ID AY122330; SV 2; linear; genomic RNA; STD; VRL; 3318 BP. XX AC AY122330; XX DT 30-JUL-2002 (Rel. 72, Created) DT 24-MAR-2005 (Rel. 83, Last updated, Version 3) XX DE Cherry rasp leaf virus segment RNA-2, complete sequence. XX KW . XX OS Cherry rasp leaf virus OC Viruses; Riboviria; Picornavirales; Secoviridae; Cheravirus. XX RN [1] RP 1-3318 RX DOI; 10.1007/s00705-002-0833-3. RX PUBMED; 12181681. RA James D., Upton C.; RT "Nucleotide sequence analysis of RNA-2 of a flat apple isolate of Cherry RT rasp leaf virus with regions showing greater identity to animal RT picornaviruses than to related plant viruses"; RL Arch. Virol. 147(8):1631-1641(2002). XX RN [2] RP 1-3318 RA James D., Upton C.; RT ; RL Submitted (14-JUN-2002) to the INSDC. RL Biochemistry and Microbiology, University of Victoria, Petch 150, Victoria, RL BC V8W 3P6, Canada XX RN [3] RC Sequence update by submitter RP 1-3318 RA James D., Upton C.; RT ; RL Submitted (21-MAR-2005) to the INSDC. RL Biochemistry and Microbiology, University of Victoria, Petch 150, Victoria, RL BC V8W 3P6, Canada XX DR MD5; 2cd31b8c0f458bd04307857ae3020ab3. XX CC On Mar 21, 2005 this sequence version replaced gi:22002486. XX FH Key Location/Qualifiers FH FT source 1..3318 FT /organism="Cherry rasp leaf virus" FT /segment="RNA-2" FT /isolate="flat apple" FT /mol_type="genomic RNA" FT /note="CRLV" FT /db_xref="taxon:202566" FT CDS 293..3175 FT /codon_start=1 FT /product="polyprotein" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:Q8JMH5" FT /protein_id="AAM82758.1" FT /translation="MEPDRSQLAPEEVPDSFRVETPAAMLARLRAESAAKKEAARRAAM FT PYNDDLLVGSELTYLVKDDVFGAGRSALKRLFSRPSAEESVVVSHPLSVKEQVVRYQRP FT RTDHDPYVAVYTPLPHITEEQARKLMEKGFSNSSNVALDMAVQSHVGQGTPLLAMCGIM FT DSRTDDPNEALQVAGYFDLGRDRCDLISLPLINFPLNKEDFDDYMRGLYLCTMFHNVRG FT FQNNKALCSYSAVGFDQHKETPRCIRSRVKESWEDILARNNENEFSRVQSGQNLLNAIE FT KERNEAIPDVGAHQFACVPPSKGTPQTSLLTSDGVIKRPNFTLPRSASTRFTMPLNMRY FT SGRNSVDTARRSLAANSSDGSTSLRQDPNLLEGQGPSIDFTKIIFPTVIERNFSNPRAE FT IVNTIQQLYGDTVETLSVNPPESYSAERLIGKVFSTVYGSFGATDLVEGKVLMSVKIVD FT LLSSANLGALLLAEVLGGNLTMRVTALVTLNKYTSFALKLVYDELAQLAPDATNFGVAS FT VLPGAIFPSQEKSFSFDFSIFSMGSYTNFRENEGFGRISLVALSSPNLPDQMPDSANIT FT LEFSVVNVDTSVYNLGQGQCLDLDRFPVHVTSKSKSLSGGAKRAQAEFSLNLYELGPHF FT NRFQAICGHLAGYSGDLIVDWMISASALTNGRCYMVPVYDQNTFSEVSEEKLRQCKYVS FT KELSLNRSGTVHIPFSSSFGSYTKNKHPKLLFVFPGGISGPSGETIHVNIQVRDILNFS FT GLGHQLLKPILAAEGPDPFSFHLFCLHCGTLKTESLNKGGMWCVPVSPVNLAAMKHGTG FT SSLVFNESFVSKTHNWLHYMASCTAYWRGTLTYELRVTYNSRVNAVANLVAFYTSQVED FT LFGFSDKPVGDTGIASICGDAFSVRISIPFVTPTLWLRTYRNAYDVFTSCNGSLYFHLP FT TSGVKSVQLFVRAESDFSFERFRALKAEYT" FT mat_peptide 293..1414 FT /product="movement protein" FT /inference="non-experimental evidence, no additional FT details recorded" FT mat_peptide 1415..2071 FT /product="Vp25" FT /inference="non-experimental evidence, no additional FT details recorded" FT mat_peptide 2072..2593 FT /product="Vp20" FT /inference="non-experimental evidence, no additional FT details recorded" FT mat_peptide 2594..3172 FT /product="Vp24" FT /inference="non-experimental evidence, no additional FT details recorded" XX SQ Sequence 3318 BP; 781 A; 721 C; 737 G; 1079 T; 0 other; cgttttagag tgcatgaagt tgttgttgtt gttctgtttt gttatcctgt tttgttacca 60 aaatttgttc acagttactt cttttgtttc tctaccgtca aactttctga atcttttgat 120 tcaaattttc ctttgctttc tgttggatta tatccacaga gttttaccgg aagttttatt 180 cttccaaaaa cttgctgcga gtgacgctcg tcttagagct agctctagca ttccctctcc 240 tcctcctttg ccaatcttgg caatttctgt ttttcctctc tctctcccag ccatggaacc 300 tgaccgttcc cagctggcac ctgaagaggt gccagactct