKYNPY FT HHSSKQQSALESYGIGSDPYAVRSHTHAAEKAIENKLLDIVGMNLRRRSVITMLWQKRN FT KAHLMGRSNCKDVYVNTIMEAKDLVRYDQFSFGLPSVATSTAFIGDALHHMTPESVFDL FT FERSPNLMVLHATIVIPPETLLKCRSSNPELYSLRYYDDKFVYIPEGHAGGSYVHEVKN FT SNWLAISHIQRGGKFLTVKRLETLAAHHYFVIVKGKVETDSIRVFQSPSQVELLDIFAD FT RQSNVRCSLDHAFAIKMERYVHSLKRLELADVTAKTRQLLSSEELLQYSPTDLVKIDNY FT FYFLAHTSRFNSSEELIGSGFFESLVSPLKQWFSEICEKFLGKSNFHKTLEALEWKVIN FT YDVKTVIYDMSKPWEKLHWKSENNLLSFDLDSNDNPTSLVDNTDCEASYSESTKFDYEL FT VQVEDDFIDIRIPGIDIPIYDSEYLASEEPVEVEESPIPEVLPEIEDNLSDSMSIDGWM FT SQSLKTFLPEHDDKVLSILEKFGVSKYGQVVGKNLILPITDFKSVQFEKIGQDEFTESL FT QDRGFGFVSYTPDAERVAVAATDLEHGQGVLITSDEAGELFKKAMPMSVYTCVILGAGG FT AGKTTFVEKFVKDNPKSFTVVTPLSVLKKEWQRKGAKNVFTYETALKRSLKKPANEYVI FT LDDFTRFPAGWIELYMSLNTKSKYIVIGDSRQADSHSMSGAFANALVPAIDLFAPLSPF FT YLNWTWRMTRPVANALGHVSWKLPESGKPILSVSSEVPKDCVVLAPSTTLKVGVETVND FT KAFTYTSAQGATFDKVAILIDDNITRVCGDKAVYTALSRSKGEIVFVSTVTGPDTFEKV FT KCTPFLRTFVELVREYELNQPKVREPEEDFVDDVTPVTSQPKVSEEFLIEELNKNSVEK FT FDREIFRADLGHTDAVKEIGRVTEQIPRQQRSDEALNLVTLDKRVHHATVEENLDELAR FT KKALGNILWTNFKEQYYSGLESVMVDQDLLVSCRAEITKTYLSKTEALLKGGQLRQSPD FT FDKFKIADFLKTQWVRKTEKYGLPIKAGQTVTSFMQETVMATGTLSRYMRRMFDKLCTN FT PNVYLHREKTEQDFSTWVKNGWNFSGHATINDCEAFDASQDGAFVEFERLHAEFLGVPR FT ELIDFYVDTKIKSYIWRGTISVMRLSGEGPTYDFNTWANMAFMATKYSIPSVAMTAYSG FT DDFACDQVLSVKPAFKELECRFKLKEKRFLKSQGRGSYADFCGMIITPNGVIKNPRKLY FT LSLKSHDEIGTIDKAIVNYYNDLRTLISLGDNIFSALDATETEFFAGCLNVVHDYILRG FT SNYEGHQNLTLFKKPRTIKWRVERDETRDCLIHMIIQDRKFIRNLLEGVEQTCDNKPNS FT NLIFRGMTNGYQKRAKFNQLLNRQDEYLDKVLHKSAGQNALRRLTATLDDTQDSTVAEQ FT SAV" XX SQ Sequence 5470 BP; 1688 A; 1053 C; 1170 G; 1559 T; 0 other; ctttagtaaa taccaccgcc tcttaataag tctcgaggca ctccccaacc ttttttttca 60 atttctaaag taattttaaa attgaaccga caatgaaact gcgcaatcct aaagcgccca 120 taaggaatga tcgtaaggct caacgatcat tccacaagat gttgagcctc aaagcgcaag 180 ccaagcttgc tctgacgatt caagatcgcc tcgagcttgg tcttctttct aataatttta 240 ttagaaagaa gcttcaattt gtagatggct actgctatct aaaatttctc agatgcgctg 300 agaggaagac tgccgcgcgg aatcttggtt ccgacccatc tctcgggtta atgaagagaa 360 aattggtacc tagtcagtac cactcgtggc aaagcaatta tacgttgctt gtcactaagt 420 cctccaaatt gacgttcgct cacgtcaatc gagcccttgg aggccaaaaa ttagctgagg 480 taccagctaa ttgttgtatc ggtagtacca tctgtccctt tctctcggtc cctggcgacc 540 attcaagtta tttggtaaat caattacctt acatgaatgg ttactgttac ttgaaattga 600 ttcgacgaac ttgtcgattc aatgcggttg ttactcttgg accctggccc ctggcaacag 660 acttctttga ctatattata cataggaact tgaacaaaga tcttggtcta ttcaaatgta 720 atttggagaa taccataaac ggttcctttt gtcatattgt cgaagccgac cctggaagtc 780 agaactgcat ctttccttta ccccaggact gtcgaattgg gggttcaata agtgaagttg 840 tgaaaacgtt gggtcccgac aaagagatga ttgaacgtga cgctgtcacc gaaatcaaaa 900 aggaaattgc gattgtacgt aagtataatc cctaccacca