ID AY144568; SV 1; linear; genomic RNA; STD; VRL; 4501 BP. XX AC AY144568; XX DT 13-DEC-2002 (Rel. 74, Created) DT 29-MAY-2003 (Rel. 75, Last updated, Version 2) XX DE Rice black streaked dwarf virus segment 1, complete sequence. XX KW . XX OS Rice black streaked dwarf virus OC Viruses; Riboviria; Reoviridae; Spinareovirinae; Fijivirus. XX RN [1] RP 1-4501 RA Wang Z., Fang S., Yu J.; RT "Complete sequence of rice black streaked dwarf virus genome"; RL Unpublished. XX RN [2] RP 1-4501 RA Wang Z., Fang S., Yu J.; RT ; RL Submitted (26-AUG-2002) to the INSDC. RL State Key Laboratory for Agrobiotechnology, China Agricultural University, RL 2 Yuanmingyuan West Road, Beijing, Beijing 100094, China XX DR MD5; 979875cf86870b3faa18de3e6bad9136. DR EuropePMC; PMC368758; 14694120. DR EuropePMC; PMC3766826; 24058362. XX FH Key Location/Qualifiers FH FT source 1..4501 FT /organism="Rice black streaked dwarf virus" FT /segment="1" FT /mol_type="genomic RNA" FT /db_xref="taxon:10990" FT 5'UTR 1..35 FT CDS 36..4430 FT /codon_start=1 FT /product="169 kD protein" FT /db_xref="UniProtKB/TrEMBL:Q8B4V7" FT /protein_id="AAN77721.1" FT /translation="MVERKFSRSAEICLKKFESIQQFRQKRQQQEASTDKSHSQNEKTK FT SPGPRTSDSKKDSSTRQNENSFKCSPNFQQAKDEYIQLLHSKDVALDLIIEKAEDIRNV FT FIGELPLTQEVIENNLNDVAVVLNNASDLIFKLFQSDNGILQECVVPVNVIQKDIFPVL FT HPSEIFDYNGFGIDETNNLAISPTIRYLPNWNVQKIRSTIDLLKNDSTVVKARNLASDF FT GLISNTLKRRLLIGIDRMFNKLSIQHRFGTFESQIFSCFLMKQLLTEEQCYVNLPNCVR FT KSKFQKRGIDTVCWQYLRQILLHYNCFPFYHHTHNARFGVLDSTKISIHTDLPVSCILL FT SVLHGLLNGIVSEMLCDLNSDTALIYAKHLMNCSQQSTYQRQLDFKDDFRSWPKLCYDK FT IGYVLAVLYSSDMKPLEQRIEYIDSEFWIDEKEKDTLELSVSKLPEYMKKFVVDSINNC FT VKLGNEVKSKMSSNQNILLSRDLANEEVISARLLASKNTEFLRWLTMTSTIVSNFGIYN FT KTSLLLEYEKSVGTKQDVMVSKPDCKISIVTEQGMSIPLINDWSKVPILNEMSELFDQN FT WKSDLINEFENIDDFEKRFVTFLTNKSGGQKSEEPTLSKELKGISNARVIAFALNRNDY FT HDEIKFIKMLMAYGKCAIRFQIDRRARVIVIVPNAIQSSELFLLLGFNALKINKKHNEK FT IAVGKQIGNLLDARVQMCNTGDVSSVKNSGDMKGMDAHTIPNLTLFLRNKMIEVLFELD FT PSKNCSRFFFSEDKEYTLKEKHPQFEEIYNRKLRGVVIHAAKCLFYMFSMNMYLDDHFF FT ADSQAVSDQTFQTGFFATSAQHTLFLSLFLLNLERKFFSVLDNRLVSVMHSVMGDDVLE FT VIKNGVKFPEVVRKWLSLRKNDLSKLNYEEELSLSRMYGVFLQQAALLGVYVPYPSRMS FT LFCDERSDTTKRHTLDMIKIIMDVISAKAQRSYGIDNGLSIGYSIWSCHRSSRYIYSNA FT DKIKISKLIEMNKNFGFNFIVSHNVVEQSIRFIYPFVTVMCSPISWPMLTFAMPDVSDS FT NKILTYRSKASTSLNGDGAYMLINQMFFTSNEQHMFQFVDYVKHQSKVVELKLNSNFLD FT WETRHKWGFTFGEHLLRFKRLRHLTESRKNELGLGDIEVMVHNLNKYLDSNRVLMSFNS FT ISVLKSHKIEVPYGLMYVNHNRSKIDQSLTVRTESLEERAFLDSVFLKHILDYNVIPKD FT LEVLKTHALCAVKLRIYGDFDYSCERDGVIEPSQDAQFNILLPFLPGYHLNSAYGKLFS FT YSTLPTVHDRDISGTLGEITGSLGASFDVDAAIEFGAHVYNVNPSLVDAAGTAIGIPQG FT LLNHYKNLVNAFVMNNFNLKYHSIFLNVKYFGLNGSLKHFSQYGDYSSRLVRFDSINKL FT DRYHNVFVHDFIFAYIHELNGRRVYLDYSIHSLLLVMSRGSIKYFTSHLSQLFNPMLTL