ID AY138970; SV 1; linear; genomic RNA; STD; VRL; 5884 BP. XX AC AY138970; XX DT 16-OCT-2002 (Rel. 73, Created) DT 16-APR-2005 (Rel. 83, Last updated, Version 2) XX DE Potato leafroll virus, complete genome. XX KW . XX OS Potato leafroll virus OC Viruses; Riboviria; Luteoviridae; Polerovirus. XX RN [1] RP 1-5884 RA Abdelmaksoud H.M., Gamal El-din A.S., Koustrouny H.F.; RT ; RL Submitted (02-AUG-2002) to the INSDC. RL Plant Virology Research Department, Plant Pathology Research Institute, 9 RL Gamma Str., Giza 12619, Egypt XX DR MD5; 0da1c73959d609744768f084bf6b1167. DR EuropePMC; PMC3784903; 24426276. DR EuropePMC; PMC3950689; 24335283. DR EuropePMC; PMC4422679; 25946037. DR RFAM; RF01079; RF_site3. XX FH Key Location/Qualifiers FH FT source 1..5884 FT /organism="Potato leafroll virus" FT /mol_type="genomic RNA" FT /country="Egypt" FT /db_xref="taxon:12045" FT CDS 70..813 FT /codon_start=1 FT /product="initial protein" FT /db_xref="GOA:Q84835" FT /db_xref="InterPro:IPR006755" FT /db_xref="UniProtKB/TrEMBL:Q84835" FT /protein_id="AAN38827.1" FT /translation="MIVLTQSGTLLFDQRFKLSKFLFVVIATGFPLLLQQASLIYGYNH FT EQIYRICRSFLYVLPLLNCKRGRISTSGLQLPRHLHYECLEWGLLCGTHPAIQIVGPTI FT VIKLDDPTTAAAYRSELLRVSSSSYIQNAAGLSNGWGHDMEAFVRNAICLLELRERSIP FT QSGLRDLMGNYQHLVRSLLDACKVDHFVPLDFQHRSLMLNFARLYNQLDLQGRAKSFRA FT LTGFPVYVPSEDYLEGSFLQKELQE" FT CDS 203..2122 FT /codon_start=1 FT /product="polyprotein" FT /db_xref="GOA:Q84836" FT /db_xref="InterPro:IPR000382" FT /db_xref="InterPro:IPR009003" FT /db_xref="InterPro:IPR018019" FT /db_xref="UniProtKB/TrEMBL:Q84836" FT /protein_id="AAN38826.1" FT /translation="MNRFTAYAALFFMFSLCSTAKEAGFQHPAFNFRGTSTMSALSGDY FT SAAPTPLYKSWALPSSLNLTTQPLPPLTDRSYYELVQALISKMRLDCQTVGDMTWRHLS FT EMLFASWNSVKEVSLKAASVTLWAIINIWFGLYWTLARLITLFLWTFSIEALCLILLGC FT ITSLIYKGALSLSEHLPVFLFMSPLKIIWRAAFSKRNYKNERAVEGYKGFSVPQKPPKS FT AVIELQHENGSHLGYANCIRLYSGENALVTAEHCLEGAFATSLKTGNRIPMSTFFPIFK FT SARNDISILVGPPNWEGLLSVKGAHFITADKIGKGPASFYTLEKGEWMCHSATIDGAHH FT QFVSVLCNTGPGYSGTGFWSSKNLLGVLKGFPLEEECNYNVMSVIPSIPGITSPNYVFE FT STAVKGRVFSDEAVKELEREASEAVKKLARFKSLTGKNWADDYDSDEDYGLEREAATNA FT PAEKTAQTNSAEKTAPSTSAEKTAPTNKPLNGQAAPSAKTNGNSDIPDVATSAPPMDKM FT VEQIITAMVGRINLSEIEEKIVSRVSQKALQKPKQKKRGRRGGKNKQNSSPPTSTQSTS FT GAPKKKAVPQASGSAGTSPATTTPAPEAKPSGGKNSAKFIPSWRRKQQDSAGQKPDLKL FT NSKA" FT CDS <1540..3390 FT /codon_start=1 