Dbfetch
ID AY134494; SV 1; circular; genomic DNA; STD; VRL; 2781 BP. XX AC AY134494; XX DT 19-SEP-2002 (Rel. 73, Created) DT 16-APR-2005 (Rel. 83, Last updated, Version 3) XX DE Tomato yellow leaf curl virus - [Puerto Rico], complete genome. XX KW . XX OS Tomato yellow leaf curl virus - [Puerto Rico] OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2781 RX DOI; 10.1094/PDIS.2001.85.9.1028B. RX AGRICOLA; IND23258196. RA Bird J., Idris A.M., Rogan D., Brown J.K.; RT "Introduction of the exotic Tomato yellow leaf curl virus-Israel in tomato RT to Puerto Rico"; RL Plant Dis. 85(9):1028-1028(2001). XX RN [2] RP 1-2781 RA Bird J., Idris A.M., Rogan D., Brown J.K.; RT ; RL Submitted (22-JUL-2002) to the INSDC. RL Plant Sciences, University of Arizona, Tucson, AZ 85721, USA XX DR MD5; 9a30e3b9068cc16c1324b73510eb9128. DR EuropePMC; PMC2074955; 17827315. DR EuropePMC; PMC2224568; 17977971. XX FH Key Location/Qualifiers FH FT source 1..2781 FT /organism="Tomato yellow leaf curl virus - [Puerto Rico]" FT /isolate="Puerto Rico" FT /mol_type="genomic DNA" FT /db_xref="taxon:270149" FT gene 148..498 FT /gene="V2" FT CDS 148..498 FT /codon_start=1 FT /gene="V2" FT /product="pre-coat protein" FT /db_xref="GOA:Q773Q0" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:Q773Q0" FT /protein_id="AAN08520.1" FT /translation="MWDPLLNEFPESVHGFRCMLAIKYLQSVEETYEPNTLGHDLIRDL FT ISVVRARDYVEATRRYNHFHARLEGSPKAELRQPIQQPCCCPHCPRHKQATIMDVQAHV FT PKAQNIQNVSKP" FT gene 308..1084 FT /gene="V1" FT CDS 308..1084 FT /codon_start=1 FT /gene="V1" FT /product="coat protein" FT /db_xref="GOA:Q8BA64" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:Q8BA64" FT /protein_id="AAN08521.1" FT /translation="MLKRPGDIIISTPVSKVRRRLNFDSPYSNRAAVPIVQGTNKRRSW FT TYRPMYRKPRIYRMYRSPDVPRGCEGPCKVQSYEQRDDIKHTGVVRCVSDVTRGSGITH FT RVGKRFCVKSIYFLGKVWMDENIKKQNHTNQVMFFLVRDRRPYGSSPMDFGQVFNMFDN FT EPSTATVKNDLRDRFQVMRKFHATVIGGPSGMKEQALVKRFFKINSHVTYNHQEAAKYE FT NHTENALLLYMACTHASNPVYATMKIRIYFYDSISN" FT gene complement(1081..1485) FT /gene="C3" FT CDS complement(1081..1485) FT /codon_start=1 FT /gene="C3" FT /product="ReN" FT /db_xref="GOA:Q8BA63" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:Q8BA63" FT /protein_id="AAN08524.1" FT /translation="MDSRTGELITAPQAENGVFIWEINNPLYFKITDHSQRPFLMNHDI FT ISIQIRFNHNIRKVMGIHKCFLNFRIWTTLQPQTGHFLRVFRYEVLKYLDSLGVISINN FT VIRAVDHVLYDVLENTINVTETHDIKYKFY" FT gene complement(1226..1633) FT /gene="C2" FT CDS complement(1226..1633) FT /codon_start=1 FT /gene="C2" FT /product="TrAp" FT /db_xref="GOA:Q8BA62" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:Q8BA62" FT /protein_id="AAN08523.1" FT /translation="MQPSSPSTSHCSQVSIKVQHKIAKKKPIRRKRVDLDCGCSYYLHL FT NCNNHGFTHRGTHHCSSGREWRFYLGDKQSPLFQDNRPQPKAISNEPRHHFHSDKIQPQ FT HQEGNGDSQMFSQLPNLDDITASDWSFLKSI" FT gene complement(1542..2615) FT /gene="C1" FT CDS complement(1542..2615) FT /codon_start=1 FT /gene="C1" FT /product="Rep" FT /db_xref="GOA:Q8BA61" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:Q8BA61" FT /protein_id="AAN08522.1" FT /translation="MPRLFKIYAKNYFLTYPNCSLSKEEALSQLKNIETPTNKKYIKVC FT REFHENGEPHLHVLIQFEGKYQCKNQRFFDLVSPNRSAHFHPNIQAAKSSTDVKTYVEK FT DGDFIDFGVFQIDGRSARGGQQSANDAYAEALNSGSKSEALNILKEKAPKDYILQFHNL FT SSNLDRIFSPPLEVYVSPFLSSSFNQVPDELEEWVAENVVSSAARPWRPISIVIEGNSR FT TGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDWQS FT NTKYGKPIQIKGGIPTIFLCNPGPTSSYREYLDEEKNISLKNWALKNATFVTLYEPLFA FT SINQGPTQDSQEETNKA" FT gene complement(2171..2464) FT /gene="C4" FT CDS complement(2171..2464) FT /codon_start=1 FT /gene="C4" FT /product="C4 protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:Q8BA60" FT /protein_id="AAN08525.1" FT /translation="MGNHISMCLSNSKANTNVRTNDSSTWYPQTGQHISIQTFRQLRAQ FT QMLRPTWRKTETSLILEFSKSMADQLEEVSNLPTTHMPKHSIQAVNPRPSIY" XX SQ Sequence 2781 BP; 762 A; 528 C; 600 G; 891 T; 0 other; accggatggc cgcgcctttt ccttttatat ggtccccacg aggattacac agacgtcact 60 gtcaaccaat caaattgcat catcaaacgt tatataaggg ttcatttgtc tttatatact 120 tggtccccaa gtattttgtc ttgcaatatg tgggacccac ttctaaatga atttcctgaa 180 tctgttcacg gatttcgttg tatgttagct attaaatatt tgcagtccgt tgaggaaact 240 tacgagccca atacattggg ccacgattta attagggatc ttatatctgt tgtaagagcc 300 cgtgactatg ttgaagcgac caggcgatat aatcatttcc acgcccgtct cgaaggttcg 360 ccgaaggctg aacttcgaca gcccatacag caaccgtgct gctgtcccca ttgtccaagg 420 cacaaacaag cgacgatcat ggacgtacag gcccatgtac cgaaagccca gaatatacag 480 aatgtatcga agccctgatg ttccccgtgg atgtgaaggc ccatgtaaag tccagtctta 540 tgagcagcgg gatgatatta agcacactgg tgttgttcgt tgtgttagtg atgttactcg 600 tggatctgga attactcata gagtcggtaa aaggttctgt gttaaatcga tatatttttt 660 aggtaaagtc tggatggatg aaaatatcaa gaagcagaat cacactaatc aggtcatgtt 720 ctttttggtc cgtgatagaa ggccctatgg aagcagtcca atggattttg gacaggtttt 780 taatatgttc gataatgagc ccagtaccgc aactgtgaag aatgatttgc gtgataggtt 840 tcaagtgatg aggaaatttc atgctacagt tattggtggg ccctctggaa tgaaggaaca 900 ggcattagtt aagagatttt ttaaaattaa cagtcatgta acttataatc atcaggaggc 960 tgccaagtac gagaaccata ctgaaaacgc cttgttattg tatatggcat gtacgcatgc 1020 ctctaatcca gtgtatgcaa ctatgaaaat acgcatctat ttctatgatt caatatcaaa 1080 ttaataaaat ttatatttta tatcatgagt ttctgttaca tttattgtgt tttcaagtac 1140 atcatacaat acatgatcca ctgctctgat tacattgtta atggaaatta caccaagact 1200 atctaaatac ttaagaactt catatctaaa tactcttaag aaatgaccag tctgaggctg 1260 taatgtcgtc caaattcgga agttgagaaa acatttgtga atccccatta ccttcctgat 1320 gttgtggttg aatcttatct gaatggaaat gatgtcgtgg ttcattagaa atggcctttg 1380 gctgtggtct gttatcttga aatagagggg attgtttatc tcccagataa aaacgccatt 1440 ctctgcctga ggagcagtga tgagttcccc tgtgcgtgaa tccatgatta ttgcagttga 1500 ggtggaggta gtatgagcag ccacagtcta ggtctacacg cttacgcctt attggtttct 1560 tcttggctat cttgtgttgg accttgattg atacttgcga acagtggctc gtagagggtg 1620 acgaaggttg cattcttgag agcccaattt ttcaaggata tgtttttttc ttcgtctaga 1680 tattccctat atgaggaggt aggtcctgga ttgcagagga agatagtggg aattccccct 1740 ttaatttgaa tgggcttccc gtactttgtg ttgctttgcc agtccctctg ggcccccatg 1800 aattccttga agtgctttaa ataatgcggg tctacgtcat caatgacgtt gtaccacgca 1860 tcattactgt acacctttgg gcttaggtct agatgtccac ataaataatt atgtgggcct 1920 agagacctgg cccacattgt tttgcctgtt ctgctattac cctcaatgac aatacttatg 1980 ggtctccatg gccgcgcagc ggaagacacg acgttctcgg cgacccactc ttcaagttca 2040 tctggaactt gattaaaaga agaagaaaga aatggagaaa cataaacttc taaaggagga 2100 ctaaaaatcc tatctaaatt tgaacttaaa ttatgaaatt gtaaaatata gtcctttggg 2160 gccttttctt ttaatatatt gagggcctcg gatttactgc ctgaattgag tgcttcggca 2220 tatgcgtcgt tggcagattg ctgacctcct ctagctgatc tgccatcgat ttggaaaact 2280 ccaaaatcaa tgaagtctcc gtctttctcc acgtaggtct taacatctgt tgagctctta 2340 gctgcctgaa tgtttggatg gaaatgtgct gacctgtttg gggataccag gtcgaagaat 2400 cgttggttct tacattggta tttgccttcg aattggataa gcacatggag atgtggttcc 2460 ccattctcgt ggaattctct gcaaactttg atgtattttt tatttgttgg ggtttctata 2520 ttttttaatt gggaaagtgc ttcctcttta gagagagaac aattgggata tgttaggaaa 2580 taatttttgg catatatttt aaataaacga ggcatgttga aatgaatcgg tgtccctcaa 2640 agctctatgg caatcggtgt atcggtgtct tacttatacc tggataccta atggctattt 2700 ggtaatttca taaatgttca ttgcaattca aaattcaaaa ttcaaaaatc aaatcattaa 2760 agcggtcatc cgtataatat t 2781 //