FT EFD" FT 3'UTR 4431..4501 XX SQ Sequence 4501 BP; 1498 A; 645 C; 801 G; 1557 T; 0 other; aagttttttt gccgacctac gtatctcaca gacagatggt ggaacgaaag ttcagtagat 60 ctgcagaaat ttgcttaaag aaatttgaat caatccaaca atttagacaa aagagacaac 120 aacaagaagc aagcacagat aaatcacatt ctcaaaacga aaaaactaaa tcacccggcc 180 cccgtacttc cgacagtaaa aaagattctt caacacgaca aaatgaaaat tcattcaagt 240 gtagcccaaa ttttcaacaa gccaaagatg aatatattca attattacat tccaaagatg 300 ttgcgctgga tttaattatt gaaaaagctg aagacataag aaatgttttt attggtgaac 360 ttcctctcac tcaagaagtg atagaaaata accttaatga tgttgctgta gtcctgaata 420 atgcaagtga tttaattttt aaattatttc aatcagataa cggaattctt caagagtgtg 480 ttgttccagt taacgtaatc caaaaagata tttttcctgt tttacatcct tctgaaattt 540 ttgattataa tggttttgga atagacgaaa caaacaactt agcaatcagt cctaccattc 600 gatatttacc taattggaat gttcaaaaaa ttcgtagtac cattgatctt ttgaaaaatg 660 atagtacagt tgtaaaagca agaaatttag ctagtgattt cggattgatt agtaatactt 720 tgaaaagaag attgttaatt ggaatagata gaatgtttaa taaattaagc atacaacata 780 gatttggaac gtttgagagt cagattttta gttgcttttt aatgaaacag ttattaacag 840 aagaacaatg ctatgtcaat cttcctaatt gtgttagaaa atcgaaattt cagaaaagag 900 gaatagacac tgtttgctgg caatatttaa gacaaattct tcttcattat aattgttttc 960 ctttttacca ccatacgcac aatgctagat ttggagtttt agacagtacg aaaatttcta 1020 ttcatacaga tttgcctgta tcgtgtattc ttctcagtgt tttacatgga ttattaaatg 1080 gaatagtttc tgaaatgttg tgtgatttaa attctgacac tgctttgata tatgctaaac 1140 atctaatgaa ttgttctcaa caatcaacgt atcaaagaca actcgatttt aaagatgatt 1200 ttcgttcttg gcctaaatta tgttatgata agattggata tgttttagca gtactgtatt 1260 catctgatat gaaaccatta gaacagagaa ttgagtatat tgattctgaa ttttggatag 1320 atgagaaaga gaaggacaca ttagagttga gtgttagtaa attacctgaa tacatgaaaa 1380 agtttgtcgt tgattcaatt aacaattgcg taaagttagg gaatgaggtt aaatctaaaa 1440 tgtcttctaa ccaaaatatt ttattatctc gagatcttgc aaatgaagaa gtgatttcag 1500 cacgtttatt agctagtaaa aacacagagt ttcttaggtg gttaactatg actagtacca 1560 ttgtttctaa cttcggaatc tataataaga cgtcactctt attagagtat gaaaaatctg 1620 taggtacaaa acaagatgtg atggtatcca aacctgattg taaaattagc attgtaactg 1680 aacaaggaat gagtatccct ttaattaacg attggtcgaa agtacccatt ttaaatgaaa 1740 tgtcagaact gtttgatcaa aattggaaat cagatttaat taatgaattc gaaaacatcg 1800 atgattttga aaagagattt gtaacatttc tgactaataa atcaggtgga cagaaaagtg 1860 aagaacctac tctatcgaaa gagttaaaag gcatttccaa cgctagagtt attgcatttg 1920 ctttgaacag aaatgattat catgatgaga tcaaattcat taaaatgtta atggcttatg 1980 gcaagtgtgc tatacgattt caaattgaca ggagagctag ggtaattgtt attgttccga 2040 acgctataca atcaagtgaa ctctttttgt tgttaggttt taatgctctt aaaattaata 2100 aaaagcataa tgaaaaaatt gcagttggga aacaaattgg taatctctta gatgctagag 2160 tgcaaatgtg taatacaggt gatgttagtt cagtaaaaaa ttcaggagat atgaaaggta 2220 