ID AY100482; SV 1; linear; genomic RNA; STD; VRL; 4766 BP. XX AC AY100482; XX DT 16-JUN-2002 (Rel. 72, Created) DT 16-APR-2005 (Rel. 83, Last updated, Version 3) XX DE Pear latent virus 33 kDa RNA polymerase pre-readthrough protein, 92 kDa RNA DE polymerase, coat protein CP, 22 kDa movement protein, and 19 kDa symptom DE severity modulator genes, complete cds. XX KW . XX OS Pear latent virus OC Viruses; Riboviria; Tombusviridae; Procedovirinae; Tombusvirus. XX RN [1] RP 1-4766 RA Russo M., Vovlas C., Rubino L., Grieco F., Martelli G.P.; RT "Molecular characterization of a tombusvirus isolated from diseased pear RT trees in southern Italy"; RL J. Plant Pathol. 84:161-166(2002). XX RN [2] RP 1-4766 RA Russo M.; RT ; RL Submitted (30-APR-2002) to the INSDC. RL Istituto di Virologia Vegetale-Sezione di Bari, Consiglio Nazionale Delle RL Ricerche, Via Amendola 165/A, Bari 70126, Italy XX DR MD5; 59e259703e587185a9a9a13046c58fba. DR EuropePMC; PMC1370487; 13130137. DR EuropePMC; PMC516415; 15367615. DR RFAM; RF00171; Tombus_5. DR RFAM; RF00176; Tombus_3_IV. DR RFAM; RF00510; Tombus_IRE. XX FH Key Location/Qualifiers FH FT source 1..4766 FT /organism="Pear latent virus" FT /mol_type="genomic RNA" FT /db_xref="taxon:197112" FT CDS 167..2623 FT /codon_start=1 FT /transl_except=(pos:1055..1057,aa:Glx) FT /product="92 kDa RNA polymerase" FT /db_xref="GOA:Q8JMT5" FT /db_xref="InterPro:IPR002166" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR013707" FT /db_xref="UniProtKB/TrEMBL:Q8JMT5" FT /protein_id="AAM49803.1" FT /translation="MDRLLNFLRPKRELFVGDFAIGVDRRPSVDMFQLVCRLALRYMRT FT GKIECNVDSLQQFVVELLKTDCAAKWEWFMKRRSAGDYAIPLALAALPIAPLLSYTTKV FT RTVSVKAFGNELTFPFRTLRPSLPRKGLLLRLAAGFALAPVCLLAVYATLPREKLSVFR FT LRTEARTHMEDEREATECLVVEPARELKGKDGEDLLTGSRMTKVIASTGRPRRRPYAAK FT VAQVARAKVGYLKNSPENRLIYQRVIIEIMDKDCVRYIDRDVILPLAIGCCFVYPDGVE FT ESAALWGSSESLGVKZGGLVRLPGVVTQTNRDIPSGVLLPQEVLEVRTGPPNAKDRNIF FT MVAGCPSQARFLVHNHCLKNLKRGLVERVFCVEKNGILTRTPQPAKGAFSRLSPFRKAV FT CEKVGVAHRFGYDGFLSYYNGAKLRTYTRAVESLHISPVCERDSHLTTFVKAEKISTSK FT GDPAPRVIQPRNPRYNVELGRYLRHMESKLMKAVDGVFGETTCIKGYTADEVGQIFRDK FT WDKFDRPVAIGLDASRFDQHCSVEALQFEHSFYRAMYPGNKLLSKLLEWQLHNKGKGYV FT PDGTITYRKEGCRMSGDINTSLGNYLLMCAMIYGYMRHLGINEFSLANCGDDCVLIVER FT KHLKRIQGTLPEYFLNLGYTMKVEPPVFQLEEVEFCQAHPVQFEGGWKMVRNVRTAMSK FT DVHCVNNIKDLATRKAWSNAQHHGGIALSAGIPVVEKFYSRFALYEMPKRHQRIDTVTN FT VHKWRGSGGKYSVTPESRASFWQAFGLTGDEQLALEDRLDRWEMDLFGEEGVDAHEPSI FT LDSAVA" FT CDS 167..1057 FT /codon_start=1 FT /product="33 kDa RNA polymerase pre-readthrough protein" FT /db_xref="GOA:Q8JMT4" FT /db_xref="InterPro:IPR013707" FT /db_xref="UniProtKB/TrEMBL:Q8JMT4" FT /protein_id="AAM49802.1" FT /translation="MDRLLNFLRPKRELFVGDFAIGVDRRPSVDMFQLVCRLALRYMRT FT GKIECNVDSLQQFVVELLKTDCAAKWEWFMKRRSAGDYAIPLALAALPIAPLLSYTTKV FT RTVSVKAFGNELTFPFRTLRPSLPRKGLLLRLAAGFALAPVCLLAVYATLPREKLSVFR FT LRTEARTHMEDEREATECLVVEPARELKGKDGEDLLTGSRMTKVIASTGRPRRRPYAAK FT VAQVARAKVGYLKNSPENRLIYQRVIIEIMDKDCVRYIDRDVILPLAIGCCFVYPDGVE FT ESAALWGSSESLGVK" FT CDS 2649..3815 FT /codon_start=1 FT /product="coat protein CP" FT /db_xref="GOA:Q8JMT3" FT /db_xref="InterPro:IPR000937" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:Q8JMT3" FT /protein_id="AAM49804.1" FT /translation="MEIVRRNNNSAIAINKKQLATMAATAAAGALSNYVKNNGAMVVQG FT AVNMGKKAYGAVRNRKNKGNSQAMVHVGGMGGAMMAPVAVSRQLVGSKPKFAGRTAGSV FT TVTHREYLTQVNNSSAFTTNGGIVGNLLQLNPLNGTLFSWLPAIASNFDQYVFNSVVLH FT YVPLCGTNEVGRVAMYWDKDSEDPEPADRVELANFGILKETAPWAEAILRVPTDKMKRY FT CDDSTVVDRKLIDLGQLGISTYGGTGTNPVGDVFVSYSVTLYFPQPTNTLLSTRQLSLT FT GALEASTGPGYINVTRTPTLLTITFRSTGTFLLSGVFRDTGVAVLGVTGGIGINSQTTL FT DVVGVATSFLVNCTVSTLPATLTYGSAGITSVTANCTRATRANTVTLL" FT CDS 3847..4422 FT /codon_start=1 FT /product="22 kDa movement protein" FT /db_xref="GOA:Q8JMT2" FT /db_xref="InterPro:IPR005332" FT /db_xref="UniProtKB/TrEMBL:Q8JMT2" FT /protein_id="AAM49805.1" FT /translation="MDTEYEQVNKPWSELYKEATLGNKLTVNVGMEDVEVPLLPSNFLT FT KVRVSLSGGYITVRRVRIKIIPLVSRKAGVSGKLYLRDISDTTGRKLHCTELLDLGKEI FT RLTMQHLDFSVSARSDVPIVFGFEDLVSPFLEGRELFSVSLRWQFGLSAQCYSLPPAKW FT KVMYQEEALKALKPSKKKASKTDSSRLE" FT CDS 3879..4397 FT /codon_start=1 FT /product="19 kDa symptom severity modulator" FT /db_xref="GOA:Q8JMT1" FT /db_xref="InterPro:IPR004905" FT /db_xref="InterPro:IPR036131" FT /db_xref="UniProtKB/Swiss-Prot:Q8JMT1" FT /protein_id="AAM49806.1" FT /translation="MERAIQGSDAREQAYSERWDGGCGGTITPFKLPDESPSLIEWRLH FT NSEESEDKDNPLGFKESWSFGKVVFKRYLRYDGTEASLHRALGSWERDTVNNAASRFLG FT FGQIGCTYCIRFRGSCLTISGGSRTLQRLIEMAIRTKRTMLQLTPCEVEGNVSRGSPEG FT TEAFKEESE" XX SQ Sequence 4766 BP; 1237 A; 1003 C; 1315 G; 1211 T; 0 other; agaaattcct cagatttctc cctgttgacc aggagttatc ggtgagttgc gctttgtgct 60 ttgcgtaagg gatttctctc gtacaggtac gatctcggac cagctacggg tttgaagggt 120 gagcctattc ttcggaaggg taaattgtaa ctttcaccaa taagcaatgg atagattact 180 gaactttctg agacctaaga gagaactttt cgtaggtgat tttgcgatcg gggttgacag 240 gaggccatcg gtggacatgt tccagttggt gtgcaggttg gctctcagat atatgaggac 300 agggaaaatc gagtgcaatg tggacagtct tcaacagttc gttgttgagt tgttaaagac 360 tgattgcgca gccaaatggg aatggttcat gaaacggcgt tctgccggtg attatgctat 420 cccccttgca ctggctgcac tacccattgc cccgctgttg