ID AY083350; SV 1; linear; genomic DNA; STD; VRL; 2630 BP. XX AC AY083350; XX DT 02-APR-2003 (Rel. 75, Created) DT 29-NOV-2005 (Rel. 85, Last updated, Version 6) XX DE Cotton leaf crumple virus - [AZ] coat protein AV1, AC3, AC2, and DE replication associated protein AC1 genes, complete cds. XX KW . XX OS Cotton leaf crumple virus - [AZ] OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2630 RX PUBMED; 18943795. RA Idris A.M., Brown J.K.; RT "Cotton leaf crumple virus Is a Distinct Western Hemisphere Begomovirus RT Species with Complex Evolutionary Relationships Indicative of Recombination RT and Reassortment"; RL Phytopathology 94(10):1068-1074(2004). XX RN [2] RP 1-2630 RX DOI; 10.1603/0013-8746(2005)098[0827:GDOWBT]2.0.CO;2. RX AGRICOLA; IND43764757. RA Brown J.K., Idris A.M.; RT "Genetic differentiation of whitefly Bemisia tabaci mitochondrial RT cytochrome oxidase I, and phylogeographic concordance with the coat protein RT of the plant virus genus Begomovirus"; RL Ann. Entomol. Soc. Am. 98(6):827-837(2005). XX RN [3] RP 1-2630 RA Idris A.M., Brown J.K.; RT "Molecular characterization of cotton leaf crumple geminivirus"; RL Unpublished. XX RN [4] RP 1-2630 RA Idris A.M., Brown J.K.; RT ; RL Submitted (11-MAR-2002) to the INSDC. RL Plant Sciences, University of Arizona, Tucson, AZ 85721, USA XX DR MD5; d178067dec6b8e2624df50ca25008cf1. XX FH Key Location/Qualifiers FH FT source 1..2630 FT /organism="Cotton leaf crumple virus - [AZ]" FT /segment="A" FT /host="cotton" FT /mol_type="genomic DNA" FT /country="USA:Arizona, Casa Grande" FT /db_xref="taxon:335397" FT CDS 195..950 FT /codon_start=1 FT /product="coat protein AV1" FT /db_xref="GOA:Q80MS4" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:Q80MS4" FT /protein_id="AAL96821.1" FT /translation="MPKRDAPWRLLAGTSKVSRNANYSPLRVLGPKVNKASEWVNRPMY FT RKPRIYRTLRTHDIPRGCEGPCKVQSYEQRHDVSHVGKVMCISDVTRGNGITHRVGKRF FT CVKSVYILGKIWMDENIKLKNHTNSVIFWLVRDRRPYGTPMDFGQVFNMFDNEPSTATV FT KNDLRDRLQVMHKFYAKVTGGQYASNEQALVKRFWKVNNHVVYNHQEAGKYENHTENAL FT LLYMACTHASNPVYATLKIRIYFYDSIMN" FT CDS complement(947..1345) FT /codon_start=1 FT /product="AC3" FT /db_xref="GOA:Q80MS1" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:Q80MS1" FT /protein_id="AAL96824.1" FT /translation="MDSRTGELITAHQAENGVYIWEIINPLYFKIYGVEDLLYTRTRIY FT HVQIRFNHNLRKALLLHKAYLNFQVWTTSLTASGSTYLIRFKQLVMLYLDELGVISLNN FT VIRAVRFATDKSYVSYVLENHSIKFKFY" FT CDS complement(1092..1481) FT /codon_start=1 FT /product="AC2" FT /db_xref="GOA:Q80MS2" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:Q80MS2" FT /protein_id="AAL96823.1" FT /translation="MLSSSLSTPPSIKKAHRQAKRRAIRRRRIDLNCGCTIYFHIGCTG FT HGFTHRGTHHCTSGREWRVYLGDNKSPLFQDIRSRGSAIHQDAYIPRPDPIQPQLTESV FT ASPQSLPELPSLDDISDSFWVDLFN" FT CDS complement(1408..2472) FT /codon_start=1 FT /product="replication associated protein AC1" FT /db_xref="GOA:Q80MS3" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:Q80MS3" FT /protein_id="AAL96822.1" FT /translation="MPRNPDSFRLQARHIFLTYPKCDIPKNEALQMLQTLSWSVVKPTY FT IRVAREEHSDGFPHLHCLIQLSGKSNIKNERFFDLTHPRRSTNFHPNIQAAKDANAVKN FT YITKDGDCCESGQFTVPGGTKNNKDDVYYNAINAPSLAEALAIIRAGDPRAFIVSYHNI FT KANLERLFKKAPEQWVPPFPLSSFTNVPEQMQEWADDYFGMGPAARPVRPVSLIVEGDS FT RTGKTMWARALGPHNYLSGHLDFNNRVYSNNVAYNVIDDVAPQYLKLKHWKELLGAQQD