FT /product="putative RNA polymerase" FT /db_xref="GOA:Q8BA02" FT /db_xref="InterPro:IPR001795" FT /db_xref="InterPro:IPR007094" FT /db_xref="UniProtKB/TrEMBL:Q8BA02" FT /protein_id="AAN38828.1" FT /translation="GLRSGERGCNKCARRENCSNKLSREDCSINFSRENCSNKQAFKWA FT SGTVRQNKRQLRHPRRRYKRTTNGQNGRTDHHSYGGENQSLGDRGEDSEQGVSESPAEA FT QTKEARKAWREEQAKQFTSYFNAIYKWGAQEEGCPPGFRKCGHIPGYYHPRTRGETQWG FT QKLCQVHPELAEKTTGFGWPKAGSEAELQSLNLQAARWLQRAESATIPGAEARKRVIEK FT TVEAYRNCVTNAPLCSLKSKLDWAGFQQDIREAVQSLELDAGVGIPYIAYGLPTHRGWV FT EDHKLLPVLTQLTFDRLQKMSEASFEDMSAEELVQEGLCDPIRLFVKGEPHKQSKLDEG FT RYRLIMSVSLVDQLVARVLFQNQNKREISLWRSVPSKPGFGLSTDTQTAEFLECLQKVS FT GAPSVEELCANHKEYTRPTDCSGFDWSVAYWMLEDDMEVRNRLTFNNTQLTKRLRAAWL FT KCIGNSVLCLSDGTLLAQTVPGVQKSGSYNTSSSNSRIRVMAAYHCGADWAMAMGDDAL FT EAPNSDLEEYKTLGFKVEVGRELEFCSHIFRNPTLAVPVNTNKMLYKLIHGYNPECGNP FT EVIQNYLAAVFSVLQELRHDRELVAKLHQWLVPSATTKEH" FT CDS 3588..5741 FT /codon_start=1 FT /transl_except=(pos:4212..4214,aa:OTHER) FT /product="readthrough protein" FT /db_xref="GOA:Q8BA01" FT /db_xref="InterPro:IPR001517" FT /db_xref="InterPro:IPR002929" FT /db_xref="UniProtKB/TrEMBL:Q8BA01" FT /protein_id="AAN38829.1" FT /translation="MSTVVVKGNVNGGVQQPRRRRRQSLRRRANRVQPVVMVTAPGQPR FT RRRRRRGGNRRSRRTGVPRGRGSSETFVFTKDNLMGNSQGSFTFGPSLSDCPAFKDGIL FT KAYHEYKITSILLQFVSEASSTSSGSIAYELDPHCKVSSLQSYVNKFQITKGGAKTYQA FT RMINGVEWHDSSEDQCRILWKGNGKSSDTAGSFRVTIRVALQNPKXVDSGSEPGPSPQP FT TPTPTPQKHERFIAYVGIPMLTIQARENDDQIILGSLGSQRMKYIEDENQNYTNVSSEY FT YSQSSMQAVPMYYFNVPKGQWSVDISCEGYQPTSSTSDPNRGRSDGVIAYSNADSDYWN FT VGEADGVKISKLRNDNTYRQGHPELEINSCHFREGQLLERDATISFHVEAPTDGRFFLV FT GPAIQKTAKYNYTISYGDWTDRDMELGLITVVLDEHLEGTGSANRVRRPPREGHTYMAS FT PREPEGKPVGNKPRDETPIQTQERQPDQTPSDDVSDAGSVNNSGSTESLQLEFGVNSDS FT TYDATVDGTDWPRIPPPRHPPEPRVSGNSRTVIDFSPKADLLENWDAEHFDPGYSKEDV FT AAATIIAHGSIQDGRSMLEKREESVKNKTSSWKPPLSKAVSPAIAKLRSIRKSQPLEGG FT TLKKDATDGVSSIGSGSLTGGTLKRKVTIEERLLQTLTTEQRLWYENLKKTNPPAAIQW FT LYEYQPPPQVDRNIAEKPFQGRK" FT CDS 3613..4083 FT /codon_start=1 FT /product="putative movement protein" FT /db_xref="InterPro:IPR001964" FT /db_xref="UniProtKB/TrEMBL:Q84839" FT /protein_id="AAN38830.1" FT /translation="MSMVVYNNQEGEEGNPFAGALTEFSRWLWSRPLGNPGVEDAEEEA FT IAAQEELEFPEDEAQARHSCLQRTTSWATPKEVSPSGRVYQTVRHSRMEYSRPTMSIRS FT QASYFSSSARPLPPPPVPSLMSWTPIAKYHPSSPTSTSSKLRRAAPKLIKRG" XX SQ Sequence 5884 BP; 1641 A; 1485 C; 