agttatacca caaaggttag 480 aacggtgagt gtaaaggcgt tcgggaatga attgactttc ccattcagga cccttcgccc 540 aagcttaccc cgtaagggtt tgctccttcg gctggcggcc ggctttgcgt tagcacctgt 600 atgcttgctt gctgtgtacg ctaccctgcc acgggaaaaa ctgtctgtat ttaggctgag 660 aactgaggcc cgcacacata tggaggatga gagggaagca acggaatgtt tggtggtaga 720 gccagctcga gagctcaagg gaaaggacgg ggaggatctc ctcactggta gtagaatgac 780 aaaggtaatt gcgtctacag ggcgccctcg caggagacct tatgcagcga aagttgctca 840 ggttgcaaga gctaaggtgg gttaccttaa gaatagtcct gagaatagat taatctacca 900 gagagtcatc attgagatca tggacaagga ttgcgtcagg tatattgaca gggatgtcat 960 attgcctttg gctattggat gttgttttgt ctacccggac ggagtggaag agtcggcggc 1020 actctggggc tcgagcgagt ccctgggtgt gaaataggga ggcctagtgc gtctacctgg 1080 ggttgtgaca cagaccaatc gagatatccc atctggtgtg ttacttcccc aggaagtgct 1140 agaggttcgt acaggacctc ccaatgctaa ggaccgtaat atatttatgg ttgctggttg 1200 cccatcacag gcacggttct tagtgcataa tcattgcctg aaaaacctta agaggggtct 1260 tgtggaaaga gttttctgtg ttgagaaaaa cggaattctc actcgcactc cacaacctgc 1320 caaaggagcc tttagtcgtc tttccccgtt caggaaagcg gtttgtgaga aggtcggagt 1380 tgcccaccgt tttgggtatg atgggtttct atcatactac aacggtgcga agctgcgtac 1440 ttacacgcga gccgtggaga gtctgcatat ctcccccgtc tgtgagaggg atagtcattt 1500 gactaccttc gttaaggcgg agaagatatc gacgtctaag ggtgacccag cgcctagggt 1560 gatacagcct cgtaacccta ggtacaatgt ggaacttgga agatatctgc ggcatatgga 1620 gtccaaactg atgaaagctg tagatggcgt atttggtgaa acgacatgca ttaagggtta 1680 caccgctgat gaggtggggc agatctttag ggacaagtgg gacaaatttg atcgtccagt 1740 cgctattggt cttgatgcct cacggtttga tcaacactgt tcggttgaag cgttgcaatt 1800 tgagcatagc ttctacaggg ccatgtaccc tggcaacaag ctcttgagca agttgctcga 1860 atggcaactc cacaataaag ggaaaggata tgtgcctgat ggcactatta cctatcgtaa 1920 ggagggttgt cgtatgagtg gggatataaa cacatcactt ggtaattacc tgttaatgtg 1980 tgccatgatt tatggttata tgcgtcattt ggggatcaat gagtttagtc tggcgaactg 2040 tggggatgat tgtgttctca ttgtagaacg caagcatctt aaacggatac aaggcacact 2100 acccgagtat ttcctaaatc tgggttatac tatgaaggtg gaaccccctg tatttcaatt 2160 ggaggaggtt gaattctgcc aggcacaccc agtacagttt gaaggtggtt ggaagatggt 2220 tcggaatgtc cgtaccgcta tgagcaagga tgtacactgt gttaacaata ttaaagatct 2280 ggctacacgc aaggcgtgga gtaatgcaca acaccatggt ggcatagcac ttagtgctgg 2340 catacctgtg gttgagaagt tttactcccg gtttgctttg tatgagatgc caaagagaca 2400 ccaaagaatt gacacagtca caaacgtgca caagtggcgt ggatcgggtg gaaagtatag 2460 tgtgacccct gagtcaaggg caagcttttg gcaagccttt ggtctgacgg gggatgagca 2520 gcttgcttta gaggaccgtc tggatagatg ggagatggac ctatttggag aggagggtgt 2580 tgacgctcat gagcccagca tccttgactc cgccgtggcc