ID   AY090557; SV 1; circular; genomic DNA; STD; VRL; 2625 BP.
XX
AC   AY090557;
XX
DT   18-APR-2002 (Rel. 71, Created)
DT   31-AUG-2025 (Rel. 144, Last updated, Version 9)
XX
DE   Tomato chlorotic mottle virus-Crumple DNA-A, complete sequence.
XX
KW   .
XX
OS   Tomato chlorotic mottle virus
OC   Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Repensiviricetes;
OC   Geplafuvirales; Geminiviridae; Begomovirus;
OC   Begomovirus solanumpallidivariati.
XX
RN   [1]
RP   1-2625
RA   Fontes E.P.B.;
RT   "Molecular cloning of Tomato Crumple Mottle Virus";
RL   Unpublished.
XX
RN   [2]
RP   1-2625
RA   Machado J.J., Alfenas P.C., Mariano A.C., Zerbini F.M., Fontes E.P.B.;
RT   ;
RL   Submitted (19-MAR-2002) to the INSDC.
RL   Bioquimica e Biologia Molecular, Universidade Federal de Vicosa, Av PH
RL   Rolfs s/n, Vicosa, MG 36571.000, Brazil
XX
DR   MD5; 5a6943ec42758d61e8f97a09dac3818e.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..2625
FT                   /organism="Tomato chlorotic mottle virus"
FT                   /segment="DNA-A"
FT                   /mol_type="genomic DNA"
FT                   /geo_loc_name="Brazil"
FT                   /db_xref="taxon:172391"
FT   rep_origin      join(1..30,2500..2625)
FT   gene            complement(96..848)
FT                   /gene="AC5"
FT   CDS             complement(96..848)
FT                   /codon_start=1
FT                   /gene="AC5"
FT                   /product="AC5"
FT                   /note="ORF5"
FT                   /protein_id="AAM12383.1"
FT                   /translation="MILVLSGFLMVIDDMIVDLPEPLDKRLLVACVLSTCDLSIELVHN
FT                   LKTITEIVFHSGGARLVVEHVKHLAKVHRGAIRSTVPHQPKHGTVRVVLQLDVLIHPYL
FT                   TQNIHRLNTETLTHTMCNTVTTGDIGDTHHLTSMGDIVTLFKRLDFTWAFTTPWNIGGS
FT                   INPIYLGLPVHRPVYPVRGLVRPWPNFCSRRTINTPANLNCTRHVAPWGIALRHFELKL
FT                   TTYARLIYSRYAAWALSSCKYLSLSNAS"
FT   gene            198..953
FT                   /gene="AV1"
FT   CDS             198..953
FT                   /codon_start=1
FT                   /gene="AV1"
FT                   /product="coat protein CP"
FT                   /protein_id="AAM12378.1"
FT                   /translation="MPKRDAPWRHMSSTVKISRGVNSSPRAEVGPRSNKASDWVNRPMY
FT                   RKPKIYRIYRTPDVPRGCEGPCKVQSFEQRHDISHTGKVMCVSDVTRGNGITHRVGKRF
FT                   CVKSVYILGKIWMDENIKLKNHTNSAMFWLVRDRRPYGTPMDFGQVFNMFDNEPSTATV
FT                   KNDLRDRFQVMHKFYAKVTGGQYASNEQALVKRFWKVNNHVVYNHQEAGKYENHTENAL
FT                   LLYMACTHASNPVYATLKIRIYFYESITN"
FT   gene            complement(950..1348)
FT                   /gene="AC3"
FT   CDS             complement(950..1348)
FT                   /codon_start=1
FT                   /gene="AC3"
FT                   /product="replication enhancer protein Ren"
FT                   /protein_id="AAM12381.1"
FT                   /translation="MDSRTGELITAHQAENGVYIWEISNPLYFKMYNVEDILYTRTRVY
FT                   HVQIRFNHNLRRVLGLHKAYLNFQIWTTSLRASGMTYLNRFKYLLMLYIDQLGVISVNN
FT                   VIRAVRFATDKQYVNAVLENHSIKFKIY"
FT   gene            complement(1095..1484)
FT                   /gene="AC2"
FT   CDS             complement(1095..1484)
FT                   /codon_start=1
FT                   /gene="AC2"
FT                   /product="transactivator protein Trap"
FT                   /protein_id="AAM12380.1"
FT                   /translation="MHNSSSSTPPSIKVQHRAAKKRAIRRRRIDLQCGCSIFVHIDCAG
FT                   HGFTHRGTHHCTSGREWRVYLGNIKSPLFQDVQRRGHTIHEDQSLPRPNTVQPQLEESI
FT                   GSPQGLSQLPNLDDIPESFWDDIFK"
FT   gene            complement(1426..2484)
FT                   /gene="AC1"
FT   CDS             complement(1426..2484)
FT                   /codon_start=1
FT                   /gene="AC1"
FT                   /product="replication associated protein Rep"
FT                   /protein_id="AAM12379.1"
FT                   /translation="MPPPKHFRVNSKNYFLTYPHCSLSKEEALSQILALNTPTNKLIIR
FT                   VSRELHEDGQPHLHVLIQFEGKYNCKNNKFFDLVSPSRSAHFHPNIQGAKSSSDVKSYV
FT                   EKDGDFVDHGVFQIDGRSARGGQQSANDTYAKVLNAGSVMEALNILREEQPKDFVLQHH
FT                   NIRSNLERIFAKAPEPWVPPFPLSSFTNVPVEMQDWVDDYFGRDAAARPERPISIIIEG