1430 G; 1328 T; 0 other; caaaagaata ccaggggaaa ttgcagcttt agcgcataaa ctctacactc attgcaaacg 60 ttatagcata tgattgtatt gacccagtct ggaaccttgc tttttgacca aagatttaaa 120 ctctcaaagt ttctcttcgt tgtcattgca acaggctttc ctcttctcct gcagcaagcg 180 agcttaattt acggctataa tcatgaacag atttaccgca tatgccgctc ttttctttat 240 gttctccctt tgctcaactg caaaagaggc aggatttcaa catccggcct tcaacttccg 300 aggcacctcc actatgagtg ccttgagtgg ggattactct gcggcaccca ccccgctata 360 caaatcgtgg gccctaccat cgtcattaaa cttgacgacc caaccactgc cgccgcttac 420 agatcggagc tactacgagt tagttcaagc tcttatatcc aaaatgcggc tggattgtca 480 aacggttggg gacatgacat ggaggcattt gtcagaaatg ctatttgcct cctggaactc 540 cgtgaaagaa gtatccctca aagcggcctc cgtgacctta tgggcaatta tcaacatttg 600 gttcggtctc tattggacgc ttgcaaggtt gatcactttg ttcctctgga ctttcagcat 660 agaagcctta tgcttaattt tgctcggttg tataaccagc ttgatctaca agggcgcgct 720 aagtctttca gagcacttac cggttttcct gtttatgtcc cctctgaaga ttatttggag 780 ggcagctttc tccaaaagga attacaagaa tgagagggct gtggaaggat acaaagggtt 840 ttcggtccca cagaaaccgc caaagtctgc cgtaattgaa ctacaacatg aaaacggcag 900 ccatctcggg tacgcgaact gcattcgctt gtacagtgga gagaacgcct tggtgacagc 960 tgaacactgt ctagaaggcg ccttcgcaac gtcgttgaaa actggaaaca ggattccgat 1020 gtcgactttc tttcccattt tcaaaagtgc ccgtaatgat atctccatac tagtaggtcc 1080 acccaactgg gaaggtctac tatcagtcaa aggagctcat ttcattacag ctgacaaaat 1140 cggcaaaggt cctgcctctt tctacactct tgagaaaggg gagtggatgt gccatagtgc 1200 caccatagat ggagcccatc accagttcgt gtctgtttta tgcaacactg gacccggata 1260 ttccggaaca gggttttggt cttcaaagaa tctgcttggt gtgcttaaag gcttcccact 1320 ggaagaggag tgtaactaca atgttatgtc tgttataccc tcgatcccag gaatcacttc 1380 cccaaattat gtgtttgagt cgaccgccgt aaaaggccgc gtcttctcgg atgaagctgt 1440 gaaagagcta gagcgggaag catccgaagc cgtcaagaag cttgccagat ttaaatcact 1500 taccggcaag aactgggctg atgattatga ctccgatgag gattacggtc tggagagaga 1560 ggctgcaaca aatgcgcccg cagagaaaac tgctcaaaca aactcagcag agaagactgc 1620 tccatcaact tcagcagaga aaactgctcc aacaaacaag cctttaaatg ggcaagcggc 1680 accgtccgcc aaaacaaacg gcaactccga catccccgac gtcgctacaa gcgcaccacc 1740 aatggacaaa atggtcgaac agatcatcac agctatggtg gggagaatca atctctcgga 1800 gatagaggag aagatagtga gcagggtgtc tcagaaagcc ctgcagaagc ccaaacaaaa 1860 gaagcgcgga aggcgtggag ggaagaacaa gcaaaacagt tcacctccta cttcaacgca 1920 atctacaagt ggggcgccca agaagaaggc tgtcccccag