tgaccaagtg aacacaagcg 2640 acatagcaat ggaaatcgtt aggagaaaca ataatagtgc aatcgcaatc aacaagaaac 2700 aactggccac tatggcggct actgccgccg ctggggctct gagcaattat gtgaagaaca 2760 atggagcaat ggtcgtacaa ggtgcggtga atatgggcaa gaaggcttat ggagcagtaa 2820 ggaatcgtaa gaataagggt aattcacagg caatggtgca cgtaggtggt atgggcgggg 2880 ctatgatggc ccctgtggca gtatcccggc aacttgtggg cagtaagcca aagttcgcag 2940 gtaggactgc tggatcagtc acagtcaccc accgtgagta cttaacccag gtgaacaact 3000 cctctgcttt tacaaccaat ggagggattg tcgggaattt gttacaactc aacccgctta 3060 atggcacact gttttcgtgg ttaccggcta tcgcgtcgaa cttcgatcag tacgtcttta 3120 acagcgttgt gttacattat gtccccctct gtggcacaaa tgaagtaggg cgtgttgcaa 3180 tgtactggga taaggactct gaggatcctg agcctgcgga tagagtggaa ttagctaatt 3240 tcggtatact taaagagacg gccccatggg ccgaagctat tttgagggtc ccaactgata 3300 agatgaaacg atactgcgat gacagtacag tggttgacag gaagcttatc gacctcggac 3360 agctcggaat atctacatat ggaggaaccg gaactaatcc tgtgggggat gtgtttgtgt 3420 cgtatagcgt tacgctttac ttcccacaac ccacgaatac cctactcagc acgcgacagc 3480 ttagccttac tggcgcccta gaagcatcta ctgggcctgg atatattaac gtaacacgta 3540 caccaacact cttgactata acattcaggt ctaccggaac tttcctgctt tcgggagttt 3600 tccgggacac tggtgttgct gttcttggtg tgacgggggg cataggaatt aatagtcaaa 3660 ccacacttga tgttgttggc gtagccacat catttcttgt gaactgtaca gtgtccacac 3720 tacccgctac actcacatat ggatctgctg ggataacatc tgtcactgcg aattgcacac 3780 gggccacaag ggccaacacc gtaacattgc tatagtcgcc tcggggcctc ttgaacagac 3840 cagttcatgg atactgaata cgaacaagtc aataaaccat ggagcgagct atacaaggaa 3900 gcgacgctag ggaacaagct tacagtgaac gttgggatgg aggatgtgga ggtaccatta 3960 ctcccttcaa acttcctgac gaaagtccga gtctcattga gtggaggcta cataacagtg 4020 aggagagtga ggataaagat aatccccttg gtttcaagga aagctggagt ttcgggaaag 4080 ttgtatttaa gagatatctc agatacgacg ggacggaagc ttcattgcac agagctcttg 4140 gatcttggga aagagatacg gttaacaatg cagcatctag atttctcggt ttcggccaga 4200 tcggatgtac ctattgtatt cggtttcgag gatcttgtct caccatttct ggagggtcgc 4260 gaactcttca gcgtctcatt gagatggcaa ttcggactaa gcgcacaatg ctacagctta 4320 ccccctgcga agtggaaggt aatgtatcaa gaggaagccc tgaaggcact gaagccttca 4380 aagaagaaag cgagtaagac agactcttca cgcttggagt gaagtttggt ggcaactata 4440 caccttagac tactggttac tactgtcagg ttggaaccca cattaattga gctaggtcgg 4500 gccccgtcgt aggattggtc acctacggaa tggggatatg gaaaggatct cgtaccctgt 4560 gagtcaaacg aaagttgtgc ttgggatatg gatctatgcc tagtaggtta tgtggtgtgt 4620 ctctgacttt aattggatgc cagttttcaa caggagtgga agtaactgaa caacactttg 4680 agcacggttg atctcaccct ccgggggggc tatagagatc gctggaaaca ctaccggaca 4740 accggaacat tgcagaaatg cagccc 4766 //