FT                   DSRSGKTMWARALGSHNSLSGHLDFNSKVYSNDVHYNVIDDVAPHYLKLKHWKELIGAQ
FT                   KDWQSNCKYGKPVQIKGGIPCIGALQSLGEGASYKCFLDKDENSALSSWTKHNAQFIFL
FT                   NSPLYQSSTSGC"
FT   gene            complement(2034..2327)
FT                   /gene="AC4"
FT   CDS             complement(2034..2327)
FT                   /codon_start=1
FT                   /gene="AC4"
FT                   /product="AC4"
FT                   /protein_id="AAM12382.1"
FT                   /translation="MGNLISTCSSSSKENTTAKITSSSTSSPQVGQHISIQTYRELRAH
FT                   QMSNHTWKKTETSLIMEFSRSMADQLEEVSNLPTTRTPRFSTQDLSWKHSIY"
XX
SQ   Sequence 2625 BP; 692 A; 549 C; 599 G; 785 T; 0 other;
     accggatggc cgcgcgattt ttttaaggcc cattcagttt gggccgctct tttgggcctt        60
     cacctttaat tttattgaaa gtaaatttgg cccaatcatg atgcatttga caagctaaga       120
     tatttacaac tacttaacgc ccaagctgca taacggctat aaattaaacg tgcatatgtc       180
     gttaacttta attcaaaatg cctaagcgcg atgccccatg gcgccacatg tctagtacag       240
     ttaagattag ccggggtgtt aatagttctc ctcgagcaga agttgggcca cggtctaaca       300
     aggcctctga ctgggtaaac aggcctatgt acaggaagcc caagatatat cggatttata       360
     gaacccccga tgttccaagg ggttgtgaag gcccatgtaa agtccaatcg tttgaacagc       420
     gtcacgatat ctcccatact ggtaaggtga tgtgtgtctc cgatgtcacc cgtggtaacg       480
     gtattacaca tcgtgtgggt aagcgtttct gtgttaagtc tgtgtatatt ctgggtaaga       540
     tatggatgga tgagaacatc aagttgaaga accacacgaa cagtgccatg ttttggttgg       600
     tgagggaccg tagaccgtat ggcaccccta tggactttgg ccaggtgttt aacatgttcg       660
     acaacgagcc tagcaccgcc actgtgaaaa acgatctccg tgatcgtttt caagttatgc       720
     acaagttcta tgctaaggtc acaggtggac aatacgcaag caacgagcag gcgcttgtca       780
     agcggttctg gaaggtcaac aatcatgtcg tctataacca tcaagaagcc ggaaagtacg       840
     agaatcatac ggagaacgcc ctgttattgt atatggcatg tactcatgcc tcaaaccccg       900
     tgtatgcaac tttaaaaatt cggatctatt tttatgaatc gataacaaat taataaattt       960
     tgaattttat tgaatgattc tcgagtacag catttacata ttgtttgtct gttgcgaatc      1020
     gaacagctct aattacatta ttaactgaaa taacgcctag ctgatcaatg tacaacataa      1080
     gtaaatattt aaatctattt aaatatgtca tcccagaagc tctcagggat gtcgtccaga      1140
     tttggaagtt gagataagcc ttgtggagac ccaatactct cctcaagttg tggttgaacc      1200
     gtatttggac gtggtagact ctggtcctcg tgtatagtat gtcctcgacg ttgtacatct      1260
     tgaaataaag gggatttgat atttcccaaa tatacacgcc attctctgcc tgatgtgcag      1320
     tgatgagttc ccctgtgcgt gaatccatgt cctgcgcaat caatgtgtac gaaaatggag      1380
     cagccgcact gtaaatcaat tcgtcttctt cgtatagctc tcttcttagc agcccgatgt      1440
     tgaactttga tagagggggg agttgaggaa gatgaattgt gcattgtgct ttgtccaact      1500
     acttaatgct gagttttcat ccttgtcgag gaaacattta tagctggccc cctcgcccag      1560
     ggattgcaga gcaccgatgc atgggatacc acctttaatt tgaactggct ttccgtattt      1620
     acagtttgat tgccaatcct tttgggcccc aatcaattct ttccagtgct ttaactttag      1680
     atagtgcggt gcgacatcat caatgacgtt ataatgcaca tcgtttgagt agacctttga      1740
     attgaaatcg aggtgaccac tcaaggaatt atgggaccct aatgcacgtg cccacattgt      1800
     tttgccactt cgagaatcac cctcgattat tatactgata ggtctctccg gccgcgcagc      1860
     ggcatctctc ccgaaatagt catctaccca atcttgcatc tcgacaggca cgttagtgaa      1920
     cgacgagagg ggaaacggag gaacccaagg ttctggagcc tttgcgaaaa tacgctctaa      1980
     atttgaccta atgttatgat gttgaagcac gaaatctttg ggttgttcct cccttaatat      2040
     attgagtgct tccatgacag atcctgcgtt gagaaccttg gcgtacgtgt cgttggcaga      2100
     ttgctgacct cctctagctg atctgccatc gatctggaaa actccatgat caacgaagtc      2160
     tccgtctttt tccacgtatg atttgacatc tgatgagctc ttagctccct gtatgtttgg      2220
     atggaaatgt gctgacctac ttggggagac gaggtcgaag aacttgttat ttttgcagtt      2280
     gtattttcct tcgaactgga tgagcacgtg gagatgaggt tgcccatctt cgtgtagttc      2340
     tctcgagaca cgaatgatta atttattagt tggtgtgttt agggctaata tttgggaaag      2400
     tgcttcttct ttggaaagag aacagtgtgg atatgtcaga aaataatttt tggaatttac      2460
     tcggaaatgt ttaggcggtg gcatatttgt aataatagtt gggcaccgat tggggactct      2520
     ctaaacttgc tctagcaatt ggggactggg gtcctatata tactagaacc ctctatagaa      2580
     ctttcaatct cgtttacaca cgtggcggcc atccgatata atatt                      2625
//