gcttcaggaa gtgcgggcac 1980 atccccggct actaccaccc ccgcaccaga ggcgaaaccc agtgggggca aaaactctgc 2040 caagttcatc ccgagctggc ggagaaaaca acaggattcg gctggccaaa agccggatct 2100 gaagctgaac tccaaagcct gaatctacag gctgccaggt ggctccaacg cgcggagtcg 2160 gccactatcc ctggcgcaga agcaagaaag cgcgtgattg agaaaacagt ggaggcatac 2220 agaaattgtg taactaacgc cccactgtgc tcccttaaat ccaaactgga ttgggctggc 2280 tttcaacaag atatccgtga agcagtccag tcccttgagc tagacgctgg tgtaggcatt 2340 ccctatatcg cgtatggcct ccccacacac cgaggatggg ttgaggacca taagcttctc 2400 ccagtgctca ctcagctgac ctttgaccga ctacagaaga tgtcggaggc cagctttgag 2460 gatatgagcg cagaagagct ggttcaagaa gggctctgtg atcctatcag actatttgtc 2520 aaaggagagc cccacaaaca gagcaaactc gatgaaggcc gctaccgcct catcatgtct 2580 gtttccttgg tggatcaact ggtagcccgg gttctgttcc aaaatcagaa caaaagggaa 2640 atttccctgt ggaggtctgt gccttccaaa cccggttttg gcctttcaac tgacactcaa 2700 actgctgaat tcttggagtg tcttcaaaag gtgtctggag cgccatctgt ggaagaattg 2760 tgtgcaaatc acaaggagta cacgcgccca accgactgtt ccggtttcga ctggtcagtc 2820 gcgtattgga tgctggagga tgatatggag gtgagaaatc gcctgacatt taataacacc 2880 cagctcacca agcgccttcg ggccgcctgg ttgaagtgca taggaaattc cgtcctgtgc 2940 ctgtccgatg gcactttact tgcccaaact gttcccggtg tgcaaaagag cggaagttac 3000 aatacaagtt cctccaactc tagaatccgg gttatggctg cctatcactg tggcgccgac 3060 tgggcaatgg ccatggggga cgatgctctc gaagccccca actccgacct ggaggagtat 3120 aaaacactag gtttcaaagt cgaggtaggt cgagaactcg aattctgttc acacatcttc 3180 agaaatccga ccctcgccgt tccggtcaac accaacaaaa tgctttacaa gttgatccat 3240 ggttataatc cggaatgtgg caatccagaa gtgattcaaa actatctggc tgcagtattc 3300 tctgtgctgc aggaactccg acacgatcgt gagctcgttg ccaagctcca ccagtggttg 3360 gttccgagtg ccaccacaaa agaacactga aggagctcac taaaactagc caagcatacg 3420 cgagttgcaa gcattggaag ttcaagtctc gttacatcaa ccggacaaaa tagattataa 3480 atttttagcg ggatttgctt taggattctc atccgcaatc ccattttcag tagccggttt 3540 atattttgtt tacctaaaga tttcctccca cgtgcgatca attgttaatg agtacggtcg 3600 tggttaaagg aaatgtcaat ggtggtgtac aacaaccaag aaggcgaaga aggcaatccc 3660 ttcgcaggcg cgctaacaga gttcagccgg tggttatggt cacggcccct gggcaaccca 3720 ggcgtcgaag acgcagaaga ggaggcaatc gccgctcaag aagaactgga gttccccgag 3780 gacgaggctc aagcgagaca ttcgtgttta caaaggacaa cctcatgggc aactcccaag 3840 gaagtttcac cttcgggccg agtctatcag actgtccggc attcaaggat ggaatactca 3900 aggcctacca tgagtataag atcacaagca