ID AY129248; SV 1; linear; genomic RNA; STD; VRL; 3439 BP. XX AC AY129248; XX DT 26-SEP-2002 (Rel. 73, Created) DT 29-MAY-2003 (Rel. 75, Last updated, Version 2) XX DE Machupo virus strain Carvallo segment S, complete sequence. XX KW . XX OS Mammarenavirus machupoense OC Viruses; Riboviria; Orthornavirae; Negarnaviricota; Polyploviricotina; OC Ellioviricetes; Bunyavirales; Arenaviridae; Mammarenavirus. XX RN [1] RP 1-3439 RX DOI; 10.1016/S0006-291X(02)02053-3. RX PUBMED; 12207889. RA Charrel R., Feldmann H., Fulhorst C., Khelifa R., Chesse R., RA Lamballerie X.; RT "Phylogeny of New World arenaviruses based on the complete coding sequences RT of the small genomic segment identified an evolutionary lineage produced by RT intrasegmental recombination"; RL Biochem. Biophys. Res. Commun. 296(5):1118-1124(2002). XX RN [2] RP 1-3439 RA Charrel R.N., Feldmann H., Khelifa R., de Lamballerie X.; RT ; RL Submitted (05-JUL-2002) to the INSDC. RL Unite des Virus Emergents, Universite de la Mediterranee, 27 Blvd Jean RL Moulin, Marseille 13005, France XX DR MD5; d1c88c43271743d0e2786ac3f1175849. DR EuropePMC; PMC1472124; 16698999. DR EuropePMC; PMC1524727; 16737539. DR EuropePMC; PMC1563716; 16840359. DR EuropePMC; PMC1866146; 17267481. DR EuropePMC; PMC2270610; 17997467. DR EuropePMC; PMC2743526; 17397892. DR EuropePMC; PMC3210867; 21982818. DR EuropePMC; PMC3309595; 22377271. DR EuropePMC; PMC4111098; 24161346. DR EuropePMC; PMC516395; 15367645. XX FH Key Location/Qualifiers FH FT source 1..3439 FT /organism="Mammarenavirus machupoense" FT /segment="S" FT /strain="Carvallo" FT /mol_type="genomic RNA" FT /db_xref="taxon:3052317" FT CDS 89..1579 FT /codon_start=1 FT /product="glycoprotein precursor" FT /db_xref="GOA:Q8AZ57" FT /db_xref="InterPro:IPR001535" FT /db_xref="PDB:3KAS" FT /db_xref="PDB:5W1M" FT /db_xref="UniProtKB/TrEMBL:Q8AZ57" FT /protein_id="AAN05425.1" FT /translation="MGQLISFFQEIPVFLQEALNIALVAVSLIAVIKGIINLYKSGLFQ FT FIFFLLLAGRSCSDGTFKIGLHTEFQSVTLTMQRLLANHSNELPSLCMLNNSFYYMRGG FT VNTFLIRVSDISVLMKEYDVSIYEPEDLGNCLNKSDSSWAIHWFSNALGHDWLMDPPML FT CRNKTKKEGSNIQFNISKADDARVYGKKIRNGMRHLFRGFHDPCEEGKVCYLTINQCGD FT PSSFDYCGVNHLSKCQFDHVNTLHFLVRSKTHLNFERSLKAFFSWSLTDSSGKDMPGGY FT CLEEWMLIAAKMKCFGNTAVAKCNQNHDSEFCDMLRLFDYNKNAIKTLNDESKKEINLL FT SQTVNALISDNLLMKNKIKELMSIPYCNYTKFWYVNHTLTGQHTLPRCWLIRNGSYLNT FT SEFRNDWILESDHLISEMLSKEYAERQGKTPITLVDICFWSTIFFTASLFLHLVGIPTH FT RHLKGEACPLPHKLDSFGGCRCGKYPRLKKPTIWHKRH" FT CDS complement(1670..3364) FT /codon_start=1 FT /product="nucleocapsid