tggatgctca taccattcca aaccttactt tatttttaag gaataaaatg attgaagtgc 2280 ttttcgaatt ggatccaagt aaaaactgtt ccagattctt ttttagtgaa gataaggaat 2340 atactttgaa agaaaagcat cctcagtttg aagaaatata caatcgtaaa ttaagaggcg 2400 ttgtcattca cgctgctaaa tgtttgtttt atatgttttc aatgaatatg tatttagatg 2460 atcatttctt tgctgatagc caagctgtgt cagatcaaac atttcaaaca ggattttttg 2520 ctacttcagc tcagcatacg ttgttcttaa gtttgttttt acttaattta gagagaaaat 2580 tcttttcggt tcttgataac aggttagttt cagttatgca ttctgttatg ggagatgatg 2640 ttttggaagt gatcaaaaat ggtgtcaaat ttcctgaagt agttcgcaaa tggttgtccc 2700 tacgtaaaaa tgatttgtca aagttaaatt acgaagaaga gttatcatta tctagaatgt 2760 atggtgtctt tttacaacaa gcagcattgt taggcgtgta tgtaccttat ccttccagaa 2820 tgtcgttatt ttgtgatgaa agatctgata ctacgaagag acatacacta gatatgatta 2880 aaataataat ggatgtgata tcagctaaag ctcaacgatc ttatggtatt gataatggat 2940 tgagtattgg ttacagtatt tggagttgtc atcgaagctc acgctacatt tattctaatg 3000 ctgataaaat taaaatatct aaattgattg aaatgaacaa aaattttggt tttaatttta 3060 tagtgtccca caatgttgtc gaacaatcta ttcgttttat atatcctttt gttactgtca 3120 tgtgttctcc tatttcttgg cctatgttaa ctttcgccat gccagatgtt tccgatagta 3180 ataaaatatt aacttataga agtaaagctt ccacttctct caatggagac ggtgcttaca 3240 tgttgattaa tcagatgttt tttaccagta atgaacaaca tatgtttcaa tttgttgatt 3300 atgtgaaaca tcaatctaaa gtggtagaat taaagttaaa ttccaatttt ttggattggg 3360 agaccagaca caaatggggt ttcacgtttg gagaacattt gttacgtttc aaacgtcttc 3420 gtcatttgac tgaaagcaga aaaaatgagt taggattagg agacatagaa gttatggtac 3480 ataatttgaa caaatattta gatagtaata gagttcttat gagttttaac agtatctcgg 3540 ttctaaaatc acacaaaatt gaagttccat atggattaat gtatgttaat cataatcgtt 3600 ctaaaattga tcaatcttta actgttagaa cagaatcttt ggaagaaaga gcgtttctcg 3660 attcagtttt tctcaaacat atattagatt acaatgttat tcctaaagat ttagaagttt 3720 tgaaaacgca cgcactgtgt gctgtcaaat taaggattta tggtgacttt gattattctt 3780 gtgaacgtga tggagtaatt gaacccagtc aagacgctca gttcaacatt ttacttcctt 3840 ttttacctgg ttatcatctc aacagtgctt atggtaaact attttcatac tccactttgc 3900 ctactgttca cgatagggat atttctggaa ctttgggaga gattactgga tctttaggtg 3960 cttcatttga tgtcgatgct gcaattgaat tcggtgcaca tgtttataat gtaaatccta 4020 gtctagttga tgccgctggc accgctattg gtattcccca aggattgctc aaccactaca 4080 aaaatttagt taatgctttt gtgatgaata attttaactt gaaatatcat tctatctttt 4140 taaatgtgaa atactttggt ctaaatggaa gtttaaaaca tttttctcaa tatggtgatt 4200 actctagccg tttagttcgt ttcgattcaa taaacaaatt agatagatac cataatgtat 4260 tcgtacatga tttcattttt gcttatattc atgaattaaa tggccgtagg gtgtatttag 4320 attatagtat tcatagtctt ttgctcgtta tgtcccgagg ttcaatcaag tactttacct 4380 ctcacctctc acagttattc aatcccatgc ttactctgga gttcgactga taaggtgttt 4440 ccaattctga aactgtgcag ttagcgtgcg ttgagtgtct atggcgggaa cagctgatgt 4500 c 4501 //