ttcttcaaag caacagagcg 960 ctttggagtc ttatggcatt ggctctgatc cgtacgctgt gcgttctcat actcatgctg 1020 ctgagaaagc gatcgaaaac aaattgttag acatcgttgg tatgaacctg aggagacgta 1080 gcgtgattac aatgctgtgg caaaagagga ataaagctca cctcatgggt agaagtaatt 1140 gtaaagacgt ttacgtcaat actattatgg aagccaaaga tcttgtgcgc tatgatcaat 1200 tctctttcgg tctgccaagt gttgccactt caacggcatt tatcggcgat gcactacatc 1260 acatgacacc agaatcggtt tttgatctct tcgaaagatc gccaaaccta atggtacttc 1320 atgcgacaat agtgatacca ccggaaacgt tgttaaagtg taggtcatca aaccctgaac 1380 tttacagttt aaggtattac gatgataaat ttgtgtacat tcctgaagga cacgcgggag 1440 gttcttatgt acatgaagtt aaaaactcta attggcttgc tatctctcat atccagagag 1500 ggggcaaatt cctgactgtg aaaagattgg agactctcgc cgcccatcac tactttgtga 1560 tagtgaaggg aaaggttgag accgattcca ttcgagtctt tcagtcacca agccaagtag 1620 aattgctgga cattttcgct gaccggcaat ccaatgtaag atgctctctg gatcatgcct 1680 ttgctattaa aatggaaagg tatgtccatt ctttaaagag attggaatta gctgacgtca 1740 cggccaagac aagacaattg ctgagtagcg aagaacttct tcaatactca ccaactgact 1800 tggtcaagat cgacaactac ttttattttc tagcacacac ttccagattc aactcgtcgg 1860 aggagttaat tggaagtggg ttcttcgagt cgctcgtttc accacttaaa caatggttta 1920 gtgaaatatg tgagaaattc cttggaaagt caaattttca caagacactc gaagcgttag 1980 aatggaaggt cattaattac gatgtcaaga ctgtaattta tgatatgagc aaaccttggg 2040 aaaaacttca ttggaaatcg gaaaataatc tgctttcctt tgatcttgac agtaatgata 2100 atccaacttc actggtagac aatactgact gtgaagcttc ttattctgaa tcaaccaaat 2160 ttgattatga gttagtgcaa gtggaagatg actttataga cattcgaatt ccaggcattg 2220 acatcccaat atatgattca gaatatcttg cttcagagga gcctgtcgag gtagaagaat 2280 ctccaattcc tgaagtactt ccggaaattg aagataacct ttccgacagt atgtcaatcg 2340 atggttggat gagtcaaagt ctcaaaactt tcctgcctga gcatgatgac aaagtcctct 2400 ctatcttaga aaaatttggt gtctcaaaat atggtcaagt tgttggtaag aatctgatct 2460 taccaattac agactttaag agtgtccaat ttgaaaagat aggtcaagat gaattcactg 2520 aatctttaca ggatcgtgga tttggatttg tctcgtacac gccagacgcc gagagagtag 2580 ctgtcgcagc gacagactta gagcatggtc aaggagtgct aatcacttct gacgaagccg 2640 gtgagctttt caagaaagcc atgccaatgt ctgtctacac gtgcgttatt cttggtgctg 2700 gtggtgcggg gaaaacaaca tttgtcgaga aatttgttaa ggacaatccg aaatctttca 2760 ctgtcgtcac tcccctctct gtgctaaaga aggagtggca acggaaaggt gccaagaacg 2820 tctttactta tgaaacggct ctaaagcgta gtcttaagaa acccgctaat gagtacgtca 2880 tcctcgatga tttcacccgt tttcccgccg gatggattga gttgtacatg agcttaaaca 2940 ctaagtctaa gtatattgtg ataggagata gtcgacaagc ggatagtcat tcaatgagtg 3000 gagcttttgc taatgcatta gtcccagcca ttgatctatt cgccccgttg agcccatttt 3060 atttaaattg gacttggcgc atgactcgac ctgttgctaa tgctctaggc catgtgtcct 3120 ggaagttacc ggaatcagga aaaccaattc tcagtgtttc gtctgaggtg cctaaagact 3180 gtgtagtctt ggcaccgtcg acaacattga aagttggagt