protein" FT /db_xref="GOA:Q8AZ68" FT /db_xref="InterPro:IPR000229" FT /db_xref="InterPro:IPR012337" FT /db_xref="InterPro:IPR035083" FT /db_xref="InterPro:IPR035084" FT /db_xref="InterPro:IPR038115" FT /db_xref="UniProtKB/TrEMBL:Q8AZ68" FT /protein_id="AAN05426.1" FT /translation="MAHSKEIPSFRWTQSLRRGLSQFTHTVKTDVLKDAKLIADSIDFN FT QVSQVQRALRKNKRGEEDLNKLRDLNKEVDRLMSMKSIQKNTIFKIGDLGRDELMELAS FT DLEKLKNKIKRTESGPQGLYMGNLSQLQLTKRSEILKTLGFQQQRGAGNGVVRIWDVSD FT PSKLNNQFGSMPALTIACMTVQGGETMNSVVQALTSLGLLYTVKYPNLNDLDKLTLEHE FT CLQIVTKDESSINISGYNFSLSAAVKAGASILDGGNMLETIRVTPDNFSSLIKSTLQVK FT RKEGMFIDEKPGNRNPYENLLYKLCLSGDGWPYIGSRSQILGRSWDNTSVDLTKKPQVG FT PRQPEKNGQNLRLANLTEMQEAVIKEAVKKLDPTNTLWLDIEGPPTDPVELALYQPANK FT HYIHCFRKPHDEKGFKNGSRHSHGILMQDIEDAMPGVLSYVIGLLPQDMVITTQGSDDI FT RKLLDIHGRKDLKLVDVKLTSDQARLYDQQIWEKFGHLCKHHNGVVVNKKKREKDSPFK FT LSSGEPHCALLDCIMYQSVMDGKMVDEEPVALLPLSLLFLPKAAFAL" XX SQ Sequence 3439 BP; 917 A; 781 C; 711 G; 1030 T; 0 other; cgcacatgtg atcctaggcg attcttgatc gcgcttatta gctaaccaat ttaatttggt 60 gttgaagtgt tgacacgctc tctaacacat ggggcagctt atcagcttct ttcaggagat 120 tcctgttttt ctacaggaag ctctgaacat cgctttagtg gctgttagtc tcatagctgt 180 catcaaaggc atcattaacc tttacaaaag tggtctcttc cagttcatct tctttctcct 240 cctagcaggg aggtcctgct cggatggcac attcaaaata ggcctacaca ctgagttcca 300 gtcagtcacc cttaccatgc agagactttt agctaaccat tcaaatgagc tcccatctct 360 ctgcatgctt aacaatagtt tttattatat gaggggaggt gtgaacacct tcctgattcg 420 tgtttctgat atttcagtcc tcatgaagga gtatgatgta tcaatctatg aaccagaaga 480 ccttggaaat tgtcttaaca agtctgactc aagctgggct attcattggt tctcaaatgc 540 tttgggacat gactggctta tggatcctcc aatgctatgt agaaacaaga caaagaagga 600 gggatctaac attcaattca acatcagcaa agctgatgat gccagagtgt atggaaagaa 660 gataagaaat ggtatgaggc atctcttcag gggcttccat gacccgtgtg aggaagggaa 720 agtgtgctac ctgaccatca atcagtgtgg tgaccccagt tcctttgact actgtggcgt 780 gaatcatctt tccaaatgtc agtttgacca tgtgaacacc cttcatttcc ttgtgagaag 840 taagacacat ctcaactttg agaggtcttt gaaagcattt ttctcatggt ctctgacaga 900 ctcctcagga aaggacatgc caggaggtta ttgtctagag gaatggatgt tgatagcagc 960 caaaatgaaa tgtttcggaa acactgctgt tgctaaatgt aatcaaaatc atgactcaga 1020 gttctgtgat atgctgaggc tattcgacta taacaagaat gcaataaaga ccctcaatga 1080 tgaatcaaag aaagaaatca atcttctaag ccagacagtg aatgccttaa tctcagataa 1140 tttgttaatg aagaataaaa ttaaagagct aatgagcatc ccttattgta attacacaaa 1200 gttttggtat gtcaatcata ccctgacagg gcagcacact cttccaagat gttggttgat 1260 aaggaatgga agttatctta acacttctga attcaggaat gactggattt tagagagtga 1320 tcacctcatc