tttcgggtgg agacacccgc 360 tgctatgctc gcacgtttgc gagctgagag cgctgccaag aaggaggcag cacgtagggc 420 agcaatgccc tacaatgatg atcttttggt gggctctgag ctcacctact tagtcaaaga 480 tgatgtcttt ggcgctgggc gctctgcgct caagaggctt ttctcccggc cttctgctga 540 ggagagtgtg gtagttagcc accccctttc tgttaaagaa caggtggtgc gctatcagcg 600 accgcggact gaccacgatc cttatgtagc ggtctacacc cccttgcccc acatcactga 660 agagcaagcc cggaaactta tggagaaggg cttctctaac tctagcaacg tggctctgga 720 tatggccgtc caaagccatg ttgggcaagg gacacccctt ttggctatgt gcgggataat 780 ggattctcgt actgatgacc ccaacgaagc tttgcaagtt gcgggttatt ttgacttagg 840 tagagatcgc tgcgatctta tatcccttcc attaatcaat ttccctctaa ataaagagga 900 ttttgatgat tacatgaggg gtctctacct atgcactatg tttcataatg tgcgaggatt 960 tcaaaataac aaggccttgt gcagttattc tgcagttggt tttgatcagc acaaagaaac 1020 accccggtgc atccgctctc gcgtcaaaga gagttgggaa gacattctgg cacggaataa 1080 cgaaaacgag ttctctcgtg ttcaatctgg acagaacctt ctcaatgcca ttgagaaaga 1140 gcgaaatgaa gctatacctg atgttggagc tcatcagttt gcttgtgtgc ctccgtcaaa 1200 gggcactcct caaacgtctc tgttaacatc tgatggtgta atcaagagac ctaactttac 1260 gctcccgcgg agtgctagca cacgttttac aatgccactg aatatgcgtt attcaggacg 1320 aaattcagtg gatactgcta ggcgctcctt agctgctaac tctagtgatg ggtccacttc 1380 cctccgtcaa gatcctaatc ttttggaggg acagggtcca tctatagatt ttactaagat 1440 cattttcccc actgtcatag agagaaattt ctctaaccct agagctgaaa ttgtaaatac 1500 tattcaacag ctctatgggg acacagttga aactttgtca gttaaccccc ctgagtccta 1560 ttcggctgag aggttaattg gcaaagtttt ctccactgtt tatggcagtt ttggggctac 1620 tgaccttgtt gagggaaaag ttttaatgtc tgtaaagata gttgatttac tatcaagtgc 1680 gaatctagga gctttgcttc tagctgaagt tcttgggggt aacttaacta tgcgtgttac 1740 agccctggtc acgctcaata aatatacaag ttttgctctt aagcttgtgt atgatgagct 1800 tgcgcagttg gcacctgatg ctacgaattt tggagtagcc agtgtcctcc ctggggctat 1860 tttcccttcg caagagaagt ctttttcttt cgattttagt attttttcta tgggtagtta 1920 tactaacttt agagaaaatg aaggttttgg tcgaataagt ttggttgcct tgagttcacc 1980 aaatttgccc gaccaaatgc cagattctgc taacattacg ttagagttct ctgtagttaa 2040 tgtagatact agtgtttata atttaggaca agggcagtgt cttgatttgg accgctttcc 2100 tgtacatgta actagtaagt ccaaatctct cagtggtggc gccaagcgtg ctcaagcaga 2160 gttttctcta aatctctatg agcttggtcc acacttcaat agatttcaag caatctgtgg 2220 tcacctcgct ggttattctg gtgatttgat tgtggattgg atgattagtg cttctgctct 2280 aacaaatggg cgctgctaca tggtgcctgt ttatgatcag aacacttttt ctgaagtctc 2340 tgaagaaaaa ctgagacagt gtaaatacgt ctctaaggaa ttgtcactta ataggagtgg 2400 cactgtacat attccttttt cttctagttt tggttcttat acgaagaata aacatcccaa 2460 actcttgttt gtttttcctg gtggaatttc agggccatca ggagagacaa tacatgtgaa 2520 tattcaggtc cgggatattt taaatttttc tgggttgggg caccagctgc ttaaacccat 2580 cctggcagct gagggccctg accctttttc ctttcatttg ttttgtttac attgcgggac 2640 tcttaaaacg gagtctctaa ataaaggtgg aatgtggtgt gtgccagttt ctccagtgaa 2700 ccttgcagcc atgaaacatg gaactggtag ttctctggtc ttcaatgagt cttttgttag 2760 taagactcat aattggctac actacatggc tagttgtaca gcttattggc gagggacatt 2820 gacgtatgag ctacgtgtta catataatag tagagtcaat gctgttgcca atcttgtggc 2880 tttttatacc tctcaagttg aggacctatt tggtttctca gacaaaccag ttggtgacac 2940 tggaatagca tctatttgtg gtgatgcttt ctctgttcgc atttctatac cgtttgttac 3000 acccactttg tggttgagaa cttataggaa tgcatacgat gtgttcacat cctgcaacgg 3060 atctttgtac ttccacctac ccacttcagg ggttaaatcc gttcaactgt ttgtccgtgc 3120 tgaatcggac ttttcctttg agagattcag agccctcaaa gctgagtaca cctagtttct 3180 ctctgtttct ttctctagtc tgtaaatact cgttttagct ttcctagtgt aagctcctgt 3240 ttagcaggtc gtgccttcag caagcacacc aaaaagattt gctttttctt gagtctttag 3300 agtcttttgg agggatcc 3318 //