tgaaacagta aatgataaag 3240 catttacata cacgagtgct caaggtgcta cttttgataa agttgctatc ttgattgatg 3300 ataatatcac tcgtgtgtgt ggcgataaag cagtttacac tgccttaagt cgttcaaaag 3360 gcgaaattgt ttttgtttct actgtcactg ggccggatac tttcgaaaaa gtgaagtgta 3420 ctcctttttt gagaactttt gtggaactgg ttcgtgagta tgaactaaat cagcctaaag 3480 ttagagagcc tgaggaagac tttgttgatg acgtgacacc ggtcaccagt cagcctaaag 3540 tttccgaaga atttttaatt gaggaattga ataaaaattc tgtcgaaaag tttgacagag 3600 aaatattcag agctgatttg ggacacactg acgcagtcaa ggaaataggt agagttacag 3660 aacaaatacc ccgtcaacag aggagtgatg aggctctaaa tctagtcaca ctggataaga 3720 gagtccatca tgcaactgtt gaagagaatt tggacgaact cgctcggaaa aaggccttag 3780 gaaatattct ttggactaat tttaaagagc aatactattc cggactcgaa tcagtaatgg 3840 ttgaccaaga tctcttggtc tcatgccggg ccgaaattac taagacgtat cttagtaaga 3900 ctgaggcgct tcttaaggga ggacaattga gacaatcacc agactttgat aagtttaaga 3960 ttgcagattt ccttaagaca caatgggtga gaaagactga gaagtatgga ttaccgataa 4020 aggcaggtca gactgttacc tcatttatgc aggaaacagt catggcaact ggtactttaa 4080 gtagatatat gcgaaggatg tttgacaaat tatgtacaaa ccctaacgtg tatctgcatc 4140 gggaaaagac tgaacaggat ttctcaactt gggttaagaa tggttggaac ttcagtggtc 4200 acgcaactat taacgactgc gaagcttttg atgcttcaca agatggtgct tttgttgaat 4260 ttgagcgttt acatgctgaa ttccttggag taccacgaga gttaatagac ttttacgttg 4320 acacaaagat aaaatcatat atttggagag ggacaatttc agtcatgaga ctatcgggtg 4380 aaggccccac ttatgacttt aatacttggg ctaacatggc tttcatggct accaagtatt 4440 ccattcctag tgtagcaatg actgcttact ccggtgatga ttttgcttgt gaccaagtgc 4500 tgtcagttaa acctgctttt aaagagcttg aatgcagatt caaacttaag gaaaagaggt 4560 ttctgaaatc acagggtcgt ggttcctatg cagatttttg cgggatgata ataacgccaa 4620 atggtgtcat taaaaaccca aggaaattat atttgagtct aaagagtcat gatgaaattg 4680 gcactattga taaggcaata gtcaattatt ataatgacct tcgaacttta atttctttgg 4740 gtgacaatat cttctccgcg cttgacgcga ccgagactga gttttttgcc ggttgtctga 4800 acgttgttca tgattacata ctaaggggta gtaattatga aggccatcag aatttgactc 4860 tattcaagaa accacgaacc attaagtgga gagtggaacg agatgaaact agggactgtt 4920 taatccatat gattattcaa gaccgaaaat tcatccgcaa tctattggaa ggagtcgaac 4980 agacatgtga caataaaccc aattctaacc tcattttccg tggaatgaca aatggttatc 5040 aaaaacgagc caagtttaac caattgttaa accgccaaga tgagtattta gacaaggtct 5100 tgcacaaatc tgcaggtcaa aatgcccttc gtcgcttaac tgcaacatta gacgacaccc 5160 aagattcgac tgtcgctgaa caatcagcag tgtgattaag actagacgtt aatcaaaacc 5220 agcaattgag agtaagctgt ataaactcta gctagaagca ttgacaggta agctttataa 5280 acctatgtcc aatattgtcc aagattaaat atactttcat tacttggata ttctaaatta 5340 tgcaatcgtg agtcggaaag actatcgttt tcccaaccaa caatcgtagg attgaaggtt 5400 tactttcttt tataatggga aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa 5460 aaaaaaaaaa 5470 //