tcagagatgt taagtaagga atatgctgaa aggcaaggca aaaccccaat 1380 cacattagtt gatatttgtt tctggagcac aattttcttc acagcatcat tgttccttca 1440 tctagtcgga atacccaccc atcgacacct caaaggcgaa gcctgtcctt tgcctcataa 1500 gctggacagc ttcggaggtt gtagatgtgg caaatatccc agattgaaga aacccaccat 1560 ctggcacaaa agacattaaa cacagccaag acccctgccg acccgggccc agcccgggtc 1620 ggcggggccc cccagtccgc ggctctgccg cggactgggg aggcactgct tacagtgcaa 1680 aggctgcctt gggtagaaat agaaggctga gaggtaaaag tgccactggt tcttcatcta 1740 ccattttgcc atccatcact gattgataca tgatacaatc caacagagca cagtgaggtt 1800 caccagaact caatttgaat ggagagtctt tttctctctt tttcttgttg acaacaactc 1860 cattatgatg tttgcaaaga tgtccaaact tctcccaaat ttgctgatca tagagtcttg 1920 cttgatcaga tgtgagtttc acatctacca gctttaaatc cttccgtcca tgaatgtcta 1980 aaagtttcct tatgtcgtca gaaccttgag ttgtaatcac catatcttgt ggtagtaaac 2040 ctattacata acttaatact cctggcattg catcctcgat gtcttgcatc aagatgccat 2100 gtgaatgtct gctgccattt ttgaagccct tctcatcatg tggctttcta aaacaatgaa 2160 tataatgctt gttggctggc tgatatagtg ccaattccac agggtctgtt ggaggccctt 2220 caatgtcaag ccacagtgta ttagtggggt ctaacttctt tacagcctct ttaatcactg 2280 cttcttgcat ttcagtcagg tttgctagtc ttagattctg accgtttttc tcgggttgtc 2340 tcggtccaac ttgaggtttc tttgttagat caacacttgt gttgtcccaa gatctcccaa 2400 gaatttgtga tctggaacca atgtaaggcc acccgtcacc tgagagacac aatttataca 2460 gaaggttctc ataaggattt cgattcccag gtttctcgtc tataaacatc ccctcttttc 2520 gcttgacttg cagagttgat ttaatcaagc tggagaaatt atcaggagtg accctaattg 2580 tttccagcat gttcccaccg tcaagtattg aggcgccagc tttcacagca gctgacagac 2640 tgaagttata gccagagatg ttgatggagc tctcgtcctt agttacgatc tgcaagcatt 2700 cgtgctctag agttagcttg tcaaggtcat ttaaattcgg atatttaaca gtgtataaca 2760 ggcccagaga tgtcaacgct tggaccacac tattcatcgt ttctccaccc tggacagtca 2820 tacaagcgat tgtgagagct ggcatggaac caaactgatt attcagtttt gatggatctg 2880 agacatccca gattctaacc acaccatttc cagcacctct ctgctgttgg aatcccaggg 2940 tcttcaagat ttctgacctc tttgtcagtt gcagctgtga caaattaccc atgtacagcc 3000 cttggggacc tgactcagtc ctctttatct tgttcttcag tttttccaag tctgatgcaa 3060 gctccatcaa ttcatctctc cccagatctc caatcttgaa tatggtgttt ttctggatgc 3120 ttttcataga catgagccta tccacttctt tgtttaaatc cctcagcttg ttcagatcct 3180 cttcacccct tttgttcttt ctgagagccc tctgcacttg tgaaacctgg ttgaagtcga 3240 tgctgtcagc tatgagcttg gcatctttca acacatctgt tttcacagtg tgggtgaact 3300 gactcaggcc tcttctcagt gactgagtcc accgaaagct gggaatttcc ttggagtgag 3360 ccatagtggc taataaccaa aggatttgaa ataaagctca gtagaagagt tagacacttt 3420 gcctaggatc cactgtgcg 3439 //