tcttacttca gttcgtcagc gaggcctctt 3960 ccacctcctc cggttccatc gcttatgagt tggaccccca ttgcaaagta tcatccctcc 4020 agtcctacgt caacaagttc caaattacga agggcggcgc caaaacttat caagcgcgga 4080 tgataaatgg ggtagaatgg cacgattctt ctgaggatca gtgccggata ctgtggaaag 4140 gaaatggaaa atcttcagat accgcaggat ccttcagagt caccatcagg gtggctttgc 4200 aaaaccccaa ataggtagac tccggatcag agcctggtcc aagcccacaa ccaacaccca 4260 ctccaactcc ccagaagcac gagcgattta ttgcttacgt tggcatacct atgctaacca 4320 ttcaggccag ggagaacgac gaccagatca tattgggttc tttagggagc caaaggatga 4380 aatatataga ggacgagaac cagaactaca caaatgttag ttctgagtat tactctcaat 4440 cgagcatgca agccgtccct atgtattact ttaatgtccc gaaagggcaa tggtcagtcg 4500 acatcagctg cgaagggtat caacccacta gcagcacctc ggatccaaac cggggtagga 4560 gtgacggggt gatcgcgtat tcaaacgcgg actccgatta ttggaatgtt ggtgaagcgg 4620 atggtgtcaa aatttcgaag ctacgcaacg ataacaccta ccgccaaggt cacccagaac 4680 ttgaaattaa ctcgtgtcat tttcgcgagg gccaactcct tgaacgggac gctacaatta 4740 gcttccacgt tgaagcgcct actgatgggc gattctttct cgttggtccc gctatccaga 4800 aaaccgcaaa gtataactat actatctcat acggtgactg gacggaccga gacatggaac 4860 tggggctgat caccgtggtg cttgatgaac atttagaagg cactggttcg gctaacagag 4920 tgcggcggcc cccacgggag ggccacacct atatggcctc gccgcgcgaa ccggaaggaa 4980 aaccggttgg aaataaacca agggacgaaa ccccgataca aacgcaggaa agacaacctg 5040 atcaaactcc gtctgacgac gtatccgatg ctggttcggt aaacaacagc ggctcaactg 5100 agtcgctgca attggagttc ggggtaaact cagatagtac ctacgatgct acagtcgatg 5160 gtacagactg gcccagaatt cctccaccaa ggcacccacc tgaacctaga gtttccggca 5220 attcaagaac tgttattgac ttttctccga aagccgatct attggagaat tgggatgccg 5280 aacacttcga ccctggttat tccaaagaag atgtcgctgc tgctactatt atagcgcacg 5340 gcagtattca agatgggcga agtatgttgg agaagagaga ggaaagtgtc aagaacaaaa 5400 cctcctcctg gaagcccccg ttatctaaag cggtgagccc agccatagcc aaattgcgct 5460 cgattcgcaa atcccaaccc ctcgagggag ggacccttaa gaaagacgct actgatggtg 5520 tctcatctat tggcagtggt tctctaacag gtggcacgct taagaggaag gtaactattg 5580 aagagcgttt actgcagacc ttaacaactg aacaaaggct gtggtacgag aatttgaaga 5640 aaactaaccc tccagctgct atccaatggc tgtatgaata tcagccacct ccccaagtag 5700 atagaaacat agctgaaaag ccattccaag ggaggaaatg agtcgactca cgacttaaaa 5760 ctgagtgtcc gccggacatt aagcggaacg aaagccgaaa ggtgattagg ctctcaacgc 5820 ctgctagaga ccgtcgaaag acgcgactgt gtagccaaga tcctcttaca tggttgtgta 5880 gtta 5884 //