FT WQSNCKYGKPVQIKGGIPSIVLCNPGEGSSYKDFLDKAENASLKHWTLKNVIFITLDAP FT LYQEGTQASQEEGD" XX SQ Sequence 2630 BP; 693 A; 540 C; 629 G; 768 T; 0 other; actgatggcc gcgcggattt tggagccccc ttttgtcgtt agcgcgagct ttaatttgaa 60 ttaaaggttg cttttttctg tcgtccaatc attttgcgcc tgactagcct agatattagc 120 aacaacttcg cgactaagtt gttgaccgtc aagtataaat aaatgggctt atggcccaat 180 gggtatagag caaaatgccc aagcgtgatg ccccgtggcg cttattagcg ggtacgtcaa 240 aggtaagtcg aaatgccaac tactctccct tgagagtatt gggccctaaa gttaataagg 300 cctctgaatg ggttaacagg cctatgtata ggaagcccag aatctaccgc acgttaagga 360 cgcatgacat tccgagaggc tgtgaagggc catgtaaagt ccagtcatat gaacagcgcc 420 acgatgtctc acacgtgggt aaggtaatgt gtatatctga tgtcacacgt ggtaatggta 480 tcacccaccg tgttggtaag cgtttctgtg ttaagtctgt atatatttta gggaaaatat 540 ggatggatga gaatattaag ctgaagaacc acacgaacag cgtcattttt tggctggtta 600 gagatcgtag accatatggc acgcctatgg actttggtca agtgtttaat atgtttgaca 660 acgagccaag tactgccact gtcaagaacg atctcagaga taggttgcag gtcatgcaca 720 agttttatgc taaggtaact ggaggacaat acgcgagcaa cgagcaagcc ttggtcaaga 780 gattctggaa ggtcaacaat catgtggtgt acaaccacca agaagcaggg aaatatgaga 840 atcacacgga gaatgcgtta ttattgtaca tggcatgtac tcatgcctct aatcctgtgt 900 atgcaacgtt gaaaattcgg atctattttt acgattcgat catgaattaa taaaatttaa 960 attttattga atgattttct agtacataac tgacatacga cttatcagtt gcgaaacgaa 1020 cagctctaat tacattgtta agtgaaatta cgcctaattc gtctaagtac aacataacca 1080 actgtttaaa cctaattaaa taagtcgacc cagaagctgt cagagatgtc gtccagactt 1140 ggaagttcag gtaagctttg tggagaagca acgctttccg taagttgtgg ttgaatcgga 1200 tctggacgtg gtatatacgc gtcctggtgt atagcagatc ctctactccg tatatcttga 1260 aatagagggg atttattatc tcccagatat acacgccatt ctctgcctga tgtgcagtga 1320 tgagttcccc tgtgcgtgaa tccatgaccg gtgcagccta tgtggaagta tatggtgcat 1380 ccacagttta gatcaatgcg tcgtcgtcta atcgccctcc tcttggcttg cctgtgtgcc 1440 ttcttgatag aggggggcgt cgagagtgat gaagataaca ttcttgagtg tccaatgttt 1500 gagcgacgca ttttccgcct tatccaggaa atctttatag ctggatccct cgcctggatt 1560 gcaaagcacg attgaaggga tccctccttt aatttgaaca ggtttcccgt atttgcaatt 1620 tgactgccaa tcttgttggg ccccaagaag ctctttccaa tgctttagct ttaggtattg 1680 cggtgctacg tcatcaatga cgttataggc aacattattc gagtacactc gattattgaa 1740 gtctaggtgt ccactgaggt aattatgtgg gcctaaagca cgagcccaca tcgtcttgcc 1800 cgttctagaa tcaccttcca ctatgagact aactggtctt acaggccgcg cagcgggacc 1860 cattccaaaa taatcatccg cccattcttg catctgttca ggaacgttag tgaaagagga 1920 aagtggaaat ggagggaccc attgttcagg cgcctttttg aaaaggcgtt ccaagtttgc 1980 tttgatgtta tggtagctca cgatgaacgc tcttggatct ccggcccgga taattgcaag 2040 agcttccgcc agactaggtg cattgatggc gttataatag acgtcgtctt tattattctt 2100 tgtaccccca ggcactgtga actgtccgga ttcacaacaa tcgccgtctt tggtgatgta 2160 attcttgacg gcgttggcgt ctttggctgc ttgtatgttt gggtgaaaat tggtcgacct 2220 tctggggtga gtaaggtcga aaaatctctc attcttgatg ttggactttc cagagagttg 2280 gatgagacag tgaagatgtg ggaatccgtc tgagtgctcc tctctggcaa ctcgaatata 2340 tgttggtttg acgactgacc atgataaggt ttgaagcatt tgaagagctt catttttagg 2400 gatatcgcac ttgggatagg ttaagaaaat atgtctggct tgtaaacgaa aagaatcggg 2460 gtttctaggc attttttaaa tagtgaccca ggactcaaaa actagctctc aacttctctc 2520 atatgttgtg gagtctggag tcctttatat atgtttacgc tatagaaggc atttggggac 2580 tctcccgggc ccaccatagg actccatacc gcggccatct atataatatt 2630 //